Wall clock time and date at job start Tue Mar 31 2020 16:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 110.32033 * 2 1 4 4 C 1.55020 * 110.44394 * 237.73466 * 2 1 3 5 5 C 1.54517 * 101.53708 * 204.72140 * 4 2 1 6 6 C 1.53701 * 103.64522 * 34.81706 * 5 4 2 7 7 N 1.47185 * 107.11096 * 338.46293 * 6 5 4 8 8 C 1.34771 * 125.65918 * 178.46751 * 7 6 5 9 9 O 1.21516 * 119.99810 * 185.43112 * 8 7 6 10 10 C 1.48128 * 120.00326 * 5.43455 * 8 7 6 11 11 C 1.40121 * 121.14557 * 173.46684 * 10 8 7 12 12 C 1.38508 * 117.82062 * 179.73721 * 11 10 8 13 13 N 1.31914 * 119.97031 * 0.54809 * 12 11 10 14 14 N 1.28282 * 122.51616 * 359.71312 * 13 12 11 15 15 C 1.31919 * 122.32601 * 0.02562 * 14 13 12 16 16 C 1.52270 * 110.20706 * 276.40609 * 5 4 2 17 17 C 1.53308 * 109.42086 * 177.79611 * 16 5 4 18 18 N 1.46923 * 108.70836 * 53.50944 * 17 16 5 19 19 C 1.36934 * 120.56690 * 125.74405 * 18 17 16 20 20 H 1.08000 * 120.00042 * 210.71685 * 19 18 17 21 21 C 1.38815 * 119.99906 * 30.71502 * 19 18 17 22 22 N 1.31617 * 120.00036 * 9.52289 * 21 19 18 23 23 Si 1.86797 * 120.00094 * 189.52031 * 21 19 18 24 24 H 1.48497 * 109.47025 * 90.00130 * 23 21 19 25 25 H 1.48495 * 109.47316 * 210.00288 * 23 21 19 26 26 H 1.48498 * 109.47262 * 330.00377 * 23 21 19 27 27 C 1.46939 * 118.87309 * 305.76700 * 18 17 16 28 28 C 1.52273 * 110.20996 * 153.21415 * 5 4 2 29 29 H 1.08995 * 109.46684 * 299.25137 * 1 2 3 30 30 H 1.08995 * 109.46846 * 59.24946 * 1 2 3 31 31 H 1.08997 * 109.47308 * 179.25006 * 1 2 3 32 32 H 1.09001 * 111.01491 * 86.65920 * 4 2 1 33 33 H 1.09000 * 111.01715 * 322.78362 * 4 2 1 34 34 H 1.08999 * 109.90785 * 97.83122 * 6 5 4 35 35 H 1.09000 * 109.91234 * 219.09349 * 6 5 4 36 36 H 1.07995 * 121.08972 * 359.97438 * 11 10 8 37 37 H 1.08000 * 120.01090 * 180.25734 * 12 11 10 38 38 H 1.08003 * 120.17639 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47861 * 297.77985 * 16 5 4 40 40 H 1.09007 * 109.47677 * 57.81108 * 16 5 4 41 41 H 1.08999 * 109.60323 * 173.27710 * 17 16 5 42 42 H 1.09001 * 109.60171 * 293.74214 * 17 16 5 43 43 H 0.96994 * 120.00506 * 179.97438 * 22 21 19 44 44 H 1.09005 * 109.60026 * 294.48223 * 27 18 17 45 45 H 1.09000 * 109.59893 * 174.01044 * 27 18 17 46 46 H 1.08997 * 109.48575 * 302.19765 * 28 5 4 47 47 H 1.09008 * 109.47546 * 62.23582 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0221 0.0000 4 6 2.0715 -0.7754 -1.2283 5 6 3.4680 -1.2090 -0.7290 6 6 3.2506 -1.4764 0.7689 7 7 2.0429 -0.7369 1.1700 8 6 1.4963 -0.7341 2.4019 9 8 0.4405 -0.1650 2.5968 10 6 2.1825 -1.4247 3.5183 11 6 1.7089 -1.3241 4.8333 12 6 2.4005 -2.0027 5.8231 13 7 3.4736 -2.7049 5.5141 14 7 3.9154 -2.7967 4.3133 15 6 3.3280 -2.1939 3.2975 16 6 4.4724 -0.0828 -0.9327 17 6 5.8374 -0.5113 -0.3817 18 7 6.2089 -1.7961 -0.9899 19 6 7.4079 -1.9401 -1.6355 20 1 7.4964 -2.6287 -2.4628 21 6 8.5095 -1.2011 -1.2266 22 7 8.4582 -0.5063 -0.1099 23 14 10.0648 -1.1928 -2.2611 24 1 9.9982 -0.0835 -3.2461 25 1 11.2446 -1.0019 -1.3797 26 1 10.1881 -2.4862 -2.9800 27 6 5.2718 -2.9238 -0.8940 28 6 3.9105 -2.4796 -1.4419 29 1 -0.3632 0.5022 0.8966 30 1 -0.3633 0.5254 -0.8831 31 1 -0.3634 -1.0275 -0.0135 32 1 2.1525 -0.1231 -2.0978 33 1 1.4488 -1.6425 -1.4488 34 1 3.1059 -2.5434 0.9382 35 1 4.1096 -1.1209 1.3380 36 1 0.8312 -0.7398 5.0667 37 1 2.0640 -1.9530 6.8481 38 1 3.7302 -2.2945 2.3002 39 1 4.5624 0.1359 -1.9968 40 1 4.1312 0.8084 -0.4059 41 1 6.5853 0.2413 -0.6317 42 1 5.7760 -0.6234 0.7008 43 1 9.2281 0.0097 0.1761 44 1 5.1660 -3.2237 0.1486 45 1 5.6468 -3.7618 -1.4816 46 1 3.1759 -3.2666 -1.2718 47 1 3.9949 -2.2857 -2.5113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086945297.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:09 Heat of formation + Delta-G solvation = 72.385509 kcal Electronic energy + Delta-G solvation = -29734.105339 eV Core-core repulsion = 25918.965190 eV Total energy + Delta-G solvation = -3815.140149 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.55422 -40.41222 -38.62664 -36.12632 -33.88132 -33.27253 -32.94161 -31.37830 -30.88524 -30.06171 -27.38219 -26.65463 -25.49789 -24.46678 -24.27015 -22.63643 -21.96228 -20.95240 -19.80515 -18.66293 -18.02560 -17.22075 -16.87124 -16.52469 -16.22221 -15.43395 -15.06714 -14.96484 -14.62925 -14.20390 -14.16620 -13.98493 -13.85624 -13.38419 -13.28555 -13.14665 -12.86646 -12.63679 -12.30386 -12.02311 -11.91835 -11.55857 -11.33150 -11.22308 -11.14019 -10.86833 -10.79824 -10.51476 -10.40503 -10.32183 -10.26707 -10.22281 -10.17726 -9.91232 -9.62359 -9.56018 -9.48106 -8.78563 -8.50647 -6.67525 -5.81831 -3.30446 0.16998 0.71398 2.58970 2.67466 3.35061 3.42275 3.43315 3.48651 3.91700 4.03455 4.25268 4.36503 4.44956 4.51329 4.63985 4.69176 4.84673 5.05552 5.14422 5.22244 5.28617 5.35213 5.38443 5.46463 5.51738 5.55832 5.63177 5.65828 5.70089 5.81474 5.91221 5.93508 5.98542 6.08089 6.11016 6.19417 6.34429 6.42562 6.51217 6.54133 6.61594 6.74448 6.85986 7.27151 7.31427 7.63842 7.75121 7.87693 8.43538 8.51567 9.18205 9.79289 10.35584 11.25583 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.004128 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.986794 B = 6781.384857 C = 8302.028126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 H 0.080 0.920 4 C -0.124 4.124 5 C -0.053 4.053 6 C 0.088 3.912 7 N -0.599 5.599 8 C 0.579 3.421 9 O -0.531 6.531 10 C -0.131 4.131 11 C -0.061 4.061 12 C 0.031 3.969 13 N -0.230 5.230 14 N -0.235 5.235 15 C 0.041 3.959 16 C -0.130 4.130 17 C 0.168 3.832 18 N -0.590 5.590 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.005 3.995 22 N -0.905 5.905 23 Si 0.904 3.096 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.141 3.859 28 C -0.120 4.120 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.161 0.839 37 H 0.178 0.822 38 H 0.205 0.795 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.017 0.983 43 H 0.254 0.746 44 H 0.018 0.982 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.134 0.016 3.660 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.098 0.902 4 C -0.162 4.162 5 C -0.054 4.054 6 C -0.034 4.034 7 N -0.332 5.332 8 C 0.367 3.633 9 O -0.409 6.409 10 C -0.146 4.146 11 C -0.091 4.091 12 C -0.133 4.133 13 N -0.072 5.072 14 N -0.076 5.076 15 C -0.123 4.123 16 C -0.170 4.170 17 C 0.042 3.958 18 N -0.312 5.312 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.193 4.193 22 N -0.550 5.550 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.015 3.985 28 C -0.160 4.160 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.178 0.822 37 H 0.195 0.805 38 H 0.221 0.779 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.113 0.887 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.319 -0.568 4.425 15.955 hybrid contribution -0.266 0.999 -0.899 1.370 sum -15.585 0.431 3.526 15.985 Atomic orbital electron populations 1.22203 0.93848 1.02599 1.03447 1.22036 0.94916 0.95718 0.83936 0.90191 1.23004 0.96275 1.00223 0.96670 1.20993 0.94562 0.98055 0.91795 1.22850 0.86993 0.95865 0.97674 1.48524 1.28119 1.47766 1.08791 1.17503 0.84292 0.80404 0.81139 1.90709 1.21627 1.45713 1.82854 1.21214 0.97660 1.00162 0.95539 1.22586 0.99439 0.95590 0.91521 1.24382 0.93160 0.94245 1.01495 1.72921 1.09598 1.12245 1.12459 1.73221 1.23917 1.15721 0.94724 1.26269 0.91510 0.91221 1.03259 1.22171 0.97894 0.95154 1.01754 1.20908 0.91568 0.89510 0.93784 1.43985 1.16805 1.05472 1.64967 1.19188 0.86210 1.23707 1.09145 0.91735 1.25136 0.97458 1.00734 0.96005 1.69933 1.30089 1.33698 1.21240 0.86262 0.83005 0.77912 0.79395 1.21483 1.21680 1.20423 1.20985 0.88846 0.91486 0.97193 1.21970 0.98952 0.94645 1.00421 0.89620 0.92073 0.92749 0.89637 0.90689 0.90384 0.88979 0.82150 0.80459 0.77904 0.91890 0.93225 0.88672 0.96546 0.93544 0.96462 0.92494 0.92824 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 8.64 37.16 0.32 -1.51 16 2 C 0.14 1.63 3.46 -66.32 -0.23 1.40 16 3 H 0.08 0.98 7.76 -51.93 -0.40 0.57 16 4 C -0.12 -1.41 5.41 -24.87 -0.13 -1.54 16 5 C -0.05 -0.74 0.53 -154.09 -0.08 -0.82 16 6 C 0.09 1.19 3.06 -3.30 -0.01 1.18 16 7 N -0.60 -7.89 3.25 -164.46 -0.53 -8.42 16 8 C 0.58 8.04 7.66 -12.20 -0.09 7.95 16 9 O -0.53 -8.13 14.04 5.35 0.08 -8.05 16 10 C -0.13 -1.72 5.92 -104.57 -0.62 -2.33 16 11 C -0.06 -0.66 9.77 -38.78 -0.38 -1.04 16 12 C 0.03 0.33 11.30 -17.42 -0.20 0.13 16 13 N -0.23 -3.28 11.48 30.53 0.35 -2.93 16 14 N -0.23 -3.71 11.49 30.78 0.35 -3.36 16 15 C 0.04 0.57 9.94 -16.96 -0.17 0.41 16 16 C -0.13 -2.16 4.78 -26.94 -0.13 -2.29 16 17 C 0.17 3.63 4.98 -3.65 -0.02 3.61 16 18 N -0.59 -13.48 2.98 -172.16 -0.51 -13.99 16 19 C -0.25 -6.55 9.59 -15.06 -0.14 -6.69 16 20 H 0.06 1.65 7.85 -52.49 -0.41 1.24 16 21 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 22 N -0.91 -25.25 10.91 55.49 0.61 -24.64 16 23 Si 0.90 21.08 29.56 -169.99 -5.03 16.05 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.14 2.63 6.24 -3.64 -0.02 2.60 16 28 C -0.12 -1.76 4.70 -26.94 -0.13 -1.89 16 29 H 0.09 1.11 5.88 -51.93 -0.31 0.81 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.91 8.01 -51.93 -0.42 0.49 16 33 H 0.07 0.80 7.93 -51.93 -0.41 0.39 16 34 H 0.08 0.99 6.21 -51.93 -0.32 0.67 16 35 H 0.09 1.42 4.71 -51.93 -0.24 1.17 16 36 H 0.16 1.40 7.81 -52.49 -0.41 0.99 16 37 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.21 2.81 2.93 -52.83 -0.15 2.66 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.77 7.49 -51.93 -0.39 0.38 16 41 H 0.10 2.40 5.96 -51.93 -0.31 2.09 16 42 H 0.02 0.38 6.53 -51.93 -0.34 0.04 16 43 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.02 0.32 7.47 -51.93 -0.39 -0.07 16 45 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 46 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -30.31 357.63 -8.01 -38.31 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.59 Total: 2.45 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -2.12 Total: -0.80 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.26 Total: -53.35 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.08 Total: -8.05 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.31 -8.01 -38.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086945297.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.699 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds