Wall clock time and date at job start Tue Mar 31 2020 17:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.77928 * 2 1 4 4 C 1.54332 * 110.84822 * 236.92892 * 2 1 3 5 5 N 1.47025 * 107.26803 * 219.66964 * 4 2 1 6 6 C 1.36929 * 125.65197 * 178.84694 * 5 4 2 7 7 H 1.08000 * 120.00572 * 185.74444 * 6 5 4 8 8 C 1.38817 * 119.99830 * 5.74989 * 6 5 4 9 9 N 1.31617 * 120.00197 * 353.14454 * 8 6 5 10 10 Si 1.86801 * 120.00033 * 173.14827 * 8 6 5 11 11 H 1.48495 * 109.46982 * 275.00832 * 10 8 6 12 12 H 1.48499 * 109.47145 * 35.00837 * 10 8 6 13 13 H 1.48496 * 109.46922 * 155.00839 * 10 8 6 14 14 C 1.47427 * 108.70136 * 358.59062 * 5 4 2 15 15 C 1.54911 * 104.83062 * 24.35221 * 14 5 4 16 16 H 1.09000 * 111.00393 * 81.06932 * 15 14 5 17 17 C 1.53000 * 111.00440 * 204.91635 * 15 14 5 18 18 N 1.46504 * 109.47328 * 293.54665 * 17 15 14 19 19 C 1.34775 * 120.00271 * 179.97438 * 18 17 15 20 20 O 1.21276 * 120.00043 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99953 * 180.02562 * 19 18 17 22 22 H 1.09003 * 109.46581 * 299.99718 * 21 19 18 23 23 C 1.52993 * 109.47426 * 59.99859 * 21 19 18 24 24 C 1.52997 * 109.47334 * 180.02562 * 23 21 19 25 25 C 1.53000 * 109.46978 * 300.00263 * 24 23 21 26 26 C 1.52993 * 109.47303 * 59.99717 * 25 24 23 27 27 F 1.39903 * 109.47494 * 180.02562 * 26 25 24 28 28 F 1.39902 * 109.47250 * 60.00055 * 26 25 24 29 29 C 1.52997 * 109.47334 * 300.00064 * 26 25 24 30 30 H 1.09000 * 109.46828 * 296.75937 * 1 2 3 31 31 H 1.09000 * 109.47176 * 56.75998 * 1 2 3 32 32 H 1.09006 * 109.47034 * 176.76219 * 1 2 3 33 33 H 1.08999 * 109.99120 * 100.20136 * 4 2 1 34 34 H 1.09000 * 109.78485 * 339.03126 * 4 2 1 35 35 H 0.96992 * 120.00787 * 179.97438 * 9 8 6 36 36 H 1.09000 * 110.36594 * 143.19126 * 14 5 4 37 37 H 1.08993 * 110.36560 * 265.40730 * 14 5 4 38 38 H 1.09003 * 109.47256 * 53.54758 * 17 15 14 39 39 H 1.08996 * 109.47436 * 173.55053 * 17 15 14 40 40 H 0.97006 * 119.99529 * 0.02562 * 18 17 15 41 41 H 1.09002 * 109.47440 * 300.00360 * 23 21 19 42 42 H 1.09003 * 109.46835 * 60.00259 * 23 21 19 43 43 H 1.08995 * 109.47348 * 180.02562 * 24 23 21 44 44 H 1.09003 * 109.47442 * 59.99941 * 24 23 21 45 45 H 1.09003 * 109.47256 * 299.99876 * 25 24 23 46 46 H 1.09004 * 109.47252 * 180.02562 * 25 24 23 47 47 H 1.09003 * 109.47026 * 299.99720 * 29 26 25 48 48 H 1.09004 * 109.47483 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0792 -0.7870 -1.2086 5 7 3.2445 -1.5508 -0.7390 6 6 4.0042 -2.3970 -1.5017 7 1 4.7851 -2.9844 -1.0418 8 6 3.7708 -2.4998 -2.8663 9 7 2.7363 -1.8897 -3.4048 10 14 4.9248 -3.5040 -3.9382 11 1 6.0805 -2.6642 -4.3433 12 1 5.4116 -4.6808 -3.1743 13 1 4.1996 -3.9655 -5.1491 14 6 3.4633 -1.2498 0.6875 15 6 2.0790 -0.7955 1.2138 16 1 1.4452 -1.6536 1.4375 17 6 2.2278 0.1080 2.4396 18 7 2.7774 -0.6678 3.5542 19 6 2.9963 -0.0750 4.7446 20 8 2.7378 1.1005 4.8933 21 6 3.5623 -0.8729 5.8909 22 1 2.8892 -1.6972 6.1270 23 6 4.9321 -1.4295 5.4978 24 6 5.5063 -2.2401 6.6614 25 6 5.6555 -1.3370 7.8874 26 6 4.2857 -0.7804 8.2806 27 9 4.4221 0.0458 9.4013 28 9 3.4217 -1.8384 8.5830 29 6 3.7114 0.0302 7.1170 30 1 -0.3633 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0261 -0.0580 33 1 2.3814 -0.0970 -1.9964 34 1 1.3155 -1.4687 -1.5829 35 1 2.5733 -1.9612 -4.3582 36 1 3.7960 -2.1427 1.2169 37 1 4.1945 -0.4492 0.7985 38 1 2.9008 0.9323 2.2038 39 1 1.2518 0.5044 2.7194 40 1 2.9845 -1.6080 3.4351 41 1 4.8258 -2.0732 4.6246 42 1 5.6050 -0.6051 5.2617 43 1 6.4824 -2.6362 6.3815 44 1 4.8333 -3.0644 6.8971 45 1 6.3286 -0.5126 7.6518 46 1 6.0651 -1.9143 8.7163 47 1 4.3845 0.8545 6.8813 48 1 2.7353 0.4264 7.3969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092962124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:55 Heat of formation + Delta-G solvation = -142.907625 kcal Electronic energy + Delta-G solvation = -29168.727682 eV Core-core repulsion = 24893.562535 eV Total energy + Delta-G solvation = -4275.165146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -49.25103 -47.23809 -40.25460 -38.23724 -37.25823 -34.75530 -33.00434 -31.77793 -30.76942 -30.47253 -29.11511 -26.09101 -25.37000 -24.15359 -23.13475 -22.63547 -20.98571 -20.23543 -19.98840 -19.22392 -18.02649 -17.24067 -16.84969 -16.70186 -16.26589 -15.91125 -15.61767 -14.99037 -14.97185 -14.47577 -14.24970 -13.98954 -13.76134 -13.65350 -13.56695 -13.32645 -13.15748 -12.98931 -12.87524 -12.55625 -12.55263 -12.24921 -11.85908 -11.72055 -11.60906 -11.46943 -11.30415 -11.23798 -11.17661 -10.84169 -10.80791 -10.75463 -10.22988 -10.04616 -10.01733 -9.92026 -9.70283 -9.55079 -9.01623 -8.61505 -6.86246 -5.75847 -3.08529 2.54132 3.00793 3.37345 3.42315 3.44121 3.47950 3.80722 3.89485 4.02525 4.40568 4.45826 4.48670 4.64197 4.75181 4.78924 4.95563 5.03306 5.09575 5.19197 5.27414 5.34957 5.39419 5.46243 5.47844 5.54365 5.54820 5.61450 5.69077 5.72008 5.83998 5.85064 5.98829 6.06425 6.15222 6.24162 6.40345 6.45477 6.51887 6.59197 6.72325 6.90342 7.46691 7.53028 7.61526 7.80052 8.15220 8.22548 9.18152 9.78858 10.45416 11.36100 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.002545 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.932987 B =11000.336994 C =12235.341441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.067 0.933 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.288 1.288 12 H -0.282 1.282 13 H -0.291 1.291 14 C 0.143 3.857 15 C -0.113 4.113 16 H 0.080 0.920 17 C 0.132 3.868 18 N -0.721 5.721 19 C 0.518 3.482 20 O -0.543 6.543 21 C -0.107 4.107 22 H 0.107 0.893 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.160 4.160 26 C 0.289 3.711 27 F -0.201 7.201 28 F -0.200 7.200 29 C -0.138 4.138 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.253 0.747 36 H 0.034 0.966 37 H 0.019 0.981 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.402 0.598 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.102 0.898 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.006 1.030 21.163 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.332 5.332 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.740 3.260 11 H -0.215 1.215 12 H -0.208 1.208 13 H -0.217 1.217 14 C 0.016 3.984 15 C -0.133 4.133 16 H 0.098 0.902 17 C 0.009 3.991 18 N -0.372 5.372 19 C 0.304 3.696 20 O -0.421 6.421 21 C -0.128 4.128 22 H 0.125 0.875 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.198 4.198 26 C 0.253 3.747 27 F -0.182 7.182 28 F -0.181 7.181 29 C -0.176 4.176 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.237 0.763 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.106 0.894 47 H 0.121 0.879 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.798 1.798 21.043 21.197 hybrid contribution 0.575 -0.967 -0.565 1.259 sum 2.374 0.831 20.478 20.632 Atomic orbital electron populations 1.21692 0.95278 1.01624 1.00587 1.22437 0.95160 0.99125 0.96284 0.91442 1.21236 0.88978 0.93158 0.90813 1.44450 1.32550 1.51353 1.04855 1.19016 1.11415 1.16323 0.89193 0.90519 1.24823 0.98282 1.00498 0.96685 1.69964 1.27974 1.47467 1.11194 0.86173 0.80222 0.79386 0.80196 1.21535 1.20760 1.21716 1.21550 0.92988 0.96900 0.86930 1.22681 0.99425 0.98095 0.93124 0.90165 1.21410 0.98626 0.94280 0.84797 1.46066 1.65215 1.14508 1.11364 1.20306 0.78017 0.87689 0.83602 1.90708 1.52019 1.16249 1.83108 1.21270 0.99224 0.98937 0.93377 0.87524 1.21654 0.94489 1.00587 0.98880 1.21513 1.02805 0.97975 0.93186 1.22560 0.94463 1.02087 1.00671 1.21105 0.90607 0.79753 0.83227 1.93013 1.96464 1.73105 1.55645 1.92995 1.72431 1.58497 1.94164 1.22292 1.04758 0.98478 0.92084 0.93654 0.92752 0.92707 0.93787 0.93621 0.93692 0.94762 0.96350 0.91368 0.91644 0.76305 0.89960 0.90510 0.89794 0.90507 0.88571 0.89365 0.87931 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.16 37.16 0.34 -1.69 16 2 C -0.11 -1.94 3.01 -88.78 -0.27 -2.20 16 3 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 4 C 0.18 4.27 4.98 -3.06 -0.02 4.26 16 5 N -0.61 -14.88 3.39 -170.07 -0.58 -15.46 16 6 C -0.23 -6.27 10.26 -15.06 -0.15 -6.43 16 7 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 8 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 9 N -0.92 -26.55 10.36 55.49 0.57 -25.97 16 10 Si 0.91 21.67 29.56 -169.99 -5.02 16.65 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.14 2.71 6.40 -2.53 -0.02 2.70 16 15 C -0.11 -1.78 2.56 -88.47 -0.23 -2.01 16 16 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 17 C 0.13 1.80 5.13 -4.04 -0.02 1.78 16 18 N -0.72 -8.30 5.30 -60.29 -0.32 -8.62 16 19 C 0.52 6.21 7.15 -10.99 -0.08 6.13 16 20 O -0.54 -8.54 15.98 5.56 0.09 -8.45 16 21 C -0.11 -0.93 2.40 -91.78 -0.22 -1.15 16 22 H 0.11 0.83 7.80 -51.93 -0.41 0.43 16 23 C -0.12 -0.83 5.10 -26.74 -0.14 -0.96 16 24 C -0.12 -0.68 5.80 -26.73 -0.16 -0.84 16 25 C -0.16 -1.02 5.45 -26.73 -0.15 -1.17 16 26 C 0.29 2.54 2.10 -26.74 -0.06 2.48 16 27 F -0.20 -2.10 17.06 2.25 0.04 -2.06 16 28 F -0.20 -2.00 16.02 2.25 0.04 -1.97 16 29 C -0.14 -1.26 4.02 -26.73 -0.11 -1.37 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.04 1.16 7.39 -51.93 -0.38 0.78 16 34 H 0.05 1.18 7.16 -51.93 -0.37 0.81 16 35 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.02 0.36 8.01 -51.93 -0.42 -0.05 16 38 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.40 3.90 7.75 -40.82 -0.32 3.59 16 41 H 0.08 0.54 7.56 -51.93 -0.39 0.14 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.46 7.80 -51.93 -0.41 0.05 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.95 8.10 -51.93 -0.42 0.52 16 48 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -31.85 381.24 -8.93 -40.78 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.14 Total: 0.10 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.35 Total: -0.73 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.32 Total: -50.06 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.07 Total: -4.03 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.85 -8.93 -40.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092962124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.127 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds