Wall clock time and date at job start Tue Mar 31 2020 16:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.86809 * 2 1 4 4 C 1.54455 * 110.00455 * 121.08294 * 2 1 3 5 5 C 1.54665 * 102.90234 * 140.99396 * 4 2 1 6 6 C 1.54142 * 102.34356 * 325.37969 * 5 4 2 7 7 N 1.47083 * 109.87967 * 238.99923 * 2 1 3 8 8 C 1.34778 * 125.63228 * 61.43653 * 7 2 1 9 9 O 1.21481 * 119.99685 * 359.95935 * 8 7 2 10 10 C 1.48451 * 120.00173 * 179.97438 * 8 7 2 11 11 C 1.39535 * 120.55134 * 180.02562 * 10 8 7 12 12 C 1.38755 * 118.26488 * 180.02562 * 11 10 8 13 13 N 1.32205 * 119.14846 * 359.97438 * 12 11 10 14 14 C 1.31882 * 121.03368 * 359.97438 * 13 12 11 15 15 N 1.31580 * 121.91722 * 359.72246 * 14 13 12 16 16 C 1.52102 * 110.56250 * 83.27581 * 5 4 2 17 17 C 1.53339 * 109.44712 * 182.93904 * 16 5 4 18 18 N 1.46932 * 108.68959 * 306.70575 * 17 16 5 19 19 C 1.36938 * 120.55265 * 234.36731 * 18 17 16 20 20 H 1.08006 * 119.99726 * 152.41272 * 19 18 17 21 21 C 1.38813 * 120.00308 * 332.41165 * 19 18 17 22 22 N 1.31623 * 119.99863 * 159.35509 * 21 19 18 23 23 Si 1.86797 * 119.99898 * 339.36123 * 21 19 18 24 24 H 1.48499 * 109.47295 * 93.26958 * 23 21 19 25 25 H 1.48501 * 109.46779 * 213.26433 * 23 21 19 26 26 H 1.48496 * 109.47289 * 333.26803 * 23 21 19 27 27 C 1.46938 * 118.89309 * 54.35124 * 18 17 16 28 28 C 1.52112 * 110.67091 * 207.45305 * 5 4 2 29 29 H 1.08999 * 109.47082 * 179.54756 * 1 2 3 30 30 H 1.08995 * 109.47287 * 299.55051 * 1 2 3 31 31 H 1.09006 * 109.47002 * 59.55034 * 1 2 3 32 32 H 1.08998 * 110.73746 * 259.33943 * 4 2 1 33 33 H 1.09004 * 110.73116 * 22.47055 * 4 2 1 34 34 H 1.08995 * 110.37770 * 277.19615 * 6 5 4 35 35 H 1.09001 * 110.37484 * 154.95578 * 6 5 4 36 36 H 1.08005 * 120.86512 * 0.02562 * 11 10 8 37 37 H 1.08001 * 120.42890 * 180.02562 * 12 11 10 38 38 H 1.08004 * 119.03759 * 180.02562 * 14 13 12 39 39 H 1.09002 * 109.47229 * 302.92243 * 16 5 4 40 40 H 1.08996 * 109.48160 * 62.94319 * 16 5 4 41 41 H 1.08999 * 109.60192 * 186.94573 * 17 16 5 42 42 H 1.09001 * 109.60195 * 66.46711 * 17 16 5 43 43 H 0.97000 * 119.99599 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.60005 * 185.88575 * 27 18 17 45 45 H 1.08996 * 109.60154 * 65.39651 * 27 18 17 46 46 H 1.09000 * 109.47631 * 297.10576 * 28 5 4 47 47 H 1.09001 * 109.47366 * 57.12116 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0584 -0.7493 1.2430 5 6 3.2773 -1.5226 0.6878 6 6 2.8199 -1.8770 -0.7409 7 7 2.0301 -0.7124 -1.1856 8 6 1.8046 -0.3598 -2.4667 9 8 1.1360 0.6230 -2.7175 10 6 2.3729 -1.1725 -3.5714 11 6 2.1471 -0.8176 -4.9018 12 6 2.7003 -1.6111 -5.8966 13 7 3.4172 -2.6676 -5.5533 14 6 3.6121 -2.9742 -4.2855 15 7 3.1120 -2.2476 -3.3092 16 6 4.5064 -0.6273 0.6512 17 6 5.6791 -1.3953 0.0296 18 7 5.8475 -2.6634 0.7525 19 6 7.0585 -2.9991 1.2963 20 1 7.1019 -3.6464 2.1598 21 6 8.2305 -2.5076 0.7379 22 7 9.3359 -2.4739 1.4515 23 14 8.2386 -1.8938 -1.0264 24 1 7.9919 -0.4295 -1.0422 25 1 9.5584 -2.1801 -1.6439 26 1 7.1720 -2.5837 -1.7954 27 6 4.6946 -3.5651 0.8823 28 6 3.5277 -2.7845 1.4993 29 1 -0.3633 -1.0276 -0.0081 30 1 -0.3633 0.5068 0.8939 31 1 -0.3633 0.5208 -0.8860 32 1 2.3676 -0.0453 2.0155 33 1 1.3051 -1.4366 1.6283 34 1 2.2005 -2.7737 -0.7296 35 1 3.6830 -2.0208 -1.3910 36 1 1.5570 0.0521 -5.1508 37 1 2.5480 -1.3685 -6.9379 38 1 4.2036 -3.8444 -4.0416 39 1 4.2935 0.2579 0.0520 40 1 4.7667 -0.3256 1.6658 41 1 6.5900 -0.8027 0.1139 42 1 5.4679 -1.5981 -1.0203 43 1 10.1547 -2.1301 1.0613 44 1 4.9565 -4.4028 1.5287 45 1 4.4072 -3.9352 -0.1017 46 1 3.7741 -2.5135 2.5259 47 1 2.6315 -3.4049 1.4923 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086949276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:03 Heat of formation + Delta-G solvation = 34.702592 kcal Electronic energy + Delta-G solvation = -30082.082746 eV Core-core repulsion = 26265.308543 eV Total energy + Delta-G solvation = -3816.774203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.44772 -41.46294 -39.81252 -37.74325 -35.20623 -34.80417 -33.22071 -33.06162 -32.51538 -31.98136 -28.94464 -27.28482 -26.47953 -25.72530 -25.45092 -24.39737 -23.42372 -22.43940 -20.79375 -19.94914 -18.96077 -18.72060 -18.20867 -17.43720 -17.25994 -16.76004 -16.56327 -16.22389 -15.92356 -15.74615 -15.34718 -15.26941 -15.21472 -14.89495 -14.74406 -14.34745 -14.24537 -14.06728 -13.70873 -13.57880 -13.24636 -13.11361 -12.93103 -12.59505 -12.34376 -12.18162 -12.15633 -12.03927 -12.02477 -11.94579 -11.60899 -11.49110 -11.44406 -11.14130 -11.04799 -10.87184 -10.64113 -10.25400 -9.72537 -8.86274 -8.15729 -5.44511 -0.65179 -0.14148 1.26040 1.36992 1.45338 1.57285 1.70268 2.40532 2.70715 2.74634 3.07140 3.11696 3.30344 3.38282 3.49839 3.63583 3.73347 3.80359 3.98930 4.10284 4.13761 4.27560 4.34509 4.44807 4.44836 4.48785 4.54862 4.62379 4.69942 4.77577 4.79864 4.82870 4.91271 5.03372 5.04741 5.09637 5.18429 5.19802 5.23169 5.26543 5.30427 5.38236 5.44393 5.58795 5.72205 5.90595 6.15706 6.30404 6.75715 6.94088 6.95525 7.66464 8.07703 9.04485 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.005436 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.470188 B = 5149.805701 C = 6871.443075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.128 3.872 3 H 0.068 0.932 4 C -0.107 4.107 5 C -0.061 4.061 6 C 0.114 3.886 7 N -0.587 5.587 8 C 0.575 3.425 9 O -0.555 6.555 10 C 0.111 3.889 11 C -0.168 4.168 12 C 0.158 3.842 13 N -0.518 5.518 14 C 0.286 3.714 15 N -0.503 5.503 16 C -0.108 4.108 17 C 0.128 3.872 18 N -0.614 5.614 19 C -0.237 4.237 20 H 0.058 0.942 21 C -0.032 4.032 22 N -0.957 5.957 23 Si 0.937 3.063 24 H -0.289 1.289 25 H -0.314 1.314 26 H -0.258 1.258 27 C 0.141 3.859 28 C -0.105 4.105 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.173 0.827 37 H 0.218 0.782 38 H 0.216 0.784 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.025 0.975 43 H 0.259 0.741 44 H 0.057 0.943 45 H 0.038 0.962 46 H 0.062 0.938 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.043 2.331 -9.407 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.026 3.974 3 H 0.086 0.914 4 C -0.145 4.145 5 C -0.062 4.062 6 C -0.008 4.008 7 N -0.317 5.317 8 C 0.362 3.638 9 O -0.434 6.434 10 C -0.036 4.036 11 C -0.191 4.191 12 C -0.009 4.009 13 N -0.232 5.232 14 C -0.002 4.002 15 N -0.220 5.220 16 C -0.147 4.147 17 C 0.003 3.997 18 N -0.339 5.339 19 C -0.367 4.367 20 H 0.075 0.925 21 C -0.227 4.227 22 N -0.604 5.604 23 Si 0.768 3.232 24 H -0.217 1.217 25 H -0.243 1.243 26 H -0.182 1.182 27 C 0.017 3.983 28 C -0.144 4.144 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.191 0.809 37 H 0.234 0.766 38 H 0.232 0.768 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.747 2.099 -9.322 22.841 hybrid contribution 0.613 1.074 -0.894 1.526 sum -20.134 3.173 -10.216 22.800 Atomic orbital electron populations 1.22048 0.93332 1.02585 1.02959 1.21844 0.95437 0.96079 0.84081 0.91388 1.22813 0.96586 0.99540 0.95555 1.21044 0.94162 0.96256 0.94730 1.22731 0.95883 0.87176 0.94961 1.48572 1.49963 1.28725 1.04456 1.17679 0.80516 0.83832 0.81775 1.90740 1.41271 1.27761 1.83632 1.21651 0.94664 0.93033 0.94266 1.23187 1.00798 1.02711 0.92354 1.24040 0.87503 0.87142 1.02194 1.68463 1.15067 1.18280 1.21433 1.25471 0.93637 0.97643 0.83423 1.68645 1.09068 1.05805 1.38506 1.21677 0.94757 0.97269 1.00991 1.21282 0.96901 0.87352 0.94142 1.44439 1.07680 1.17114 1.64662 1.18913 0.83255 1.27361 1.07130 0.92459 1.25793 0.95103 1.01002 1.00775 1.69955 1.01634 1.51590 1.37233 0.86050 0.75674 0.77529 0.83945 1.21719 1.24303 1.18219 1.21196 0.86438 0.92140 0.98558 1.21716 0.98799 0.95136 0.98785 0.91969 0.89379 0.93309 0.88957 0.88009 0.90190 0.88882 0.80902 0.76593 0.76810 0.92548 0.91949 0.94339 0.95675 0.93193 0.92406 0.94394 0.91912 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.11 71.98 0.66 -2.20 16 2 C 0.13 2.83 3.10 45.37 0.14 2.97 16 3 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 4 C -0.11 -2.09 5.44 31.66 0.17 -1.92 16 5 C -0.06 -1.58 0.54 -51.82 -0.03 -1.61 16 6 C 0.11 2.99 3.92 86.56 0.34 3.33 16 7 N -0.59 -15.30 3.06 -791.50 -2.42 -17.72 16 8 C 0.58 16.30 7.65 86.97 0.67 16.97 16 9 O -0.56 -17.45 15.45 -3.66 -0.06 -17.51 16 10 C 0.11 2.84 6.75 41.99 0.28 3.12 16 11 C -0.17 -3.27 9.72 22.71 0.22 -3.05 16 12 C 0.16 2.57 11.31 84.76 0.96 3.53 16 13 N -0.52 -11.01 10.42 -200.09 -2.09 -13.10 16 14 C 0.29 6.62 12.27 180.92 2.22 8.84 16 15 N -0.50 -13.18 6.81 -189.15 -1.29 -14.46 16 16 C -0.11 -3.57 4.84 30.41 0.15 -3.42 16 17 C 0.13 5.39 3.89 86.41 0.34 5.73 16 18 N -0.61 -27.54 2.75 -698.47 -1.92 -29.47 16 19 C -0.24 -13.10 10.03 84.03 0.84 -12.25 16 20 H 0.06 3.44 8.06 -2.91 -0.02 3.41 16 21 C -0.03 -1.88 5.23 84.86 0.44 -1.44 16 22 N -0.96 -60.27 13.97 21.65 0.30 -59.96 16 23 Si 0.94 47.41 24.36 68.60 1.67 49.08 16 24 H -0.29 -14.34 6.63 99.48 0.66 -13.68 16 25 H -0.31 -16.21 7.11 99.48 0.71 -15.50 16 26 H -0.26 -12.34 6.64 99.48 0.66 -11.68 16 27 C 0.14 4.90 6.25 86.41 0.54 5.44 16 28 C -0.11 -2.77 4.85 30.42 0.15 -2.62 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.12 6.87 -2.38 -0.02 1.11 16 32 H 0.09 1.68 8.02 -2.39 -0.02 1.66 16 33 H 0.10 1.56 7.72 -2.39 -0.02 1.55 16 34 H 0.08 1.90 7.97 -2.39 -0.02 1.88 16 35 H 0.09 2.89 4.01 -2.39 -0.01 2.88 16 36 H 0.17 2.80 7.74 -2.91 -0.02 2.78 16 37 H 0.22 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.22 4.13 8.06 -2.91 -0.02 4.10 16 39 H 0.06 1.79 7.84 -2.39 -0.02 1.78 16 40 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.04 1.86 4.46 -2.39 -0.01 1.85 16 42 H 0.03 1.07 5.56 -2.39 -0.01 1.06 16 43 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 44 H 0.06 2.05 7.93 -2.39 -0.02 2.03 16 45 H 0.04 1.25 7.63 -2.39 -0.02 1.23 16 46 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.09 1.85 8.10 -2.39 -0.02 1.84 16 Total: -1.00 -72.44 359.09 3.17 -69.27 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.88 Total: 12.45 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 8.08 Total: 21.41 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -7.41 Total: -134.71 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.06 Total: -17.51 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.67 Total: 49.08 kcal Total: -72.44 3.17 -69.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086949276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.977 kcal (2) G-P(sol) polarization free energy of solvation -72.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds