Wall clock time and date at job start Tue Mar 31 2020 16:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.31590 * 2 1 4 4 C 1.55012 * 110.35833 * 237.67885 * 2 1 3 5 5 C 1.54536 * 101.53203 * 204.75536 * 4 2 1 6 6 C 1.53694 * 103.71636 * 34.63691 * 5 4 2 7 7 N 1.47184 * 107.10457 * 338.77853 * 6 5 4 8 8 C 1.34774 * 125.66003 * 178.41675 * 7 6 5 9 9 O 1.21551 * 120.00121 * 174.49992 * 8 7 6 10 10 C 1.47832 * 120.00357 * 354.76675 * 8 7 6 11 11 C 1.39944 * 120.94401 * 187.46058 * 10 8 7 12 12 N 1.32151 * 118.92327 * 179.69872 * 11 10 8 13 13 C 1.31864 * 120.96719 * 0.60957 * 12 11 10 14 14 N 1.31870 * 122.09704 * 359.66084 * 13 12 11 15 15 C 1.32147 * 120.96589 * 0.02562 * 14 13 12 16 16 C 1.52278 * 110.16169 * 276.40954 * 5 4 2 17 17 C 1.53323 * 109.41293 * 297.16381 * 16 5 4 18 18 N 1.46926 * 108.70642 * 306.49378 * 17 16 5 19 19 C 1.36937 * 120.56126 * 234.25674 * 18 17 16 20 20 H 1.07995 * 120.00317 * 35.44037 * 19 18 17 21 21 C 1.38815 * 120.00119 * 215.44837 * 19 18 17 22 22 N 1.31625 * 119.99778 * 355.86233 * 21 19 18 23 23 Si 1.86796 * 120.00363 * 175.85772 * 21 19 18 24 24 H 1.48499 * 109.46877 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46730 * 119.99717 * 23 21 19 26 26 H 1.48501 * 109.47397 * 240.00170 * 23 21 19 27 27 C 1.46934 * 118.87890 * 54.22826 * 18 17 16 28 28 C 1.52266 * 110.16162 * 153.27864 * 5 4 2 29 29 H 1.08994 * 109.47451 * 299.24733 * 1 2 3 30 30 H 1.09000 * 109.46945 * 59.25731 * 1 2 3 31 31 H 1.09001 * 109.46727 * 179.25069 * 1 2 3 32 32 H 1.09000 * 111.01342 * 322.81622 * 4 2 1 33 33 H 1.09001 * 111.01699 * 86.65689 * 4 2 1 34 34 H 1.09000 * 110.01817 * 219.35212 * 6 5 4 35 35 H 1.09000 * 109.80686 * 98.08655 * 6 5 4 36 36 H 1.07998 * 120.53475 * 359.97374 * 11 10 8 37 37 H 1.08006 * 118.95091 * 179.67762 * 13 12 11 38 38 H 1.07997 * 120.53775 * 180.02562 * 15 14 13 39 39 H 1.08992 * 109.48258 * 57.14441 * 16 5 4 40 40 H 1.08995 * 109.47968 * 177.18731 * 16 5 4 41 41 H 1.09001 * 109.59712 * 186.72656 * 17 16 5 42 42 H 1.08997 * 109.72476 * 66.33374 * 17 16 5 43 43 H 0.96996 * 119.99782 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.60465 * 185.99769 * 27 18 17 45 45 H 1.08999 * 109.72661 * 65.60054 * 27 18 17 46 46 H 1.09003 * 109.48474 * 182.80698 * 28 5 4 47 47 H 1.09002 * 109.48412 * 302.82978 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0692 -0.7770 -1.2281 5 6 3.4658 -1.2119 -0.7296 6 6 3.2523 -1.4739 0.7697 7 7 2.0429 -0.7368 1.1700 8 6 1.4981 -0.7314 2.4027 9 8 0.5534 -0.0064 2.6465 10 6 2.0531 -1.6028 3.4601 11 6 1.4122 -1.7302 4.6976 12 7 1.9402 -2.5249 5.6120 13 6 3.0589 -3.1818 5.3758 14 7 3.6981 -3.0864 4.2263 15 6 3.2377 -2.3191 3.2539 16 6 4.4706 -0.0864 -0.9356 17 6 4.6058 0.2081 -2.4342 18 7 4.9202 -1.0449 -3.1342 19 6 6.0181 -1.1312 -3.9481 20 1 6.9227 -0.5995 -3.6928 21 6 5.9682 -1.9021 -5.1014 22 7 4.8948 -2.6146 -5.3708 23 14 7.4243 -1.9282 -6.2712 24 1 8.4986 -1.0491 -5.7438 25 1 7.9367 -3.3168 -6.3927 26 1 6.9954 -1.4401 -7.6065 27 6 4.0370 -2.2039 -2.9457 28 6 3.9057 -2.4828 -1.4438 29 1 -0.3634 0.5021 0.8966 30 1 -0.3633 0.5253 -0.8833 31 1 -0.3633 -1.0276 -0.0134 32 1 1.4452 -1.6434 -1.4473 33 1 2.1496 -0.1256 -2.0984 34 1 4.1109 -1.1147 1.3372 35 1 3.1107 -2.5409 0.9417 36 1 0.4985 -1.1913 4.9004 37 1 3.4644 -3.8184 6.1483 38 1 3.7665 -2.2464 2.3151 39 1 4.1246 0.8088 -0.4191 40 1 5.4391 -0.3860 -0.5353 41 1 5.4086 0.9278 -2.5944 42 1 3.6690 0.6146 -2.8153 43 1 4.8601 -3.1536 -6.1765 44 1 4.4647 -3.0744 -3.4431 45 1 3.0540 -1.9895 -3.3650 46 1 4.8685 -2.8071 -1.0488 47 1 3.1644 -3.2655 -1.2827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086918242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:24 Heat of formation + Delta-G solvation = 44.354962 kcal Electronic energy + Delta-G solvation = -29294.174529 eV Core-core repulsion = 25477.818884 eV Total energy + Delta-G solvation = -3816.355645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.54089 -41.43373 -39.73338 -37.52451 -35.14695 -34.72632 -34.12584 -32.67266 -32.01681 -31.48484 -28.80930 -27.51581 -26.48979 -25.96829 -25.26817 -23.98844 -23.04429 -22.58977 -20.76042 -19.74174 -19.02047 -18.57847 -18.23734 -17.82918 -17.43867 -16.81941 -16.54833 -15.87675 -15.74927 -15.42452 -15.23120 -15.00629 -14.93283 -14.75195 -14.71148 -14.35539 -14.22381 -13.74844 -13.53739 -13.15107 -13.05575 -12.99826 -12.79480 -12.69380 -12.61972 -12.25605 -12.14215 -12.10752 -11.99504 -11.83282 -11.71267 -11.39016 -11.07629 -10.99861 -10.90512 -10.74653 -10.45815 -10.38404 -9.78223 -8.46551 -7.81191 -5.36452 -0.67945 -0.10916 1.47561 1.50619 1.59211 1.65704 1.73619 2.52890 2.68799 3.01137 3.03351 3.22627 3.30523 3.36621 3.48983 3.62805 3.77907 3.80479 3.87172 4.07228 4.22741 4.27728 4.32808 4.35497 4.45434 4.58236 4.60619 4.65998 4.67855 4.73853 4.85756 4.94609 4.99327 5.10900 5.14270 5.17363 5.24185 5.27074 5.32153 5.36304 5.47459 5.49275 5.66554 5.71161 5.72533 5.96783 6.34281 6.52867 6.86831 6.92663 7.25082 7.94509 8.45854 9.21049 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019370 B = 0.003097 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.179680 B = 9037.810423 C = 9937.187688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.139 3.861 3 H 0.083 0.917 4 C -0.112 4.112 5 C -0.051 4.051 6 C 0.095 3.905 7 N -0.601 5.601 8 C 0.585 3.415 9 O -0.557 6.557 10 C -0.249 4.249 11 C 0.205 3.795 12 N -0.534 5.534 13 C 0.311 3.689 14 N -0.533 5.533 15 C 0.153 3.847 16 C -0.109 4.109 17 C 0.142 3.858 18 N -0.611 5.611 19 C -0.259 4.259 20 H 0.062 0.938 21 C -0.043 4.043 22 N -0.931 5.931 23 Si 0.961 3.039 24 H -0.268 1.268 25 H -0.292 1.292 26 H -0.294 1.294 27 C 0.176 3.824 28 C -0.116 4.116 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.187 0.813 37 H 0.234 0.766 38 H 0.210 0.790 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.021 0.979 43 H 0.248 0.752 44 H 0.062 0.938 45 H -0.002 1.002 46 H 0.057 0.943 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 1.246 17.907 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.101 0.899 4 C -0.150 4.150 5 C -0.051 4.051 6 C -0.027 4.027 7 N -0.333 5.333 8 C 0.374 3.626 9 O -0.438 6.438 10 C -0.256 4.256 11 C 0.038 3.962 12 N -0.248 5.248 13 C 0.025 3.975 14 N -0.247 5.247 15 C -0.013 4.013 16 C -0.148 4.148 17 C 0.017 3.983 18 N -0.334 5.334 19 C -0.390 4.390 20 H 0.080 0.920 21 C -0.238 4.238 22 N -0.577 5.577 23 Si 0.789 3.211 24 H -0.192 1.192 25 H -0.219 1.219 26 H -0.221 1.221 27 C 0.050 3.950 28 C -0.155 4.155 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.204 0.796 37 H 0.250 0.750 38 H 0.225 0.775 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.039 0.961 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.016 0.984 46 H 0.076 0.924 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.780 0.942 18.692 19.588 hybrid contribution 0.331 0.315 -1.798 1.855 sum -5.448 1.257 16.894 17.795 Atomic orbital electron populations 1.22074 0.93774 1.02290 1.03458 1.22019 0.95101 0.95709 0.83449 0.89919 1.22858 0.95185 1.00338 0.96614 1.20872 0.95382 0.96510 0.92366 1.22750 0.87075 0.97098 0.95737 1.48523 1.27960 1.47967 1.08818 1.17534 0.82386 0.81816 0.80910 1.90724 1.29561 1.42594 1.80888 1.21691 1.01071 1.04586 0.98258 1.23669 0.97245 0.89006 0.86235 1.68661 1.13310 1.08965 1.33845 1.26014 0.86141 0.91834 0.93502 1.68690 1.34217 1.19365 1.02398 1.25341 0.90667 0.85948 0.99302 1.21812 0.98355 0.97468 0.97188 1.21092 0.97652 0.88180 0.91381 1.44223 1.28277 1.07676 1.53262 1.19469 0.91736 1.27742 1.00050 0.92020 1.25961 0.99212 1.00243 0.98418 1.70069 1.29609 1.31748 1.26235 0.85302 0.79572 0.77131 0.79052 1.19224 1.21916 1.22092 1.20716 0.91597 0.91269 0.91412 1.21953 1.00552 0.95541 0.97491 0.91089 0.90562 0.93140 0.90828 0.90069 0.88564 0.89100 0.79572 0.75044 0.77453 0.90656 0.91896 0.93307 0.96142 0.94207 0.91954 0.98385 0.92447 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 8.77 71.98 0.63 -2.98 16 2 C 0.14 3.20 3.42 45.49 0.16 3.36 16 3 H 0.08 1.87 7.75 -2.38 -0.02 1.85 16 4 C -0.11 -2.86 4.35 31.81 0.14 -2.72 16 5 C -0.05 -1.30 0.55 -51.91 -0.03 -1.33 16 6 C 0.10 1.91 4.06 86.48 0.35 2.26 16 7 N -0.60 -13.35 3.25 -792.74 -2.57 -15.92 16 8 C 0.58 14.03 7.54 86.78 0.65 14.69 16 9 O -0.56 -16.02 14.29 -3.88 -0.06 -16.08 16 10 C -0.25 -5.16 5.90 -19.91 -0.12 -5.28 16 11 C 0.21 4.06 10.88 85.06 0.93 4.98 16 12 N -0.53 -10.17 10.42 -198.98 -2.07 -12.25 16 13 C 0.31 5.11 12.27 180.84 2.22 7.33 16 14 N -0.53 -10.27 10.42 -198.98 -2.07 -12.35 16 15 C 0.15 2.91 9.87 85.06 0.84 3.75 16 16 C -0.11 -3.03 4.72 30.46 0.14 -2.89 16 17 C 0.14 5.24 6.18 86.41 0.53 5.77 16 18 N -0.61 -28.18 2.99 -698.59 -2.09 -30.27 16 19 C -0.26 -13.53 9.55 84.03 0.80 -12.73 16 20 H 0.06 3.17 7.83 -2.91 -0.02 3.15 16 21 C -0.04 -2.29 5.32 84.86 0.45 -1.84 16 22 N -0.93 -52.50 10.61 21.65 0.23 -52.27 16 23 Si 0.96 43.39 29.56 68.60 2.03 45.42 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 27 C 0.18 7.69 4.99 86.40 0.43 8.12 16 28 C -0.12 -3.68 4.73 30.46 0.14 -3.54 16 29 H 0.07 1.83 5.93 -2.39 -0.01 1.81 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.93 7.92 -2.39 -0.02 1.91 16 33 H 0.08 2.32 6.09 -2.39 -0.01 2.31 16 34 H 0.10 1.64 6.54 -2.39 -0.02 1.63 16 35 H 0.09 1.65 6.29 -2.39 -0.02 1.63 16 36 H 0.19 3.27 7.76 -2.91 -0.02 3.25 16 37 H 0.23 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.21 3.43 2.97 -3.18 -0.01 3.42 16 39 H 0.07 1.77 7.47 -2.39 -0.02 1.75 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.05 1.81 7.93 -2.39 -0.02 1.79 16 42 H 0.02 0.76 6.48 -2.39 -0.02 0.75 16 43 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 44 H 0.06 3.24 5.88 -2.39 -0.01 3.23 16 45 H 0.00 -0.09 7.56 -2.39 -0.02 -0.11 16 46 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 47 H 0.07 1.91 8.11 -2.39 -0.02 1.89 16 Total: -1.00 -64.09 357.41 2.66 -61.43 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.99 Total: 15.34 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 8.27 Total: 16.94 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -8.58 Total: -123.06 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.06 Total: -16.08 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -64.09 2.66 -61.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086918242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.786 kcal (2) G-P(sol) polarization free energy of solvation -64.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds