Wall clock time and date at job start Tue Mar 31 2020 17:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64104 * 2 1 4 4 C 1.54327 * 110.72340 * 236.85492 * 2 1 3 5 5 N 1.47025 * 107.27105 * 219.44464 * 4 2 1 6 6 C 1.36936 * 125.64786 * 178.97356 * 5 4 2 7 7 H 1.07994 * 120.00155 * 179.97438 * 6 5 4 8 8 C 1.38817 * 119.99675 * 359.97438 * 6 5 4 9 9 N 1.31620 * 120.00327 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99859 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46869 * 59.99891 * 10 8 6 12 12 H 1.48493 * 109.47363 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47265 * 300.00405 * 10 8 6 14 14 C 1.47421 * 108.70178 * 358.93715 * 5 4 2 15 15 C 1.54904 * 104.83620 * 24.13268 * 14 5 4 16 16 H 1.08999 * 111.00765 * 81.06058 * 15 14 5 17 17 C 1.53004 * 111.00762 * 204.91620 * 15 14 5 18 18 N 1.46502 * 109.46791 * 287.19310 * 17 15 14 19 19 C 1.34776 * 119.99815 * 179.97438 * 18 17 15 20 20 O 1.21276 * 120.00334 * 0.02562 * 19 18 17 21 21 C 1.50706 * 119.99880 * 179.97438 * 19 18 17 22 22 H 1.09002 * 109.46638 * 59.99790 * 21 19 18 23 23 C 1.52994 * 109.47182 * 180.02562 * 21 19 18 24 24 C 1.52997 * 109.47044 * 179.97438 * 23 21 19 25 25 C 1.52995 * 109.47388 * 299.99639 * 24 23 21 26 26 C 1.53006 * 109.46956 * 60.00028 * 25 24 23 27 27 C 1.52997 * 109.47050 * 300.00179 * 26 25 24 28 28 F 1.39893 * 109.47225 * 299.99861 * 27 26 25 29 29 F 1.39900 * 109.46952 * 179.97438 * 27 26 25 30 30 H 1.09002 * 109.47153 * 181.69040 * 1 2 3 31 31 H 1.09001 * 109.46832 * 61.69231 * 1 2 3 32 32 H 1.09004 * 109.47261 * 301.69213 * 1 2 3 33 33 H 1.08999 * 109.87685 * 338.86158 * 4 2 1 34 34 H 1.08998 * 109.88102 * 99.87410 * 4 2 1 35 35 H 0.96997 * 119.99926 * 180.02562 * 9 8 6 36 36 H 1.09007 * 110.36440 * 142.96663 * 14 5 4 37 37 H 1.08996 * 110.37385 * 265.17849 * 14 5 4 38 38 H 1.08998 * 109.47117 * 47.19020 * 17 15 14 39 39 H 1.08996 * 109.47296 * 167.19164 * 17 15 14 40 40 H 0.97003 * 120.00184 * 359.97438 * 18 17 15 41 41 H 1.09007 * 109.47227 * 300.00139 * 23 21 19 42 42 H 1.09005 * 109.47100 * 60.00031 * 23 21 19 43 43 H 1.08996 * 109.47309 * 60.00076 * 24 23 21 44 44 H 1.09007 * 109.46864 * 179.97438 * 24 23 21 45 45 H 1.08995 * 109.47306 * 179.97438 * 25 24 23 46 46 H 1.08996 * 109.47252 * 300.00471 * 25 24 23 47 47 H 1.09005 * 109.46872 * 60.00004 * 26 25 24 48 48 H 1.08998 * 109.47303 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7892 -1.2086 5 7 3.2446 -1.5495 -0.7415 6 6 4.0044 -2.3945 -1.5056 7 1 4.8468 -2.9086 -1.0671 8 6 3.6917 -2.5901 -2.8439 9 7 2.6653 -1.9631 -3.3784 10 14 4.7286 -3.7422 -3.8864 11 1 4.6873 -5.1080 -3.3049 12 1 4.1910 -3.7764 -5.2702 13 1 6.1321 -3.2577 -3.9129 14 6 3.4633 -1.2508 0.6855 15 6 2.0790 -0.7974 1.2125 16 1 1.4452 -1.6559 1.4348 17 6 2.2277 0.1041 2.4398 18 7 2.6328 -0.7038 3.5929 19 6 2.8258 -0.1183 4.7914 20 8 2.6638 1.0771 4.9155 21 6 3.2420 -0.9495 5.9777 22 1 4.1946 -1.4347 5.7650 23 6 3.3908 -0.0481 7.2049 24 6 3.8126 -0.8920 8.4093 25 6 2.7483 -1.9561 8.6844 26 6 2.5994 -2.8576 7.4571 27 6 2.1776 -2.0137 6.2526 28 9 0.9549 -1.3909 6.5249 29 9 2.0420 -2.8379 5.1304 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3633 0.4873 -0.9048 32 1 -0.3634 0.5399 0.8744 33 1 1.3130 -1.4732 -1.5799 34 1 2.3716 -0.0992 -1.9989 35 1 2.4467 -2.1002 -4.3135 36 1 3.7960 -2.1446 1.2135 37 1 4.1946 -0.4504 0.7979 38 1 2.9853 0.8628 2.2436 39 1 1.2748 0.5886 2.6524 40 1 2.7620 -1.6601 3.4937 41 1 4.1488 0.7104 7.0088 42 1 2.4379 0.4368 7.4173 43 1 4.7653 -1.3772 8.1973 44 1 3.9191 -0.2496 9.2836 45 1 3.0491 -2.5576 9.5422 46 1 1.7957 -1.4709 8.8964 47 1 3.5522 -3.3428 7.2450 48 1 1.8409 -3.6154 7.6528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092854202.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:46 Heat of formation + Delta-G solvation = -137.651819 kcal Electronic energy + Delta-G solvation = -29873.130553 eV Core-core repulsion = 25598.193316 eV Total energy + Delta-G solvation = -4274.937238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -49.32685 -47.27759 -40.00357 -38.19927 -37.42645 -34.67567 -32.95378 -31.83305 -30.71707 -30.52800 -29.08956 -26.02537 -25.28108 -23.99103 -23.15931 -22.57637 -20.89700 -20.34139 -19.96922 -19.22907 -17.88686 -17.51022 -16.93568 -16.77340 -16.35302 -16.06492 -15.22201 -14.82032 -14.57184 -14.51251 -14.28698 -14.07418 -13.81456 -13.60865 -13.56607 -13.37245 -13.22715 -12.91060 -12.87481 -12.54403 -12.45952 -12.11282 -11.82102 -11.73746 -11.62994 -11.37822 -11.29517 -11.18228 -11.12101 -10.79860 -10.76552 -10.70650 -10.18040 -10.02011 -9.97602 -9.87693 -9.66032 -9.51280 -8.95667 -8.58474 -6.81412 -5.69551 -3.03075 2.41496 3.05119 3.39542 3.41018 3.45107 3.46585 3.70593 3.82979 4.02581 4.46111 4.50276 4.53144 4.57043 4.74317 4.77931 4.89309 5.12841 5.15925 5.21183 5.25080 5.35303 5.37186 5.48621 5.54765 5.55811 5.59031 5.64887 5.76158 5.78759 5.89179 5.94619 6.05262 6.12725 6.21921 6.31336 6.44838 6.50907 6.59517 6.65297 6.78408 6.96980 7.50209 7.57993 7.66499 7.85529 8.15427 8.27798 9.23693 9.84037 10.50591 11.41985 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.018515 B = 0.002834 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.939166 B = 9876.318177 C =10519.309301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.067 0.933 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.922 5.922 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.142 3.858 15 C -0.113 4.113 16 H 0.081 0.919 17 C 0.132 3.868 18 N -0.718 5.718 19 C 0.514 3.486 20 O -0.533 6.533 21 C -0.150 4.150 22 H 0.125 0.875 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.157 4.157 27 C 0.298 3.702 28 F -0.191 7.191 29 F -0.194 7.194 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.252 0.748 36 H 0.035 0.965 37 H 0.019 0.981 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.405 0.595 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.670 0.402 24.457 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.358 4.358 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.016 3.984 15 C -0.132 4.132 16 H 0.099 0.901 17 C 0.008 3.992 18 N -0.371 5.371 19 C 0.298 3.702 20 O -0.410 6.410 21 C -0.172 4.172 22 H 0.143 0.857 23 C -0.137 4.137 24 C -0.162 4.162 25 C -0.159 4.159 26 C -0.195 4.195 27 C 0.262 3.738 28 F -0.172 7.172 29 F -0.175 7.175 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.036 0.964 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.242 0.758 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.116 0.884 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.825 1.179 24.244 24.287 hybrid contribution 0.465 -1.183 -0.929 1.574 sum -0.361 -0.004 23.316 23.318 Atomic orbital electron populations 1.21692 0.95311 1.01488 1.00683 1.22439 0.95176 0.99076 0.96316 0.91426 1.21213 0.89076 0.93097 0.90691 1.44448 1.32587 1.51567 1.04596 1.19007 1.07603 1.17877 0.91269 0.90565 1.24801 0.98424 1.00333 0.96889 1.69953 1.28742 1.45497 1.12717 0.86201 0.79479 0.80503 0.79578 1.21191 1.21609 1.21213 1.21576 0.93000 0.97016 0.86842 1.22681 0.99448 0.98105 0.93011 0.90094 1.21435 1.00183 0.93723 0.83818 1.46251 1.68888 1.12773 1.09139 1.20094 0.77895 0.88376 0.83844 1.90699 1.50890 1.14882 1.84521 1.22474 1.00329 0.97235 0.97175 0.85680 1.21374 1.04303 0.97079 0.90989 1.21657 0.98708 0.97539 0.98334 1.21561 1.00600 0.97163 0.96595 1.22548 1.04624 0.98771 0.93516 1.20912 0.81661 0.86591 0.84667 1.93032 1.46736 1.83510 1.93914 1.93000 1.96297 1.73625 1.54591 0.92768 0.92680 0.93695 0.93318 0.94035 0.93717 0.94677 0.96377 0.91257 0.91574 0.75836 0.89602 0.90062 0.91226 0.90533 0.90262 0.90701 0.88381 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 9.13 37.16 0.34 -1.83 16 2 C -0.11 -2.05 3.01 -88.78 -0.27 -2.32 16 3 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 4 C 0.18 4.47 4.97 -3.06 -0.02 4.45 16 5 N -0.61 -15.53 3.39 -170.08 -0.58 -16.10 16 6 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 7 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.20 10.31 55.49 0.57 -26.63 16 10 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.14 2.91 6.65 -2.53 -0.02 2.89 16 15 C -0.11 -1.95 2.50 -88.47 -0.22 -2.17 16 16 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 17 C 0.13 2.02 5.14 -4.04 -0.02 2.00 16 18 N -0.72 -9.97 5.19 -60.29 -0.31 -10.28 16 19 C 0.51 7.09 6.89 -10.98 -0.08 7.01 16 20 O -0.53 -9.05 15.98 5.56 0.09 -8.96 16 21 C -0.15 -1.46 2.23 -91.77 -0.21 -1.66 16 22 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 23 C -0.10 -0.85 4.37 -26.74 -0.12 -0.97 16 24 C -0.12 -0.69 5.92 -26.74 -0.16 -0.85 16 25 C -0.12 -0.66 5.80 -26.73 -0.16 -0.81 16 26 C -0.16 -1.00 5.45 -26.73 -0.15 -1.14 16 27 C 0.30 2.91 1.63 -26.73 -0.04 2.86 16 28 F -0.19 -2.31 15.73 2.25 0.04 -2.28 16 29 F -0.19 -2.19 14.83 2.25 0.03 -2.16 16 30 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 1.30 7.06 -51.93 -0.37 0.94 16 34 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 35 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 38 H 0.07 1.11 7.96 -51.93 -0.41 0.70 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.41 5.22 6.64 -40.82 -0.27 4.95 16 41 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 42 H 0.08 0.82 7.76 -51.93 -0.40 0.42 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.47 7.80 -51.93 -0.41 0.06 16 47 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -32.77 378.27 -8.95 -41.72 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.11 Total: 1.29 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.35 Total: 0.55 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.32 Total: -53.02 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.07 Total: -4.43 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.77 -8.95 -41.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092854202.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.930 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds