Wall clock time and date at job start Tue Mar 31 2020 16:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 110.32033 * 2 1 4 4 C 1.55020 * 110.44394 * 237.73466 * 2 1 3 5 5 C 1.54517 * 101.53708 * 204.72140 * 4 2 1 6 6 C 1.53701 * 103.64522 * 34.81706 * 5 4 2 7 7 N 1.47185 * 107.11096 * 338.46293 * 6 5 4 8 8 C 1.34771 * 125.65918 * 178.46751 * 7 6 5 9 9 O 1.21516 * 119.99810 * 185.43112 * 8 7 6 10 10 C 1.48128 * 120.00326 * 5.43455 * 8 7 6 11 11 C 1.40121 * 121.14557 * 173.46684 * 10 8 7 12 12 C 1.38508 * 117.82062 * 179.73721 * 11 10 8 13 13 N 1.31914 * 119.97031 * 0.54809 * 12 11 10 14 14 N 1.28282 * 122.51616 * 359.71312 * 13 12 11 15 15 C 1.31919 * 122.32601 * 0.02562 * 14 13 12 16 16 C 1.52270 * 110.20706 * 276.40609 * 5 4 2 17 17 C 1.53308 * 109.42086 * 177.79611 * 16 5 4 18 18 N 1.46923 * 108.70836 * 53.50944 * 17 16 5 19 19 C 1.36934 * 120.56690 * 125.74405 * 18 17 16 20 20 H 1.08000 * 120.00042 * 210.71685 * 19 18 17 21 21 C 1.38815 * 119.99906 * 30.71502 * 19 18 17 22 22 N 1.31617 * 120.00036 * 9.52289 * 21 19 18 23 23 Si 1.86797 * 120.00094 * 189.52031 * 21 19 18 24 24 H 1.48497 * 109.47025 * 90.00130 * 23 21 19 25 25 H 1.48495 * 109.47316 * 210.00288 * 23 21 19 26 26 H 1.48498 * 109.47262 * 330.00377 * 23 21 19 27 27 C 1.46939 * 118.87309 * 305.76700 * 18 17 16 28 28 C 1.52273 * 110.20996 * 153.21415 * 5 4 2 29 29 H 1.08995 * 109.46684 * 299.25137 * 1 2 3 30 30 H 1.08995 * 109.46846 * 59.24946 * 1 2 3 31 31 H 1.08997 * 109.47308 * 179.25006 * 1 2 3 32 32 H 1.09001 * 111.01491 * 86.65920 * 4 2 1 33 33 H 1.09000 * 111.01715 * 322.78362 * 4 2 1 34 34 H 1.08999 * 109.90785 * 97.83122 * 6 5 4 35 35 H 1.09000 * 109.91234 * 219.09349 * 6 5 4 36 36 H 1.07995 * 121.08972 * 359.97438 * 11 10 8 37 37 H 1.08000 * 120.01090 * 180.25734 * 12 11 10 38 38 H 1.08003 * 120.17639 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.47861 * 297.77985 * 16 5 4 40 40 H 1.09007 * 109.47677 * 57.81108 * 16 5 4 41 41 H 1.08999 * 109.60323 * 173.27710 * 17 16 5 42 42 H 1.09001 * 109.60171 * 293.74214 * 17 16 5 43 43 H 0.96994 * 120.00506 * 179.97438 * 22 21 19 44 44 H 1.09005 * 109.60026 * 294.48223 * 27 18 17 45 45 H 1.09000 * 109.59893 * 174.01044 * 27 18 17 46 46 H 1.08997 * 109.48575 * 302.19765 * 28 5 4 47 47 H 1.09008 * 109.47546 * 62.23582 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0221 0.0000 4 6 2.0715 -0.7754 -1.2283 5 6 3.4680 -1.2090 -0.7290 6 6 3.2506 -1.4764 0.7689 7 7 2.0429 -0.7369 1.1700 8 6 1.4963 -0.7341 2.4019 9 8 0.4405 -0.1650 2.5968 10 6 2.1825 -1.4247 3.5183 11 6 1.7089 -1.3241 4.8333 12 6 2.4005 -2.0027 5.8231 13 7 3.4736 -2.7049 5.5141 14 7 3.9154 -2.7967 4.3133 15 6 3.3280 -2.1939 3.2975 16 6 4.4724 -0.0828 -0.9327 17 6 5.8374 -0.5113 -0.3817 18 7 6.2089 -1.7961 -0.9899 19 6 7.4079 -1.9401 -1.6355 20 1 7.4964 -2.6287 -2.4628 21 6 8.5095 -1.2011 -1.2266 22 7 8.4582 -0.5063 -0.1099 23 14 10.0648 -1.1928 -2.2611 24 1 9.9982 -0.0835 -3.2461 25 1 11.2446 -1.0019 -1.3797 26 1 10.1881 -2.4862 -2.9800 27 6 5.2718 -2.9238 -0.8940 28 6 3.9105 -2.4796 -1.4419 29 1 -0.3632 0.5022 0.8966 30 1 -0.3633 0.5254 -0.8831 31 1 -0.3634 -1.0275 -0.0135 32 1 2.1525 -0.1231 -2.0978 33 1 1.4488 -1.6425 -1.4488 34 1 3.1059 -2.5434 0.9382 35 1 4.1096 -1.1209 1.3380 36 1 0.8312 -0.7398 5.0667 37 1 2.0640 -1.9530 6.8481 38 1 3.7302 -2.2945 2.3002 39 1 4.5624 0.1359 -1.9968 40 1 4.1312 0.8084 -0.4059 41 1 6.5853 0.2413 -0.6317 42 1 5.7760 -0.6234 0.7008 43 1 9.2281 0.0097 0.1761 44 1 5.1660 -3.2237 0.1486 45 1 5.6468 -3.7618 -1.4816 46 1 3.1759 -3.2666 -1.2718 47 1 3.9949 -2.2857 -2.5113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086945297.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:07 Heat of formation + Delta-G solvation = 53.830311 kcal Electronic energy + Delta-G solvation = -29734.909953 eV Core-core repulsion = 25918.965190 eV Total energy + Delta-G solvation = -3815.944763 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.58720 -41.48582 -39.82420 -37.54850 -34.96077 -34.75546 -33.93913 -32.64283 -32.24412 -31.60073 -28.80681 -27.69329 -26.55482 -25.89688 -25.43219 -24.01836 -23.24949 -22.32151 -20.82442 -20.02205 -19.09970 -18.59977 -18.09042 -17.52799 -17.37947 -16.85711 -16.50529 -16.06221 -15.76068 -15.61372 -15.40399 -15.14421 -14.97088 -14.83377 -14.75849 -14.20807 -14.17479 -13.82002 -13.42676 -13.18936 -13.16249 -12.93107 -12.84208 -12.59075 -12.40764 -12.34227 -12.18021 -12.07867 -11.84529 -11.75591 -11.41149 -11.37738 -11.26854 -11.22527 -11.06321 -10.91465 -10.61982 -10.48043 -9.82899 -8.55934 -7.81842 -5.31996 -0.81452 -0.22330 1.48269 1.49464 1.54255 1.57686 1.66472 2.49343 2.53393 2.94680 3.02293 3.27526 3.32855 3.44103 3.48830 3.66185 3.75596 3.77181 3.80253 4.04937 4.20672 4.25688 4.30758 4.38228 4.43015 4.50824 4.53973 4.61372 4.66949 4.69681 4.76024 4.84341 4.94099 4.98320 5.05304 5.08333 5.14010 5.20046 5.25941 5.30869 5.36699 5.44974 5.49921 5.60177 5.69090 5.86104 6.24082 6.46439 6.82228 7.21592 7.51971 7.92861 8.42572 9.22445 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.004128 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.986794 B = 6781.384857 C = 8302.028126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.130 3.870 3 H 0.077 0.923 4 C -0.109 4.109 5 C -0.051 4.051 6 C 0.095 3.905 7 N -0.598 5.598 8 C 0.579 3.421 9 O -0.546 6.546 10 C -0.145 4.145 11 C -0.047 4.047 12 C 0.045 3.955 13 N -0.260 5.260 14 N -0.274 5.274 15 C 0.036 3.964 16 C -0.114 4.114 17 C 0.176 3.824 18 N -0.607 5.607 19 C -0.256 4.256 20 H 0.066 0.934 21 C -0.049 4.049 22 N -0.937 5.937 23 Si 0.963 3.037 24 H -0.286 1.286 25 H -0.299 1.299 26 H -0.269 1.269 27 C 0.136 3.864 28 C -0.107 4.107 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.188 0.812 37 H 0.224 0.776 38 H 0.200 0.800 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.054 0.946 42 H -0.004 1.004 43 H 0.247 0.753 44 H 0.017 0.983 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.775 -0.244 3.112 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.029 3.971 3 H 0.095 0.905 4 C -0.146 4.146 5 C -0.052 4.052 6 C -0.027 4.027 7 N -0.330 5.330 8 C 0.367 3.633 9 O -0.425 6.425 10 C -0.159 4.159 11 C -0.077 4.077 12 C -0.119 4.119 13 N -0.102 5.102 14 N -0.114 5.114 15 C -0.129 4.129 16 C -0.154 4.154 17 C 0.050 3.950 18 N -0.331 5.331 19 C -0.387 4.387 20 H 0.084 0.916 21 C -0.244 4.244 22 N -0.583 5.583 23 Si 0.792 3.208 24 H -0.213 1.213 25 H -0.226 1.226 26 H -0.194 1.194 27 C 0.010 3.990 28 C -0.146 4.146 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.205 0.795 37 H 0.241 0.759 38 H 0.216 0.784 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.014 0.986 43 H 0.056 0.944 44 H 0.034 0.966 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.973 -0.857 3.854 18.402 hybrid contribution 0.505 1.076 -0.641 1.351 sum -17.468 0.219 3.213 17.763 Atomic orbital electron populations 1.22102 0.92855 1.02610 1.03592 1.22189 0.95664 0.95592 0.83667 0.90455 1.22945 0.93972 1.01056 0.96666 1.20890 0.95437 0.96688 0.92169 1.22690 0.86483 0.96448 0.97069 1.48562 1.27742 1.47627 1.09102 1.17589 0.84104 0.80184 0.81391 1.90706 1.22203 1.46488 1.83108 1.21281 0.97614 1.00483 0.96524 1.22971 0.99626 0.94666 0.90486 1.25067 0.91351 0.92069 1.03428 1.72818 1.11463 1.13912 1.11957 1.73130 1.25365 1.17324 0.95610 1.26177 0.92062 0.91759 1.02883 1.21916 0.95634 0.96621 1.01183 1.20652 0.93267 0.88292 0.92758 1.44225 1.16856 1.07130 1.64848 1.19519 0.87371 1.22783 1.08985 0.91599 1.25813 1.00202 1.01236 0.97131 1.70116 1.30326 1.34924 1.22952 0.85330 0.79508 0.78147 0.77847 1.21251 1.22604 1.19361 1.21161 0.90176 0.90228 0.97410 1.21824 0.96955 0.95754 1.00091 0.91467 0.89867 0.92780 0.88134 0.88838 0.89286 0.91360 0.79514 0.75946 0.78379 0.92035 0.92254 0.92792 0.98647 0.94374 0.96552 0.92830 0.89555 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.64 71.98 0.62 -2.39 16 2 C 0.13 2.80 3.46 45.50 0.16 2.96 16 3 H 0.08 1.72 7.76 -2.39 -0.02 1.70 16 4 C -0.11 -2.09 5.41 31.80 0.17 -1.92 16 5 C -0.05 -1.32 0.53 -51.91 -0.03 -1.35 16 6 C 0.09 2.49 3.06 86.48 0.26 2.75 16 7 N -0.60 -14.85 3.25 -792.52 -2.57 -17.42 16 8 C 0.58 15.32 7.66 86.87 0.67 15.98 16 9 O -0.55 -15.77 14.04 -3.77 -0.05 -15.82 16 10 C -0.14 -3.65 5.92 -19.83 -0.12 -3.77 16 11 C -0.05 -0.92 9.77 22.79 0.22 -0.70 16 12 C 0.05 0.85 11.30 84.74 0.96 1.81 16 13 N -0.26 -7.31 11.48 -57.33 -0.66 -7.96 16 14 N -0.27 -8.85 11.49 -56.53 -0.65 -9.50 16 15 C 0.04 1.02 9.94 85.04 0.85 1.86 16 16 C -0.11 -3.74 4.78 30.46 0.15 -3.60 16 17 C 0.18 7.88 4.98 86.40 0.43 8.31 16 18 N -0.61 -28.28 2.98 -698.60 -2.08 -30.36 16 19 C -0.26 -13.50 9.59 84.03 0.81 -12.70 16 20 H 0.07 3.39 7.85 -2.91 -0.02 3.36 16 21 C -0.05 -2.66 5.08 84.86 0.43 -2.23 16 22 N -0.94 -54.55 10.91 21.65 0.24 -54.31 16 23 Si 0.96 44.27 29.56 68.60 2.03 46.30 16 24 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 25 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 C 0.14 4.98 6.24 86.40 0.54 5.52 16 28 C -0.11 -2.88 4.70 30.46 0.14 -2.74 16 29 H 0.07 1.61 5.88 -2.39 -0.01 1.59 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.10 1.71 8.01 -2.39 -0.02 1.69 16 33 H 0.09 1.54 7.93 -2.39 -0.02 1.52 16 34 H 0.09 2.16 6.21 -2.39 -0.01 2.14 16 35 H 0.07 2.17 4.71 -2.39 -0.01 2.15 16 36 H 0.19 2.62 7.81 -2.91 -0.02 2.60 16 37 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.20 5.67 2.93 -3.24 -0.01 5.66 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.06 1.81 7.49 -2.38 -0.02 1.79 16 41 H 0.05 2.86 5.96 -2.39 -0.01 2.85 16 42 H 0.00 -0.21 6.53 -2.39 -0.02 -0.23 16 43 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 44 H 0.02 0.61 7.47 -2.38 -0.02 0.59 16 45 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 46 H 0.09 1.82 8.10 -2.39 -0.02 1.80 16 47 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -68.81 357.63 3.50 -65.31 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.99 Total: 15.97 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 6.26 Total: 7.82 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -5.73 Total: -119.57 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.05 Total: -15.82 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.81 3.50 -65.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086945297.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.140 kcal (2) G-P(sol) polarization free energy of solvation -68.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds