Wall clock time and date at job start Tue Mar 31 2020 16:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.86809 * 2 1 4 4 C 1.54455 * 110.00455 * 121.08294 * 2 1 3 5 5 C 1.54665 * 102.90234 * 140.99396 * 4 2 1 6 6 C 1.54142 * 102.34356 * 325.37969 * 5 4 2 7 7 N 1.47083 * 109.87967 * 238.99923 * 2 1 3 8 8 C 1.34778 * 125.63228 * 61.43653 * 7 2 1 9 9 O 1.21481 * 119.99685 * 359.95935 * 8 7 2 10 10 C 1.48451 * 120.00173 * 179.97438 * 8 7 2 11 11 C 1.39535 * 120.55134 * 180.02562 * 10 8 7 12 12 C 1.38755 * 118.26488 * 180.02562 * 11 10 8 13 13 N 1.32205 * 119.14846 * 359.97438 * 12 11 10 14 14 C 1.31882 * 121.03368 * 359.97438 * 13 12 11 15 15 N 1.31580 * 121.91722 * 359.72246 * 14 13 12 16 16 C 1.52102 * 110.56250 * 83.27581 * 5 4 2 17 17 C 1.53339 * 109.44712 * 182.93904 * 16 5 4 18 18 N 1.46932 * 108.68959 * 306.70575 * 17 16 5 19 19 C 1.36938 * 120.55265 * 234.36731 * 18 17 16 20 20 H 1.08006 * 119.99726 * 152.41272 * 19 18 17 21 21 C 1.38813 * 120.00308 * 332.41165 * 19 18 17 22 22 N 1.31623 * 119.99863 * 159.35509 * 21 19 18 23 23 Si 1.86797 * 119.99898 * 339.36123 * 21 19 18 24 24 H 1.48499 * 109.47295 * 93.26958 * 23 21 19 25 25 H 1.48501 * 109.46779 * 213.26433 * 23 21 19 26 26 H 1.48496 * 109.47289 * 333.26803 * 23 21 19 27 27 C 1.46938 * 118.89309 * 54.35124 * 18 17 16 28 28 C 1.52112 * 110.67091 * 207.45305 * 5 4 2 29 29 H 1.08999 * 109.47082 * 179.54756 * 1 2 3 30 30 H 1.08995 * 109.47287 * 299.55051 * 1 2 3 31 31 H 1.09006 * 109.47002 * 59.55034 * 1 2 3 32 32 H 1.08998 * 110.73746 * 259.33943 * 4 2 1 33 33 H 1.09004 * 110.73116 * 22.47055 * 4 2 1 34 34 H 1.08995 * 110.37770 * 277.19615 * 6 5 4 35 35 H 1.09001 * 110.37484 * 154.95578 * 6 5 4 36 36 H 1.08005 * 120.86512 * 0.02562 * 11 10 8 37 37 H 1.08001 * 120.42890 * 180.02562 * 12 11 10 38 38 H 1.08004 * 119.03759 * 180.02562 * 14 13 12 39 39 H 1.09002 * 109.47229 * 302.92243 * 16 5 4 40 40 H 1.08996 * 109.48160 * 62.94319 * 16 5 4 41 41 H 1.08999 * 109.60192 * 186.94573 * 17 16 5 42 42 H 1.09001 * 109.60195 * 66.46711 * 17 16 5 43 43 H 0.97000 * 119.99599 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.60005 * 185.88575 * 27 18 17 45 45 H 1.08996 * 109.60154 * 65.39651 * 27 18 17 46 46 H 1.09000 * 109.47631 * 297.10576 * 28 5 4 47 47 H 1.09001 * 109.47366 * 57.12116 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0584 -0.7493 1.2430 5 6 3.2773 -1.5226 0.6878 6 6 2.8199 -1.8770 -0.7409 7 7 2.0301 -0.7124 -1.1856 8 6 1.8046 -0.3598 -2.4667 9 8 1.1360 0.6230 -2.7175 10 6 2.3729 -1.1725 -3.5714 11 6 2.1471 -0.8176 -4.9018 12 6 2.7003 -1.6111 -5.8966 13 7 3.4172 -2.6676 -5.5533 14 6 3.6121 -2.9742 -4.2855 15 7 3.1120 -2.2476 -3.3092 16 6 4.5064 -0.6273 0.6512 17 6 5.6791 -1.3953 0.0296 18 7 5.8475 -2.6634 0.7525 19 6 7.0585 -2.9991 1.2963 20 1 7.1019 -3.6464 2.1598 21 6 8.2305 -2.5076 0.7379 22 7 9.3359 -2.4739 1.4515 23 14 8.2386 -1.8938 -1.0264 24 1 7.9919 -0.4295 -1.0422 25 1 9.5584 -2.1801 -1.6439 26 1 7.1720 -2.5837 -1.7954 27 6 4.6946 -3.5651 0.8823 28 6 3.5277 -2.7845 1.4993 29 1 -0.3633 -1.0276 -0.0081 30 1 -0.3633 0.5068 0.8939 31 1 -0.3633 0.5208 -0.8860 32 1 2.3676 -0.0453 2.0155 33 1 1.3051 -1.4366 1.6283 34 1 2.2005 -2.7737 -0.7296 35 1 3.6830 -2.0208 -1.3910 36 1 1.5570 0.0521 -5.1508 37 1 2.5480 -1.3685 -6.9379 38 1 4.2036 -3.8444 -4.0416 39 1 4.2935 0.2579 0.0520 40 1 4.7667 -0.3256 1.6658 41 1 6.5900 -0.8027 0.1139 42 1 5.4679 -1.5981 -1.0203 43 1 10.1547 -2.1301 1.0613 44 1 4.9565 -4.4028 1.5287 45 1 4.4072 -3.9352 -0.1017 46 1 3.7741 -2.5135 2.5259 47 1 2.6315 -3.4049 1.4923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086949276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:05 Heat of formation + Delta-G solvation = 54.488510 kcal Electronic energy + Delta-G solvation = -30081.224764 eV Core-core repulsion = 26265.308543 eV Total energy + Delta-G solvation = -3815.916221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.50261 -40.39785 -38.59643 -36.31205 -34.27778 -33.17700 -32.34215 -31.67959 -31.11509 -30.49104 -27.52600 -26.26937 -25.46080 -24.61484 -24.07688 -22.89497 -22.22342 -21.02978 -19.79573 -18.56092 -17.99449 -17.46053 -16.74822 -16.29129 -15.81936 -15.69148 -15.32727 -15.24502 -14.72333 -14.29740 -14.18408 -13.95125 -13.82831 -13.76631 -13.53534 -13.09606 -12.95879 -12.64752 -12.28752 -12.11039 -11.94948 -11.87175 -11.70375 -11.29044 -11.14790 -11.01300 -10.89850 -10.80894 -10.53746 -10.47438 -10.38687 -10.08809 -10.01050 -9.82236 -9.62108 -9.41827 -9.28911 -8.65949 -8.60095 -6.94746 -5.94985 -3.29889 0.27499 0.67361 2.60391 2.69719 3.31488 3.47689 3.49799 3.61388 3.69215 3.89155 4.18297 4.52783 4.54475 4.59345 4.66488 4.76068 4.86566 4.97101 5.16649 5.25453 5.26511 5.30414 5.32948 5.39307 5.49363 5.59843 5.71434 5.82103 5.85161 5.92650 5.97914 5.98284 6.06208 6.11214 6.14105 6.20946 6.34497 6.38428 6.45351 6.54305 6.58645 6.67710 6.69247 6.70660 6.96301 7.38281 7.68653 7.95056 7.97423 8.33405 8.95267 9.73011 10.11270 11.21196 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.005436 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.470188 B = 5149.805701 C = 6871.443075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 H 0.077 0.923 4 C -0.121 4.121 5 C -0.061 4.061 6 C 0.107 3.893 7 N -0.585 5.585 8 C 0.580 3.420 9 O -0.534 6.534 10 C 0.136 3.864 11 C -0.173 4.173 12 C 0.148 3.852 13 N -0.507 5.507 14 C 0.297 3.703 15 N -0.485 5.485 16 C -0.118 4.118 17 C 0.128 3.872 18 N -0.603 5.603 19 C -0.257 4.257 20 H 0.085 0.915 21 C 0.024 3.976 22 N -0.909 5.909 23 Si 0.880 3.120 24 H -0.292 1.292 25 H -0.304 1.304 26 H -0.270 1.270 27 C 0.148 3.852 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.159 0.841 37 H 0.176 0.824 38 H 0.204 0.796 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.025 0.975 43 H 0.262 0.738 44 H 0.063 0.937 45 H 0.025 0.975 46 H 0.068 0.932 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.117 2.230 -8.302 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 H 0.095 0.905 4 C -0.159 4.159 5 C -0.062 4.062 6 C -0.015 4.015 7 N -0.316 5.316 8 C 0.366 3.634 9 O -0.411 6.411 10 C -0.012 4.012 11 C -0.196 4.196 12 C -0.019 4.019 13 N -0.222 5.222 14 C 0.009 3.991 15 N -0.202 5.202 16 C -0.157 4.157 17 C 0.003 3.997 18 N -0.327 5.327 19 C -0.385 4.385 20 H 0.103 0.897 21 C -0.175 4.175 22 N -0.552 5.552 23 Si 0.711 3.289 24 H -0.220 1.220 25 H -0.233 1.233 26 H -0.195 1.195 27 C 0.022 3.978 28 C -0.157 4.157 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.177 0.823 37 H 0.193 0.807 38 H 0.220 0.780 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.761 2.005 -8.220 19.673 hybrid contribution -0.243 1.130 -1.232 1.689 sum -18.004 3.134 -9.452 20.575 Atomic orbital electron populations 1.22130 0.94717 1.02217 1.02803 1.21692 0.94339 0.96528 0.84336 0.90482 1.22860 0.97744 0.99430 0.95880 1.21116 0.94391 0.96591 0.94131 1.22870 0.96270 0.86578 0.95766 1.48490 1.50206 1.28765 1.04146 1.17412 0.80762 0.83927 0.81252 1.90763 1.40214 1.26830 1.83254 1.21621 0.93519 0.92491 0.93572 1.22946 1.01192 1.02332 0.93145 1.23355 0.89359 0.88590 1.00608 1.68390 1.14535 1.17412 1.21813 1.25183 0.93427 0.97299 0.83194 1.68702 1.08374 1.05312 1.37772 1.21831 0.95005 0.97027 1.01877 1.21347 0.96582 0.87893 0.93912 1.44318 1.07967 1.15634 1.64780 1.18924 0.81414 1.29622 1.08563 0.89702 1.25261 0.95187 0.99331 0.97684 1.69837 1.00928 1.48697 1.35746 0.86990 0.76142 0.77822 0.87955 1.21965 1.23262 1.19480 1.20970 0.86823 0.92391 0.97640 1.21837 0.99112 0.95063 0.99654 0.92548 0.91564 0.91410 0.89928 0.90444 0.91463 0.86917 0.82319 0.80720 0.77955 0.93114 0.91295 0.91173 0.95724 0.92834 0.91835 0.95699 0.91377 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.11 37.16 0.34 -1.41 16 2 C 0.13 1.65 3.10 -66.85 -0.21 1.45 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.12 -1.41 5.44 -25.09 -0.14 -1.54 16 5 C -0.06 -0.88 0.54 -153.95 -0.08 -0.96 16 6 C 0.11 1.53 3.92 -2.86 -0.01 1.52 16 7 N -0.58 -8.21 3.06 -164.13 -0.50 -8.71 16 8 C 0.58 8.60 7.65 -12.05 -0.09 8.50 16 9 O -0.53 -8.65 15.45 5.38 0.08 -8.57 16 10 C 0.14 1.84 6.75 -82.64 -0.56 1.28 16 11 C -0.17 -1.87 9.72 -38.91 -0.38 -2.25 16 12 C 0.15 1.41 11.31 -17.20 -0.19 1.21 16 13 N -0.51 -5.93 10.42 -14.60 -0.15 -6.08 16 14 C 0.30 3.65 12.27 -92.26 -1.13 2.52 16 15 N -0.49 -6.67 6.81 -11.14 -0.08 -6.75 16 16 C -0.12 -2.03 4.84 -27.01 -0.13 -2.16 16 17 C 0.13 2.73 3.89 -3.63 -0.01 2.71 16 18 N -0.60 -13.64 2.75 -172.12 -0.47 -14.11 16 19 C -0.26 -6.98 10.03 -15.06 -0.15 -7.13 16 20 H 0.09 2.46 8.06 -52.48 -0.42 2.04 16 21 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 22 N -0.91 -27.65 13.97 55.49 0.78 -26.88 16 23 Si 0.88 22.36 24.36 -169.99 -4.14 18.22 16 24 H -0.29 -7.29 6.63 56.52 0.37 -6.92 16 25 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 26 H -0.27 -6.65 6.64 56.52 0.38 -6.27 16 27 C 0.15 2.69 6.25 -3.63 -0.02 2.66 16 28 C -0.12 -1.72 4.85 -27.01 -0.13 -1.85 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.84 6.87 -51.93 -0.36 0.49 16 32 H 0.08 0.91 8.02 -51.93 -0.42 0.49 16 33 H 0.08 0.80 7.72 -51.93 -0.40 0.40 16 34 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 35 H 0.11 1.84 4.01 -51.93 -0.21 1.64 16 36 H 0.16 1.46 7.74 -52.48 -0.41 1.06 16 37 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.20 2.07 8.06 -52.48 -0.42 1.65 16 39 H 0.05 0.84 7.84 -51.93 -0.41 0.43 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.07 1.69 4.46 -51.93 -0.23 1.45 16 42 H 0.03 0.54 5.56 -51.93 -0.29 0.25 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 45 H 0.03 0.44 7.63 -51.93 -0.40 0.04 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -32.39 359.09 -9.00 -41.39 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.93 Total: 0.93 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -3.00 Total: 5.14 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.43 Total: -62.53 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.08 Total: -8.57 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.39 -9.00 -41.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086949276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.876 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds