Wall clock time and date at job start Tue Mar 31 2020 17:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64104 * 2 1 4 4 C 1.54327 * 110.72340 * 236.85492 * 2 1 3 5 5 N 1.47025 * 107.27105 * 219.44464 * 4 2 1 6 6 C 1.36936 * 125.64786 * 178.97356 * 5 4 2 7 7 H 1.07994 * 120.00155 * 179.97438 * 6 5 4 8 8 C 1.38817 * 119.99675 * 359.97438 * 6 5 4 9 9 N 1.31620 * 120.00327 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99859 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46869 * 59.99891 * 10 8 6 12 12 H 1.48493 * 109.47363 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47265 * 300.00405 * 10 8 6 14 14 C 1.47421 * 108.70178 * 358.93715 * 5 4 2 15 15 C 1.54904 * 104.83620 * 24.13268 * 14 5 4 16 16 H 1.08999 * 111.00765 * 81.06058 * 15 14 5 17 17 C 1.53004 * 111.00762 * 204.91620 * 15 14 5 18 18 N 1.46502 * 109.46791 * 287.19310 * 17 15 14 19 19 C 1.34776 * 119.99815 * 179.97438 * 18 17 15 20 20 O 1.21276 * 120.00334 * 0.02562 * 19 18 17 21 21 C 1.50706 * 119.99880 * 179.97438 * 19 18 17 22 22 H 1.09002 * 109.46638 * 59.99790 * 21 19 18 23 23 C 1.52994 * 109.47182 * 180.02562 * 21 19 18 24 24 C 1.52997 * 109.47044 * 179.97438 * 23 21 19 25 25 C 1.52995 * 109.47388 * 299.99639 * 24 23 21 26 26 C 1.53006 * 109.46956 * 60.00028 * 25 24 23 27 27 C 1.52997 * 109.47050 * 300.00179 * 26 25 24 28 28 F 1.39893 * 109.47225 * 299.99861 * 27 26 25 29 29 F 1.39900 * 109.46952 * 179.97438 * 27 26 25 30 30 H 1.09002 * 109.47153 * 181.69040 * 1 2 3 31 31 H 1.09001 * 109.46832 * 61.69231 * 1 2 3 32 32 H 1.09004 * 109.47261 * 301.69213 * 1 2 3 33 33 H 1.08999 * 109.87685 * 338.86158 * 4 2 1 34 34 H 1.08998 * 109.88102 * 99.87410 * 4 2 1 35 35 H 0.96997 * 119.99926 * 180.02562 * 9 8 6 36 36 H 1.09007 * 110.36440 * 142.96663 * 14 5 4 37 37 H 1.08996 * 110.37385 * 265.17849 * 14 5 4 38 38 H 1.08998 * 109.47117 * 47.19020 * 17 15 14 39 39 H 1.08996 * 109.47296 * 167.19164 * 17 15 14 40 40 H 0.97003 * 120.00184 * 359.97438 * 18 17 15 41 41 H 1.09007 * 109.47227 * 300.00139 * 23 21 19 42 42 H 1.09005 * 109.47100 * 60.00031 * 23 21 19 43 43 H 1.08996 * 109.47309 * 60.00076 * 24 23 21 44 44 H 1.09007 * 109.46864 * 179.97438 * 24 23 21 45 45 H 1.08995 * 109.47306 * 179.97438 * 25 24 23 46 46 H 1.08996 * 109.47252 * 300.00471 * 25 24 23 47 47 H 1.09005 * 109.46872 * 60.00004 * 26 25 24 48 48 H 1.08998 * 109.47303 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7892 -1.2086 5 7 3.2446 -1.5495 -0.7415 6 6 4.0044 -2.3945 -1.5056 7 1 4.8468 -2.9086 -1.0671 8 6 3.6917 -2.5901 -2.8439 9 7 2.6653 -1.9631 -3.3784 10 14 4.7286 -3.7422 -3.8864 11 1 4.6873 -5.1080 -3.3049 12 1 4.1910 -3.7764 -5.2702 13 1 6.1321 -3.2577 -3.9129 14 6 3.4633 -1.2508 0.6855 15 6 2.0790 -0.7974 1.2125 16 1 1.4452 -1.6559 1.4348 17 6 2.2277 0.1041 2.4398 18 7 2.6328 -0.7038 3.5929 19 6 2.8258 -0.1183 4.7914 20 8 2.6638 1.0771 4.9155 21 6 3.2420 -0.9495 5.9777 22 1 4.1946 -1.4347 5.7650 23 6 3.3908 -0.0481 7.2049 24 6 3.8126 -0.8920 8.4093 25 6 2.7483 -1.9561 8.6844 26 6 2.5994 -2.8576 7.4571 27 6 2.1776 -2.0137 6.2526 28 9 0.9549 -1.3909 6.5249 29 9 2.0420 -2.8379 5.1304 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3633 0.4873 -0.9048 32 1 -0.3634 0.5399 0.8744 33 1 1.3130 -1.4732 -1.5799 34 1 2.3716 -0.0992 -1.9989 35 1 2.4467 -2.1002 -4.3135 36 1 3.7960 -2.1446 1.2135 37 1 4.1946 -0.4504 0.7979 38 1 2.9853 0.8628 2.2436 39 1 1.2748 0.5886 2.6524 40 1 2.7620 -1.6601 3.4937 41 1 4.1488 0.7104 7.0088 42 1 2.4379 0.4368 7.4173 43 1 4.7653 -1.3772 8.1973 44 1 3.9191 -0.2496 9.2836 45 1 3.0491 -2.5576 9.5422 46 1 1.7957 -1.4709 8.8964 47 1 3.5522 -3.3428 7.2450 48 1 1.8409 -3.6154 7.6528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092854202.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:44 Heat of formation + Delta-G solvation = -157.275558 kcal Electronic energy + Delta-G solvation = -29873.981503 eV Core-core repulsion = 25598.193316 eV Total energy + Delta-G solvation = -4275.788187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -50.13353 -48.10654 -41.09954 -39.70605 -38.19911 -36.10251 -34.71329 -32.60491 -32.54305 -31.24162 -30.43739 -27.86947 -26.77834 -25.12928 -23.98339 -23.77501 -21.96127 -21.65553 -21.03678 -20.71428 -18.99865 -18.62274 -18.29953 -17.71771 -17.34740 -17.23159 -16.69441 -16.23033 -15.78198 -15.62768 -15.33916 -15.21925 -14.90237 -14.67898 -14.56162 -14.41451 -14.35646 -14.17584 -14.01547 -13.63281 -13.45755 -13.35177 -13.17252 -13.12189 -12.87634 -12.72266 -12.64637 -12.44664 -12.32895 -11.98503 -11.84901 -11.82318 -11.61311 -11.57797 -11.49520 -11.40497 -11.28851 -10.81871 -10.69552 -10.16141 -8.90253 -7.84511 -5.20557 1.37532 1.45440 1.48986 1.55242 2.02211 2.49487 2.66487 3.03397 3.12463 3.31208 3.33044 3.57932 3.69482 3.84796 3.88880 3.89883 3.93094 4.01362 4.15255 4.24544 4.30979 4.33374 4.46345 4.56218 4.61548 4.70301 4.72795 4.75870 4.81784 4.89438 4.93526 5.03496 5.04916 5.07881 5.11205 5.22263 5.25039 5.29645 5.33209 5.43052 5.45152 5.46439 5.69877 5.80197 6.19709 6.40166 7.06676 7.10103 7.77556 8.42611 9.25612 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.018515 B = 0.002834 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.939166 B = 9876.318177 C =10519.309301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 H 0.076 0.924 4 C 0.193 3.807 5 N -0.629 5.629 6 C -0.245 4.245 7 H 0.084 0.916 8 C -0.067 4.067 9 N -0.951 5.951 10 Si 0.980 3.020 11 H -0.275 1.275 12 H -0.295 1.295 13 H -0.277 1.277 14 C 0.139 3.861 15 C -0.091 4.091 16 H 0.083 0.917 17 C 0.143 3.857 18 N -0.717 5.717 19 C 0.508 3.492 20 O -0.569 6.569 21 C -0.145 4.145 22 H 0.154 0.846 23 C -0.098 4.098 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.151 4.151 27 C 0.289 3.711 28 F -0.209 7.209 29 F -0.205 7.205 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.016 0.984 34 H 0.001 0.999 35 H 0.246 0.754 36 H 0.046 0.954 37 H 0.020 0.980 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.411 0.589 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.061 0.939 47 H 0.121 0.879 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 -0.716 26.940 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.094 0.906 4 C 0.068 3.932 5 N -0.355 5.355 6 C -0.374 4.374 7 H 0.101 0.899 8 C -0.260 4.260 9 N -0.600 5.600 10 Si 0.808 3.192 11 H -0.201 1.201 12 H -0.222 1.222 13 H -0.204 1.204 14 C 0.014 3.986 15 C -0.111 4.111 16 H 0.102 0.898 17 C 0.019 3.981 18 N -0.369 5.369 19 C 0.294 3.706 20 O -0.448 6.448 21 C -0.166 4.166 22 H 0.172 0.828 23 C -0.136 4.136 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.189 4.189 27 C 0.252 3.748 28 F -0.191 7.191 29 F -0.186 7.186 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.034 0.966 34 H 0.020 0.980 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.038 0.962 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.249 0.751 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.122 0.878 46 H 0.080 0.920 47 H 0.139 0.861 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.230 0.044 26.771 26.772 hybrid contribution 0.154 -0.796 -1.695 1.879 sum 0.384 -0.752 25.076 25.090 Atomic orbital electron populations 1.21638 0.93115 1.01662 1.02088 1.22322 0.96922 0.98627 0.94204 0.90573 1.20965 0.88108 0.91965 0.92188 1.44776 1.32659 1.51346 1.06680 1.19446 1.07973 1.18007 0.91941 0.89858 1.25679 0.99844 1.02260 0.98233 1.70189 1.30382 1.46999 1.12461 0.85136 0.77970 0.78793 0.77336 1.20053 1.22164 1.20352 1.21736 0.94861 0.97514 0.84497 1.22465 0.97255 0.98177 0.93198 0.89846 1.21184 1.00326 0.93133 0.83465 1.46234 1.68805 1.12944 1.08955 1.20831 0.76839 0.88344 0.84546 1.90681 1.52401 1.16650 1.85118 1.22577 1.01490 0.96988 0.95593 0.82841 1.21379 1.03055 0.97281 0.91876 1.21654 0.99456 0.97358 0.97092 1.21588 1.00008 0.97169 0.96975 1.22620 1.05822 0.98423 0.92033 1.21390 0.80785 0.86902 0.85699 1.92997 1.48037 1.83985 1.94041 1.92976 1.96309 1.73846 1.55455 0.93313 0.92601 0.90856 0.96594 0.98036 0.94443 0.93563 0.96218 0.91823 0.91140 0.75119 0.90168 0.92320 0.89307 0.89472 0.87813 0.92015 0.86107 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.13 71.98 0.66 -3.35 16 2 C -0.10 -3.74 3.01 -9.60 -0.03 -3.77 16 3 H 0.08 2.71 8.04 -2.39 -0.02 2.69 16 4 C 0.19 9.69 4.97 86.73 0.43 10.12 16 5 N -0.63 -32.73 3.39 -692.00 -2.35 -35.08 16 6 C -0.24 -13.86 10.28 84.03 0.86 -13.00 16 7 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 8 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 9 N -0.95 -58.10 10.31 21.65 0.22 -57.88 16 10 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 C 0.14 5.62 6.65 86.85 0.58 6.20 16 15 C -0.09 -3.07 2.50 -9.40 -0.02 -3.10 16 16 H 0.08 2.81 8.04 -2.39 -0.02 2.79 16 17 C 0.14 4.20 5.14 86.38 0.44 4.65 16 18 N -0.72 -18.92 5.19 -463.06 -2.40 -21.32 16 19 C 0.51 13.47 6.89 87.66 0.60 14.08 16 20 O -0.57 -19.13 15.98 -3.02 -0.05 -19.18 16 21 C -0.14 -2.54 2.23 -11.54 -0.03 -2.57 16 22 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 23 C -0.10 -1.52 4.37 30.59 0.13 -1.39 16 24 C -0.12 -0.95 5.92 30.59 0.18 -0.77 16 25 C -0.12 -0.93 5.80 30.59 0.18 -0.75 16 26 C -0.15 -1.47 5.45 30.60 0.17 -1.30 16 27 C 0.29 5.08 1.63 30.59 0.05 5.13 16 28 F -0.21 -4.93 15.73 44.97 0.71 -4.22 16 29 F -0.20 -4.25 14.83 44.97 0.67 -3.58 16 30 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.02 0.89 7.06 -2.39 -0.02 0.87 16 34 H 0.00 0.08 7.50 -2.39 -0.02 0.06 16 35 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.02 0.81 7.91 -2.39 -0.02 0.79 16 38 H 0.06 1.98 7.96 -2.39 -0.02 1.96 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.41 9.89 6.64 -92.71 -0.62 9.28 16 41 H 0.08 1.33 8.10 -2.38 -0.02 1.31 16 42 H 0.06 1.17 7.76 -2.38 -0.02 1.15 16 43 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 45 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.06 0.66 7.80 -2.39 -0.02 0.64 16 47 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -73.67 378.27 3.83 -69.84 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.33 Total: 16.54 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 4.67 Total: 6.77 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -4.53 Total: -114.27 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.05 Total: -19.18 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 1.37 Total: -7.81 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -73.67 3.83 -69.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092854202.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.433 kcal (2) G-P(sol) polarization free energy of solvation -73.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds