Wall clock time and date at job start Tue Mar 31 2020 16:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.31590 * 2 1 4 4 C 1.55012 * 110.35833 * 237.67885 * 2 1 3 5 5 C 1.54536 * 101.53203 * 204.75536 * 4 2 1 6 6 C 1.53694 * 103.71636 * 34.63691 * 5 4 2 7 7 N 1.47184 * 107.10457 * 338.77853 * 6 5 4 8 8 C 1.34774 * 125.66003 * 178.41675 * 7 6 5 9 9 O 1.21551 * 120.00121 * 174.49992 * 8 7 6 10 10 C 1.47832 * 120.00357 * 354.76675 * 8 7 6 11 11 C 1.39944 * 120.94401 * 187.46058 * 10 8 7 12 12 N 1.32151 * 118.92327 * 179.69872 * 11 10 8 13 13 C 1.31864 * 120.96719 * 0.60957 * 12 11 10 14 14 N 1.31870 * 122.09704 * 359.66084 * 13 12 11 15 15 C 1.32147 * 120.96589 * 0.02562 * 14 13 12 16 16 C 1.52278 * 110.16169 * 276.40954 * 5 4 2 17 17 C 1.53323 * 109.41293 * 297.16381 * 16 5 4 18 18 N 1.46926 * 108.70642 * 306.49378 * 17 16 5 19 19 C 1.36937 * 120.56126 * 234.25674 * 18 17 16 20 20 H 1.07995 * 120.00317 * 35.44037 * 19 18 17 21 21 C 1.38815 * 120.00119 * 215.44837 * 19 18 17 22 22 N 1.31625 * 119.99778 * 355.86233 * 21 19 18 23 23 Si 1.86796 * 120.00363 * 175.85772 * 21 19 18 24 24 H 1.48499 * 109.46877 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46730 * 119.99717 * 23 21 19 26 26 H 1.48501 * 109.47397 * 240.00170 * 23 21 19 27 27 C 1.46934 * 118.87890 * 54.22826 * 18 17 16 28 28 C 1.52266 * 110.16162 * 153.27864 * 5 4 2 29 29 H 1.08994 * 109.47451 * 299.24733 * 1 2 3 30 30 H 1.09000 * 109.46945 * 59.25731 * 1 2 3 31 31 H 1.09001 * 109.46727 * 179.25069 * 1 2 3 32 32 H 1.09000 * 111.01342 * 322.81622 * 4 2 1 33 33 H 1.09001 * 111.01699 * 86.65689 * 4 2 1 34 34 H 1.09000 * 110.01817 * 219.35212 * 6 5 4 35 35 H 1.09000 * 109.80686 * 98.08655 * 6 5 4 36 36 H 1.07998 * 120.53475 * 359.97374 * 11 10 8 37 37 H 1.08006 * 118.95091 * 179.67762 * 13 12 11 38 38 H 1.07997 * 120.53775 * 180.02562 * 15 14 13 39 39 H 1.08992 * 109.48258 * 57.14441 * 16 5 4 40 40 H 1.08995 * 109.47968 * 177.18731 * 16 5 4 41 41 H 1.09001 * 109.59712 * 186.72656 * 17 16 5 42 42 H 1.08997 * 109.72476 * 66.33374 * 17 16 5 43 43 H 0.96996 * 119.99782 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.60465 * 185.99769 * 27 18 17 45 45 H 1.08999 * 109.72661 * 65.60054 * 27 18 17 46 46 H 1.09003 * 109.48474 * 182.80698 * 28 5 4 47 47 H 1.09002 * 109.48412 * 302.82978 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0692 -0.7770 -1.2281 5 6 3.4658 -1.2119 -0.7296 6 6 3.2523 -1.4739 0.7697 7 7 2.0429 -0.7368 1.1700 8 6 1.4981 -0.7314 2.4027 9 8 0.5534 -0.0064 2.6465 10 6 2.0531 -1.6028 3.4601 11 6 1.4122 -1.7302 4.6976 12 7 1.9402 -2.5249 5.6120 13 6 3.0589 -3.1818 5.3758 14 7 3.6981 -3.0864 4.2263 15 6 3.2377 -2.3191 3.2539 16 6 4.4706 -0.0864 -0.9356 17 6 4.6058 0.2081 -2.4342 18 7 4.9202 -1.0449 -3.1342 19 6 6.0181 -1.1312 -3.9481 20 1 6.9227 -0.5995 -3.6928 21 6 5.9682 -1.9021 -5.1014 22 7 4.8948 -2.6146 -5.3708 23 14 7.4243 -1.9282 -6.2712 24 1 8.4986 -1.0491 -5.7438 25 1 7.9367 -3.3168 -6.3927 26 1 6.9954 -1.4401 -7.6065 27 6 4.0370 -2.2039 -2.9457 28 6 3.9057 -2.4828 -1.4438 29 1 -0.3634 0.5021 0.8966 30 1 -0.3633 0.5253 -0.8833 31 1 -0.3633 -1.0276 -0.0134 32 1 1.4452 -1.6434 -1.4473 33 1 2.1496 -0.1256 -2.0984 34 1 4.1109 -1.1147 1.3372 35 1 3.1107 -2.5409 0.9417 36 1 0.4985 -1.1913 4.9004 37 1 3.4644 -3.8184 6.1483 38 1 3.7665 -2.2464 2.3151 39 1 4.1246 0.8088 -0.4191 40 1 5.4391 -0.3860 -0.5353 41 1 5.4086 0.9278 -2.5944 42 1 3.6690 0.6146 -2.8153 43 1 4.8601 -3.1536 -6.1765 44 1 4.4647 -3.0744 -3.4431 45 1 3.0540 -1.9895 -3.3650 46 1 4.8685 -2.8071 -1.0488 47 1 3.1644 -3.2655 -1.2827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086918242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:25 Heat of formation + Delta-G solvation = 60.620331 kcal Electronic energy + Delta-G solvation = -29293.469209 eV Core-core repulsion = 25477.818884 eV Total energy + Delta-G solvation = -3815.650326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.65884 -40.43232 -38.58417 -36.12445 -34.25922 -33.29514 -33.15629 -31.20985 -30.92972 -29.95737 -27.38993 -26.51660 -25.45638 -24.86370 -24.00381 -22.63824 -21.91244 -21.08608 -19.78581 -18.44827 -17.92228 -17.79458 -16.94631 -16.60973 -16.40220 -15.58385 -15.00104 -14.91324 -14.44373 -14.25146 -14.02552 -13.97069 -13.86941 -13.56102 -13.35064 -13.13354 -12.86018 -12.50105 -12.36586 -12.02013 -11.87192 -11.79727 -11.53751 -11.21986 -11.07469 -11.06725 -10.84802 -10.71013 -10.56884 -10.33774 -10.14069 -10.06566 -9.93554 -9.78335 -9.63686 -9.56486 -9.47284 -8.80067 -8.49551 -6.60417 -5.84213 -3.37628 0.12612 0.69298 2.59160 2.69825 3.32501 3.40835 3.41980 3.49615 3.73870 3.80510 4.11486 4.17901 4.42890 4.49699 4.55170 4.79842 4.89638 5.00598 5.06555 5.23887 5.26785 5.35103 5.38431 5.40624 5.54065 5.57082 5.67270 5.77371 5.90288 5.93972 6.00772 6.05828 6.13972 6.21682 6.28222 6.39731 6.46087 6.50931 6.55432 6.57758 6.66996 6.77762 6.90672 7.31426 7.36920 7.64312 7.73576 7.75920 7.90055 8.47880 9.19537 9.78111 10.36970 11.21242 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019370 B = 0.003097 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.179680 B = 9037.810423 C = 9937.187688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 H 0.079 0.921 4 C -0.118 4.118 5 C -0.055 4.055 6 C 0.088 3.912 7 N -0.602 5.602 8 C 0.583 3.417 9 O -0.533 6.533 10 C -0.238 4.238 11 C 0.206 3.794 12 N -0.525 5.525 13 C 0.308 3.692 14 N -0.519 5.519 15 C 0.149 3.851 16 C -0.122 4.122 17 C 0.146 3.854 18 N -0.592 5.592 19 C -0.254 4.254 20 H 0.064 0.936 21 C 0.009 3.991 22 N -0.904 5.904 23 Si 0.902 3.098 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.288 1.288 27 C 0.168 3.832 28 C -0.129 4.129 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.180 0.820 37 H 0.201 0.799 38 H 0.202 0.798 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.020 0.980 43 H 0.254 0.746 44 H 0.102 0.898 45 H 0.017 0.983 46 H 0.058 0.942 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.053 1.120 15.886 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.097 0.903 4 C -0.155 4.155 5 C -0.055 4.055 6 C -0.034 4.034 7 N -0.334 5.334 8 C 0.371 3.629 9 O -0.411 6.411 10 C -0.246 4.246 11 C 0.039 3.961 12 N -0.238 5.238 13 C 0.021 3.979 14 N -0.233 5.233 15 C -0.017 4.017 16 C -0.161 4.161 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.383 4.383 20 H 0.081 0.919 21 C -0.189 4.189 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.215 1.215 27 C 0.043 3.957 28 C -0.169 4.169 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.197 0.803 37 H 0.217 0.783 38 H 0.217 0.783 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.120 0.880 45 H 0.035 0.965 46 H 0.076 0.924 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.225 0.805 16.645 17.789 hybrid contribution 0.480 0.344 -1.194 1.332 sum -5.745 1.149 15.450 16.524 Atomic orbital electron populations 1.22150 0.94041 1.02551 1.03517 1.22070 0.94907 0.95720 0.83922 0.90329 1.22974 0.95388 1.00550 0.96632 1.21013 0.95576 0.98249 0.90686 1.22805 0.86651 0.96169 0.97773 1.48544 1.27862 1.48050 1.08980 1.17373 0.82800 0.82048 0.80723 1.90731 1.28441 1.41486 1.80470 1.21823 1.00413 1.03954 0.98382 1.23485 0.97068 0.89209 0.86374 1.68575 1.12744 1.08601 1.33868 1.25320 0.86832 0.92441 0.93275 1.68617 1.33789 1.18980 1.01878 1.25241 0.91049 0.86406 0.98956 1.21965 0.97837 0.96087 1.00201 1.20960 0.97956 0.89916 0.89217 1.43986 1.28774 1.05814 1.52951 1.19193 0.90778 1.28621 0.99749 0.91874 1.25310 0.96882 0.99836 0.96885 1.69879 1.27924 1.30847 1.26145 0.86230 0.81950 0.77413 0.81269 1.20245 1.21670 1.21516 1.20988 0.93338 0.93072 0.88330 1.22194 0.99882 0.93650 1.01187 0.89935 0.91675 0.92762 0.90596 0.88694 0.90491 0.90471 0.80279 0.78281 0.78258 0.93050 0.91983 0.92799 0.96179 0.93552 0.88036 0.96479 0.92355 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 8.77 37.15 0.33 -1.67 16 2 C 0.14 1.69 3.42 -66.34 -0.23 1.46 16 3 H 0.08 0.98 7.75 -51.93 -0.40 0.58 16 4 C -0.12 -1.58 4.35 -24.86 -0.11 -1.69 16 5 C -0.05 -0.76 0.55 -154.08 -0.09 -0.84 16 6 C 0.09 1.02 4.06 -3.31 -0.01 1.00 16 7 N -0.60 -7.41 3.25 -164.53 -0.53 -7.94 16 8 C 0.58 7.56 7.54 -12.34 -0.09 7.47 16 9 O -0.53 -8.01 14.29 5.32 0.08 -7.94 16 10 C -0.24 -2.73 5.90 -104.69 -0.62 -3.35 16 11 C 0.21 2.22 10.88 -16.78 -0.18 2.04 16 12 N -0.52 -5.59 10.42 -14.24 -0.15 -5.74 16 13 C 0.31 2.96 12.27 -92.03 -1.13 1.83 16 14 N -0.52 -5.72 10.42 -14.24 -0.15 -5.87 16 15 C 0.15 1.62 9.87 -16.77 -0.17 1.45 16 16 C -0.12 -1.82 4.72 -26.93 -0.13 -1.95 16 17 C 0.15 2.74 6.18 -3.64 -0.02 2.71 16 18 N -0.59 -13.57 2.99 -172.16 -0.51 -14.08 16 19 C -0.25 -6.55 9.55 -15.06 -0.14 -6.69 16 20 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 21 C 0.01 0.25 5.32 -17.43 -0.09 0.16 16 22 N -0.90 -24.75 10.61 55.49 0.59 -24.16 16 23 Si 0.90 20.81 29.56 -169.99 -5.02 15.79 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.17 3.63 4.99 -3.64 -0.02 3.61 16 28 C -0.13 -2.13 4.73 -26.94 -0.13 -2.26 16 29 H 0.08 1.11 5.93 -51.93 -0.31 0.80 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.04 7.92 -51.93 -0.41 0.63 16 33 H 0.09 1.39 6.09 -51.93 -0.32 1.08 16 34 H 0.08 0.81 6.54 -51.93 -0.34 0.47 16 35 H 0.08 0.83 6.29 -51.93 -0.33 0.51 16 36 H 0.18 1.70 7.76 -52.49 -0.41 1.29 16 37 H 0.20 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.20 1.98 2.97 -52.77 -0.16 1.82 16 39 H 0.05 0.68 7.47 -51.93 -0.39 0.30 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 42 H 0.02 0.38 6.48 -51.93 -0.34 0.04 16 43 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.10 2.55 5.88 -51.93 -0.31 2.24 16 45 H 0.02 0.39 7.56 -51.93 -0.39 -0.01 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 LS Contribution 357.41 15.07 5.39 5.39 Total: -1.00 -29.40 357.41 -9.73 -39.13 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.58 Total: 2.14 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -2.83 Total: 3.29 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.76 Total: -57.80 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.08 Total: -7.94 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.40 -9.73 -39.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086918242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.747 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds