Wall clock time and date at job start Tue Mar 31 2020 16:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.99250 * 2 1 4 4 C 1.54457 * 109.87687 * 121.08719 * 2 1 3 5 5 C 1.54395 * 103.03428 * 141.01587 * 4 2 1 6 6 C 1.54116 * 102.47160 * 325.26472 * 5 4 2 7 7 N 1.47555 * 110.02956 * 238.71641 * 2 1 3 8 8 C 1.34779 * 125.56944 * 61.62115 * 7 2 1 9 9 O 1.21520 * 119.99763 * 359.93724 * 8 7 2 10 10 C 1.48150 * 119.99726 * 179.97438 * 8 7 2 11 11 C 1.39449 * 120.09320 * 179.72349 * 10 8 7 12 12 N 1.32080 * 119.87032 * 179.75569 * 11 10 8 13 13 C 1.32138 * 120.07111 * 0.52252 * 12 11 10 14 14 C 1.38731 * 120.19423 * 359.73024 * 13 12 11 15 15 N 1.31794 * 120.13045 * 0.02562 * 14 13 12 16 16 C 1.52108 * 110.50751 * 207.26918 * 5 4 2 17 17 C 1.53343 * 109.44335 * 295.91313 * 16 5 4 18 18 N 1.46931 * 108.68502 * 306.70445 * 17 16 5 19 19 C 1.36943 * 120.54799 * 234.36555 * 18 17 16 20 20 H 1.08000 * 119.99749 * 27.95792 * 19 18 17 21 21 C 1.38814 * 119.99956 * 207.95485 * 19 18 17 22 22 N 1.31621 * 119.99790 * 17.47329 * 21 19 18 23 23 Si 1.86790 * 120.00002 * 197.46669 * 21 19 18 24 24 H 1.48503 * 109.47197 * 90.00202 * 23 21 19 25 25 H 1.48502 * 109.47395 * 210.00212 * 23 21 19 26 26 H 1.48496 * 109.47526 * 330.00359 * 23 21 19 27 27 C 1.46928 * 118.90215 * 54.34502 * 18 17 16 28 28 C 1.52100 * 110.50762 * 83.24509 * 5 4 2 29 29 H 1.09000 * 109.47009 * 298.91550 * 1 2 3 30 30 H 1.08999 * 109.47031 * 58.91719 * 1 2 3 31 31 H 1.08997 * 109.47165 * 178.91374 * 1 2 3 32 32 H 1.09003 * 110.73867 * 22.57790 * 4 2 1 33 33 H 1.09002 * 110.73173 * 259.44509 * 4 2 1 34 34 H 1.09002 * 110.37085 * 154.90652 * 6 5 4 35 35 H 1.08999 * 110.37922 * 277.13693 * 6 5 4 36 36 H 1.08005 * 120.06395 * 0.02927 * 11 10 8 37 37 H 1.07999 * 119.90372 * 179.71067 * 13 12 11 38 38 H 1.08005 * 119.93473 * 180.02562 * 14 13 12 39 39 H 1.09000 * 109.47524 * 55.90347 * 16 5 4 40 40 H 1.08997 * 109.47260 * 175.91773 * 16 5 4 41 41 H 1.08994 * 109.60342 * 186.94426 * 17 16 5 42 42 H 1.08994 * 109.60224 * 66.46183 * 17 16 5 43 43 H 0.96998 * 120.00101 * 179.97438 * 22 21 19 44 44 H 1.08995 * 109.60933 * 185.89125 * 27 18 17 45 45 H 1.08999 * 109.60345 * 65.40953 * 27 18 17 46 46 H 1.08999 * 109.47856 * 184.07305 * 28 5 4 47 47 H 1.09002 * 109.47671 * 304.09003 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0552 -0.7500 1.2439 5 6 3.2732 -1.5242 0.6953 6 6 2.8227 -1.8838 -0.7340 7 7 2.0354 -0.7199 -1.1847 8 6 1.8144 -0.3707 -2.4676 9 8 1.1472 0.6122 -2.7234 10 6 2.3841 -1.1858 -3.5658 11 6 2.1519 -0.8296 -4.8939 12 7 2.6660 -1.5566 -5.8694 13 6 3.3903 -2.6253 -5.5877 14 6 3.6188 -2.9852 -4.2675 15 7 3.1136 -2.2626 -3.2879 16 6 3.5180 -2.7822 1.5146 17 6 3.8891 -2.3921 2.9504 18 7 5.0106 -1.4439 2.9056 19 6 6.1593 -1.6908 3.6091 20 1 6.4550 -2.7078 3.8205 21 6 6.9436 -0.6339 4.0504 22 7 6.4398 0.5807 4.1069 23 14 8.7140 -0.9356 4.5642 24 1 9.6047 -0.7796 3.3863 25 1 9.1000 0.0455 5.6100 26 1 8.8448 -2.3124 5.1048 27 6 4.8794 -0.2267 2.0932 28 6 4.5026 -0.6293 0.6624 29 1 -0.3633 0.4969 0.8996 30 1 -0.3633 0.5306 -0.8801 31 1 -0.3633 -1.0274 -0.0195 32 1 1.3012 -1.4379 1.6268 33 1 2.3620 -0.0463 2.0178 34 1 3.6889 -2.0290 -1.3796 35 1 2.2042 -2.7812 -0.7226 36 1 1.5565 0.0415 -5.1243 37 1 3.8055 -3.2204 -6.3876 38 1 4.2118 -3.8592 -4.0421 39 1 2.6136 -3.3905 1.5255 40 1 4.3340 -3.3521 1.0703 41 1 4.1845 -3.2819 3.5063 42 1 3.0328 -1.9230 3.4348 43 1 6.9877 1.3192 4.4156 44 1 5.8275 0.3110 2.0842 45 1 4.0995 0.4097 2.5114 46 1 5.3327 -1.1688 0.2062 47 1 4.2856 0.2650 0.0783 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086900266.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:19 Heat of formation + Delta-G solvation = 28.382831 kcal Electronic energy + Delta-G solvation = -29391.122943 eV Core-core repulsion = 25574.074695 eV Total energy + Delta-G solvation = -3817.048249 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.42112 -41.39344 -39.68749 -37.53725 -35.59292 -34.77660 -33.22678 -32.56939 -32.14170 -31.60453 -28.73120 -27.21275 -26.61196 -25.63383 -25.58562 -23.98393 -23.09414 -22.53751 -20.72885 -19.68919 -18.91715 -18.38822 -18.07297 -17.76909 -17.35682 -16.88717 -16.56301 -16.04446 -15.73722 -15.54381 -15.33637 -15.13684 -14.98017 -14.63132 -14.48283 -14.23375 -14.05115 -13.80184 -13.55172 -13.27594 -13.16536 -12.97754 -12.86547 -12.69483 -12.56794 -12.41658 -12.25011 -12.16408 -11.97502 -11.78209 -11.73098 -11.40700 -11.29298 -11.08193 -10.99660 -10.53895 -10.48174 -10.09268 -9.68002 -8.61670 -7.84043 -5.28288 -0.68157 -0.01732 1.47323 1.48999 1.57272 1.60116 1.75551 2.53411 2.70551 2.83940 3.16962 3.29110 3.37849 3.49386 3.57018 3.72595 3.80330 3.88771 4.10463 4.15704 4.23510 4.28420 4.30785 4.48674 4.51700 4.57036 4.61246 4.75587 4.81873 4.83159 4.88202 4.95334 5.00488 5.04714 5.11566 5.21656 5.26492 5.31113 5.31869 5.41061 5.45354 5.46478 5.58284 5.69173 5.82326 6.05285 6.37407 6.42878 6.59038 6.93137 7.18876 7.92114 8.42650 9.21589 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.003409 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.573485 B = 8212.035780 C = 9077.909766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.134 3.866 3 H 0.058 0.942 4 C -0.111 4.111 5 C -0.058 4.058 6 C 0.125 3.875 7 N -0.589 5.589 8 C 0.579 3.421 9 O -0.565 6.565 10 C 0.013 3.987 11 C 0.101 3.899 12 N -0.459 5.459 13 C 0.085 3.915 14 C 0.055 3.945 15 N -0.421 5.421 16 C -0.102 4.102 17 C 0.142 3.858 18 N -0.608 5.608 19 C -0.258 4.258 20 H 0.068 0.932 21 C -0.052 4.052 22 N -0.935 5.935 23 Si 0.962 3.038 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.266 1.266 27 C 0.183 3.817 28 C -0.107 4.107 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.178 0.822 37 H 0.219 0.781 38 H 0.217 0.783 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.247 0.753 44 H 0.045 0.955 45 H 0.001 0.999 46 H 0.049 0.951 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 -10.010 -17.143 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.031 3.969 3 H 0.076 0.924 4 C -0.149 4.149 5 C -0.059 4.059 6 C 0.003 3.997 7 N -0.319 5.319 8 C 0.367 3.633 9 O -0.445 6.445 10 C -0.126 4.126 11 C -0.057 4.057 12 N -0.173 5.173 13 C -0.077 4.077 14 C -0.108 4.108 15 N -0.139 5.139 16 C -0.141 4.141 17 C 0.017 3.983 18 N -0.332 5.332 19 C -0.388 4.388 20 H 0.086 0.914 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.791 3.209 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.191 1.191 27 C 0.057 3.943 28 C -0.146 4.146 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.195 0.805 37 H 0.235 0.765 38 H 0.233 0.767 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.019 0.981 46 H 0.068 0.932 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.678 -9.287 -17.236 21.841 hybrid contribution 1.136 0.676 0.646 1.471 sum -8.542 -8.611 -16.591 20.552 Atomic orbital electron populations 1.22025 0.93339 1.02664 1.02731 1.21780 0.95311 0.95604 0.84199 0.92386 1.22719 0.97263 0.99466 0.95469 1.20977 0.94136 0.96150 0.94592 1.22640 0.96058 0.87103 0.93909 1.48652 1.50342 1.28721 1.04228 1.17642 0.80297 0.83778 0.81622 1.90751 1.41873 1.28315 1.83560 1.21870 1.00257 0.96020 0.94447 1.23765 0.95283 0.98784 0.87867 1.68694 1.07769 1.05711 1.35150 1.24877 0.91563 0.92278 0.98936 1.24694 0.96940 0.99854 0.89336 1.68631 1.04936 1.03158 1.37169 1.21677 1.01711 0.95316 0.95438 1.21087 0.89394 0.92567 0.95252 1.44290 1.13708 1.22457 1.52708 1.19543 0.99265 0.92172 1.27840 0.91442 1.25741 1.02813 0.96037 1.00093 1.70186 1.35930 1.00312 1.51734 0.85340 0.80973 0.77494 0.77115 1.21525 1.22505 1.19104 1.20535 0.98200 0.87814 0.87720 1.21729 0.96838 0.98143 0.97896 0.90141 0.92974 0.91607 0.88710 0.91321 0.88221 0.89865 0.80471 0.76478 0.76656 0.89319 0.92013 0.92805 0.96337 0.94363 0.93641 0.98144 0.93232 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.10 71.98 0.66 -2.96 16 2 C 0.13 3.74 3.11 45.29 0.14 3.88 16 3 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.11 -3.13 4.43 31.56 0.14 -2.99 16 5 C -0.06 -1.70 0.55 -51.92 -0.03 -1.73 16 6 C 0.12 3.14 4.83 86.55 0.42 3.56 16 7 N -0.59 -16.44 3.07 -790.75 -2.43 -18.87 16 8 C 0.58 17.05 7.64 86.88 0.66 17.71 16 9 O -0.57 -19.26 15.41 -3.78 -0.06 -19.32 16 10 C 0.01 0.31 6.72 41.89 0.28 0.59 16 11 C 0.10 2.22 10.77 84.95 0.92 3.14 16 12 N -0.46 -8.53 10.49 -194.11 -2.04 -10.56 16 13 C 0.09 0.97 11.23 84.76 0.95 1.92 16 14 C 0.06 0.67 11.22 84.82 0.95 1.63 16 15 N -0.42 -8.58 6.80 -184.32 -1.25 -9.83 16 16 C -0.10 -2.96 4.84 30.41 0.15 -2.81 16 17 C 0.14 5.41 6.24 86.41 0.54 5.95 16 18 N -0.61 -29.40 2.98 -698.50 -2.08 -31.48 16 19 C -0.26 -13.89 9.57 84.03 0.80 -13.08 16 20 H 0.07 3.53 7.89 -2.91 -0.02 3.50 16 21 C -0.05 -2.86 4.90 84.86 0.42 -2.45 16 22 N -0.94 -55.37 11.20 21.65 0.24 -55.13 16 23 Si 0.96 44.67 29.59 68.60 2.03 46.70 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 C 0.18 8.68 5.02 86.41 0.43 9.11 16 28 C -0.11 -3.98 4.85 30.41 0.15 -3.84 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.42 6.92 -2.39 -0.02 1.40 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 2.27 7.68 -2.39 -0.02 2.25 16 33 H 0.07 2.29 6.17 -2.39 -0.01 2.28 16 34 H 0.10 2.58 5.84 -2.39 -0.01 2.56 16 35 H 0.08 1.83 7.99 -2.39 -0.02 1.81 16 36 H 0.18 3.80 7.65 -2.91 -0.02 3.78 16 37 H 0.22 0.46 8.06 -2.91 -0.02 0.43 16 38 H 0.22 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 42 H 0.02 0.71 7.62 -2.39 -0.02 0.69 16 43 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 44 H 0.05 2.52 6.01 -2.39 -0.01 2.50 16 45 H 0.00 0.03 6.55 -2.39 -0.02 0.01 16 46 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 47 H 0.04 1.64 7.82 -2.39 -0.02 1.63 16 Total: -1.00 -70.90 365.20 2.96 -67.94 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.97 Total: 12.91 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 7.58 Total: 17.64 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -7.56 Total: -125.87 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.06 Total: -19.32 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -70.90 2.96 -67.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086900266.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.323 kcal (2) G-P(sol) polarization free energy of solvation -70.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds