Wall clock time and date at job start Tue Mar 31 2020 17:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.91694 * 2 1 4 4 C 1.54910 * 111.00416 * 236.09276 * 2 1 3 5 5 N 1.47420 * 104.83035 * 204.91869 * 4 2 1 6 6 C 1.36943 * 125.64281 * 204.16534 * 5 4 2 7 7 H 1.08008 * 119.99833 * 179.97438 * 6 5 4 8 8 C 1.38808 * 120.00477 * 359.95630 * 6 5 4 9 9 N 1.31624 * 119.99592 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00136 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47276 * 60.00490 * 10 8 6 12 12 H 1.48501 * 109.46866 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47032 * 299.99833 * 10 8 6 14 14 C 1.47022 * 108.70821 * 24.12937 * 5 4 2 15 15 C 1.54322 * 107.26619 * 358.94281 * 14 5 4 16 16 H 1.08997 * 110.72528 * 96.34774 * 15 14 5 17 17 N 1.46512 * 110.71695 * 219.44451 * 15 14 5 18 18 C 1.34770 * 119.99646 * 273.54465 * 17 15 14 19 19 O 1.21281 * 120.00244 * 0.02562 * 18 17 15 20 20 C 1.50698 * 120.00019 * 179.97438 * 18 17 15 21 21 C 1.53006 * 109.47184 * 300.00531 * 20 18 17 22 22 C 1.52999 * 109.47150 * 59.99974 * 20 18 17 23 23 C 1.52997 * 109.47317 * 180.02562 * 22 20 18 24 24 C 1.52995 * 109.47310 * 299.99815 * 23 22 20 25 25 F 1.39895 * 109.47470 * 300.00377 * 24 23 22 26 26 F 1.39898 * 109.47140 * 179.97438 * 24 23 22 27 27 C 1.53002 * 109.46602 * 60.00177 * 24 23 22 28 28 C 1.52997 * 109.47342 * 180.02562 * 20 18 17 29 29 H 1.09004 * 109.46768 * 296.10279 * 1 2 3 30 30 H 1.09000 * 109.47126 * 56.09935 * 1 2 3 31 31 H 1.08996 * 109.47134 * 176.10289 * 1 2 3 32 32 H 1.08999 * 110.36706 * 86.07854 * 4 2 1 33 33 H 1.08998 * 110.36540 * 323.75624 * 4 2 1 34 34 H 0.96998 * 119.99694 * 179.97438 * 9 8 6 35 35 H 1.08993 * 109.88028 * 239.52397 * 14 5 4 36 36 H 1.09003 * 109.88012 * 118.35741 * 14 5 4 37 37 H 0.96992 * 119.99836 * 93.54577 * 17 15 14 38 38 H 1.09001 * 109.47002 * 299.99404 * 21 20 18 39 39 H 1.08993 * 109.46955 * 59.99842 * 21 20 18 40 40 H 1.09000 * 109.47050 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.47362 * 300.00765 * 22 20 18 42 42 H 1.09002 * 109.46716 * 60.00124 * 22 20 18 43 43 H 1.09001 * 109.46832 * 180.02562 * 23 22 20 44 44 H 1.09002 * 109.47153 * 60.00359 * 23 22 20 45 45 H 1.09004 * 109.46930 * 179.97438 * 27 24 23 46 46 H 1.09002 * 109.47067 * 59.99942 * 27 24 23 47 47 H 1.09001 * 109.47230 * 299.99432 * 28 20 18 48 48 H 1.09001 * 109.47375 * 60.00270 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4271 -1.2432 -0.7732 6 6 4.4644 -1.5655 -1.6071 7 1 5.4132 -1.8751 -1.1940 8 6 4.2965 -1.4948 -2.9831 9 7 3.1404 -1.1174 -3.4865 10 14 5.7113 -1.9353 -4.1205 11 1 6.1194 -3.3428 -3.8809 12 1 5.2786 -1.7784 -5.5324 13 1 6.8608 -1.0340 -3.8526 14 6 3.4675 -1.2742 0.6962 15 6 2.0862 -0.8079 1.2023 16 1 1.4478 -1.6631 1.4240 17 7 2.2287 0.0497 2.3815 18 6 2.3021 -0.5003 3.6097 19 8 2.2508 -1.7051 3.7387 20 6 2.4493 0.3818 4.8227 21 6 3.7376 1.1989 4.7059 22 6 1.2511 1.3289 4.9130 23 6 1.4008 2.2249 6.1441 24 6 1.4604 1.3567 7.4025 25 9 0.2826 0.6096 7.5099 26 9 1.5979 2.1760 8.5281 27 6 2.6587 0.4096 7.3122 28 6 2.5092 -0.4869 6.0808 29 1 -0.3633 0.4522 0.9229 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3633 -1.0252 -0.0698 32 1 2.1560 -0.1722 -2.0836 33 1 1.4519 -1.6705 -1.4023 34 1 3.0232 -1.0677 -4.4481 35 1 4.2426 -0.5998 1.0600 36 1 3.6650 -2.2894 1.0402 37 1 2.2701 1.0132 2.2783 38 1 4.5913 0.5242 4.6416 39 1 3.6952 1.8177 3.8096 40 1 3.8438 1.8372 5.5830 41 1 1.2088 1.9477 4.0166 42 1 0.3334 0.7468 4.9962 43 1 0.5470 2.8993 6.2086 44 1 2.3186 2.8070 6.0604 45 1 2.7015 -0.2086 8.2090 46 1 3.5764 0.9917 7.2285 47 1 1.5916 -1.0692 6.1643 48 1 3.3631 -1.1613 6.0163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079981904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:08 Heat of formation + Delta-G solvation = -151.244179 kcal Electronic energy + Delta-G solvation = -30005.710472 eV Core-core repulsion = 25730.183825 eV Total energy + Delta-G solvation = -4275.526647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.93783 -47.93693 -41.63703 -39.65629 -38.26147 -35.72885 -34.13349 -32.59909 -32.26136 -32.14972 -29.09526 -27.78915 -27.53990 -25.64555 -24.23712 -24.08823 -22.33593 -21.49666 -21.24539 -19.79461 -18.98669 -18.43346 -18.04035 -17.65234 -17.32525 -17.19510 -16.68547 -16.15320 -15.84029 -15.69705 -15.26993 -14.92999 -14.72263 -14.64248 -14.60313 -14.22528 -14.14973 -14.02849 -13.77747 -13.52244 -13.43513 -13.39653 -13.13505 -12.96686 -12.81904 -12.73196 -12.70710 -12.55993 -12.48979 -12.12106 -12.07498 -12.00765 -11.89953 -11.67623 -11.59390 -11.30658 -11.07524 -10.76837 -10.64470 -10.07145 -8.92364 -7.79159 -5.24638 1.46194 1.49359 1.55766 1.63437 2.11290 2.49376 2.82618 3.11704 3.27003 3.30790 3.42509 3.63269 3.66799 3.70685 3.80491 3.93366 4.01287 4.05572 4.11892 4.14437 4.29702 4.41899 4.49441 4.63383 4.66190 4.69401 4.74770 4.77436 4.88523 4.90911 4.91582 4.95240 4.96358 5.01252 5.05536 5.08719 5.16342 5.23136 5.31870 5.41801 5.44611 5.56479 5.66875 5.78544 6.28848 6.59847 7.08942 7.28323 7.74504 8.37760 9.21914 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.026268 B = 0.002647 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.668939 B =10575.204157 C =11021.195855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 H 0.091 0.909 4 C 0.162 3.838 5 N -0.624 5.624 6 C -0.245 4.245 7 H 0.075 0.925 8 C -0.061 4.061 9 N -0.945 5.945 10 Si 0.981 3.019 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.274 1.274 14 C 0.129 3.871 15 C 0.155 3.845 16 H 0.073 0.927 17 N -0.698 5.698 18 C 0.520 3.480 19 O -0.584 6.584 20 C -0.072 4.072 21 C -0.148 4.148 22 C -0.105 4.105 23 C -0.151 4.151 24 C 0.278 3.722 25 F -0.216 7.216 26 F -0.210 7.210 27 C -0.153 4.153 28 C -0.093 4.093 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.081 0.919 33 H -0.015 1.015 34 H 0.249 0.751 35 H 0.031 0.969 36 H 0.001 0.999 37 H 0.415 0.585 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.125 0.875 45 H 0.091 0.909 46 H 0.122 0.878 47 H 0.057 0.943 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 12.202 21.079 24.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.124 4.124 3 H 0.109 0.891 4 C 0.037 3.963 5 N -0.350 5.350 6 C -0.374 4.374 7 H 0.093 0.907 8 C -0.254 4.254 9 N -0.594 5.594 10 Si 0.809 3.191 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.200 1.200 14 C 0.002 3.998 15 C 0.049 3.951 16 H 0.091 0.909 17 N -0.350 5.350 18 C 0.307 3.693 19 O -0.464 6.464 20 C -0.075 4.075 21 C -0.205 4.205 22 C -0.142 4.142 23 C -0.188 4.188 24 C 0.242 3.758 25 F -0.197 7.197 26 F -0.191 7.191 27 C -0.191 4.191 28 C -0.131 4.131 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.003 0.997 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.019 0.981 37 H 0.253 0.747 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.083 0.917 43 H 0.120 0.880 44 H 0.144 0.856 45 H 0.110 0.890 46 H 0.140 0.860 47 H 0.076 0.924 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.851 11.338 20.987 24.162 hybrid contribution 0.533 -0.714 -0.794 1.193 sum -3.318 10.624 20.193 23.057 Atomic orbital electron populations 1.21605 0.92558 1.01650 1.02696 1.22718 0.96982 0.99174 0.93511 0.89095 1.21817 0.83359 0.95040 0.96126 1.44717 1.10706 1.79167 1.00402 1.19375 0.91759 1.38185 0.88108 0.90702 1.25603 0.99829 1.02108 0.97857 1.70004 1.23978 1.54416 1.11029 0.85124 0.78465 0.78005 0.77540 1.20928 1.21560 1.20008 1.21687 0.96625 0.96893 0.84575 1.21666 0.94933 0.93682 0.84855 0.90876 1.45827 1.73633 1.10781 1.04743 1.21120 0.74434 0.88602 0.85109 1.90699 1.51392 1.17391 1.86891 1.20835 0.99511 0.95608 0.91533 1.22065 0.93758 0.99863 1.04798 1.21569 0.96221 0.97018 0.99440 1.22575 1.07636 0.98067 0.90541 1.21503 0.83301 0.86271 0.84757 1.92975 1.51728 1.78309 1.96680 1.92992 1.96039 1.74225 1.55883 1.22597 0.97734 0.98621 1.00110 1.21284 1.03367 0.97007 0.91448 0.90502 0.91611 0.93880 0.90088 0.99665 0.94090 0.95071 0.98082 0.74738 0.92601 0.90315 0.88336 0.87491 0.91724 0.88007 0.85635 0.89037 0.85971 0.92376 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.31 71.98 0.67 -2.84 16 2 C -0.10 -3.54 3.25 -9.40 -0.03 -3.57 16 3 H 0.09 2.80 8.00 -2.39 -0.02 2.78 16 4 C 0.16 7.80 5.36 86.86 0.47 8.27 16 5 N -0.62 -32.69 3.39 -692.00 -2.35 -35.04 16 6 C -0.25 -14.00 10.27 84.03 0.86 -13.14 16 7 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 8 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 9 N -0.95 -55.49 10.09 21.65 0.22 -55.27 16 10 Si 0.98 45.55 29.55 68.60 2.03 47.57 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 C 0.13 5.67 6.99 86.73 0.61 6.27 16 15 C 0.15 5.39 2.70 46.18 0.12 5.51 16 16 H 0.07 2.85 7.60 -2.39 -0.02 2.83 16 17 N -0.70 -17.61 4.92 -436.91 -2.15 -19.75 16 18 C 0.52 13.78 6.48 87.66 0.57 14.35 16 19 O -0.58 -21.47 15.71 -3.03 -0.05 -21.52 16 20 C -0.07 -1.20 0.61 -52.93 -0.03 -1.23 16 21 C -0.15 -1.74 7.67 71.98 0.55 -1.18 16 22 C -0.10 -1.30 4.51 30.59 0.14 -1.17 16 23 C -0.15 -1.45 5.18 30.59 0.16 -1.29 16 24 C 0.28 4.13 2.10 30.59 0.06 4.19 16 25 F -0.22 -4.46 16.03 44.97 0.72 -3.74 16 26 F -0.21 -3.58 17.06 44.97 0.77 -2.82 16 27 C -0.15 -1.99 5.18 30.61 0.16 -1.83 16 28 C -0.09 -1.71 3.90 30.61 0.12 -1.59 16 29 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.29 8.07 -2.39 -0.02 1.27 16 32 H 0.08 4.39 5.87 -2.39 -0.01 4.38 16 33 H -0.01 -0.78 7.98 -2.39 -0.02 -0.80 16 34 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 35 H 0.03 1.32 8.03 -2.39 -0.02 1.30 16 36 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.41 7.50 7.35 -92.71 -0.68 6.82 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 0.77 7.56 -2.39 -0.02 0.75 16 40 H 0.10 0.62 4.80 -2.39 -0.01 0.60 16 41 H 0.11 0.88 7.56 -2.39 -0.02 0.86 16 42 H 0.06 1.05 7.80 -2.39 -0.02 1.03 16 43 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.13 0.60 6.43 -2.39 -0.02 0.59 16 45 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.12 0.99 6.43 -2.39 -0.02 0.98 16 47 H 0.06 1.34 7.76 -2.39 -0.02 1.32 16 48 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 Total: -1.00 -73.57 371.42 4.37 -69.21 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.29 Total: 13.60 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 4.89 Total: 7.75 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -4.28 Total: -110.06 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 9 Polarization: -8.05 SS G_CDS: 1.49 Total: -6.56 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -73.57 4.37 -69.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079981904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.039 kcal (2) G-P(sol) polarization free energy of solvation -73.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds