Wall clock time and date at job start Tue Mar 31 2020 17:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.77928 * 2 1 4 4 C 1.54332 * 110.84822 * 236.92892 * 2 1 3 5 5 N 1.47025 * 107.26803 * 219.66964 * 4 2 1 6 6 C 1.36929 * 125.65197 * 178.84694 * 5 4 2 7 7 H 1.08000 * 120.00572 * 185.74444 * 6 5 4 8 8 C 1.38817 * 119.99830 * 5.74989 * 6 5 4 9 9 N 1.31617 * 120.00197 * 353.14454 * 8 6 5 10 10 Si 1.86801 * 120.00033 * 173.14827 * 8 6 5 11 11 H 1.48495 * 109.46982 * 275.00832 * 10 8 6 12 12 H 1.48499 * 109.47145 * 35.00837 * 10 8 6 13 13 H 1.48496 * 109.46922 * 155.00839 * 10 8 6 14 14 C 1.47427 * 108.70136 * 358.59062 * 5 4 2 15 15 C 1.54911 * 104.83062 * 24.35221 * 14 5 4 16 16 H 1.09000 * 111.00393 * 81.06932 * 15 14 5 17 17 C 1.53000 * 111.00440 * 204.91635 * 15 14 5 18 18 N 1.46504 * 109.47328 * 293.54665 * 17 15 14 19 19 C 1.34775 * 120.00271 * 179.97438 * 18 17 15 20 20 O 1.21276 * 120.00043 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99953 * 180.02562 * 19 18 17 22 22 H 1.09003 * 109.46581 * 299.99718 * 21 19 18 23 23 C 1.52993 * 109.47426 * 59.99859 * 21 19 18 24 24 C 1.52997 * 109.47334 * 180.02562 * 23 21 19 25 25 C 1.53000 * 109.46978 * 300.00263 * 24 23 21 26 26 C 1.52993 * 109.47303 * 59.99717 * 25 24 23 27 27 F 1.39903 * 109.47494 * 180.02562 * 26 25 24 28 28 F 1.39902 * 109.47250 * 60.00055 * 26 25 24 29 29 C 1.52997 * 109.47334 * 300.00064 * 26 25 24 30 30 H 1.09000 * 109.46828 * 296.75937 * 1 2 3 31 31 H 1.09000 * 109.47176 * 56.75998 * 1 2 3 32 32 H 1.09006 * 109.47034 * 176.76219 * 1 2 3 33 33 H 1.08999 * 109.99120 * 100.20136 * 4 2 1 34 34 H 1.09000 * 109.78485 * 339.03126 * 4 2 1 35 35 H 0.96992 * 120.00787 * 179.97438 * 9 8 6 36 36 H 1.09000 * 110.36594 * 143.19126 * 14 5 4 37 37 H 1.08993 * 110.36560 * 265.40730 * 14 5 4 38 38 H 1.09003 * 109.47256 * 53.54758 * 17 15 14 39 39 H 1.08996 * 109.47436 * 173.55053 * 17 15 14 40 40 H 0.97006 * 119.99529 * 0.02562 * 18 17 15 41 41 H 1.09002 * 109.47440 * 300.00360 * 23 21 19 42 42 H 1.09003 * 109.46835 * 60.00259 * 23 21 19 43 43 H 1.08995 * 109.47348 * 180.02562 * 24 23 21 44 44 H 1.09003 * 109.47442 * 59.99941 * 24 23 21 45 45 H 1.09003 * 109.47256 * 299.99876 * 25 24 23 46 46 H 1.09004 * 109.47252 * 180.02562 * 25 24 23 47 47 H 1.09003 * 109.47026 * 299.99720 * 29 26 25 48 48 H 1.09004 * 109.47483 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0792 -0.7870 -1.2086 5 7 3.2445 -1.5508 -0.7390 6 6 4.0042 -2.3970 -1.5017 7 1 4.7851 -2.9844 -1.0418 8 6 3.7708 -2.4998 -2.8663 9 7 2.7363 -1.8897 -3.4048 10 14 4.9248 -3.5040 -3.9382 11 1 6.0805 -2.6642 -4.3433 12 1 5.4116 -4.6808 -3.1743 13 1 4.1996 -3.9655 -5.1491 14 6 3.4633 -1.2498 0.6875 15 6 2.0790 -0.7955 1.2138 16 1 1.4452 -1.6536 1.4375 17 6 2.2278 0.1080 2.4396 18 7 2.7774 -0.6678 3.5542 19 6 2.9963 -0.0750 4.7446 20 8 2.7378 1.1005 4.8933 21 6 3.5623 -0.8729 5.8909 22 1 2.8892 -1.6972 6.1270 23 6 4.9321 -1.4295 5.4978 24 6 5.5063 -2.2401 6.6614 25 6 5.6555 -1.3370 7.8874 26 6 4.2857 -0.7804 8.2806 27 9 4.4221 0.0458 9.4013 28 9 3.4217 -1.8384 8.5830 29 6 3.7114 0.0302 7.1170 30 1 -0.3633 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0261 -0.0580 33 1 2.3814 -0.0970 -1.9964 34 1 1.3155 -1.4687 -1.5829 35 1 2.5733 -1.9612 -4.3582 36 1 3.7960 -2.1427 1.2169 37 1 4.1945 -0.4492 0.7985 38 1 2.9008 0.9323 2.2038 39 1 1.2518 0.5044 2.7194 40 1 2.9845 -1.6080 3.4351 41 1 4.8258 -2.0732 4.6246 42 1 5.6050 -0.6051 5.2617 43 1 6.4824 -2.6362 6.3815 44 1 4.8333 -3.0644 6.8971 45 1 6.3286 -0.5126 7.6518 46 1 6.0651 -1.9143 8.7163 47 1 4.3845 0.8545 6.8813 48 1 2.7353 0.4264 7.3969 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092962124.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:53 Heat of formation + Delta-G solvation = -161.583173 kcal Electronic energy + Delta-G solvation = -29169.537514 eV Core-core repulsion = 24893.562535 eV Total energy + Delta-G solvation = -4275.974979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -49.98338 -47.98586 -41.20862 -39.67998 -38.03727 -36.05943 -34.67361 -32.54396 -32.45892 -31.26469 -30.33542 -27.84465 -26.75937 -25.21996 -24.05795 -23.71423 -21.93111 -21.50972 -21.10261 -20.52215 -18.99646 -18.64616 -17.97001 -17.42337 -17.36179 -16.84453 -16.61963 -16.47111 -15.91320 -15.69381 -15.55567 -15.14057 -14.80627 -14.76384 -14.42731 -14.32056 -14.19919 -14.13532 -13.91448 -13.62883 -13.45586 -13.26550 -13.21309 -13.11308 -12.87208 -12.83460 -12.64025 -12.40542 -12.24165 -11.93431 -11.88790 -11.81433 -11.73738 -11.56319 -11.43574 -11.37052 -11.30959 -10.71923 -10.65192 -10.06215 -8.86748 -7.84258 -5.18432 1.46814 1.49264 1.56753 1.60613 2.09457 2.50743 2.81958 3.12721 3.25146 3.34398 3.37737 3.62582 3.71588 3.80826 3.86618 3.95017 3.97722 4.05201 4.14297 4.22117 4.31568 4.39602 4.49278 4.52066 4.61208 4.74693 4.77280 4.84012 4.87331 4.88476 4.90990 4.93620 4.99040 5.10408 5.12417 5.14658 5.18598 5.34224 5.35425 5.41359 5.48380 5.51887 5.73647 5.82184 6.22014 6.54504 7.11971 7.22240 7.80392 8.45384 9.26541 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.017707 B = 0.002545 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.932987 B =11000.336994 C =12235.341441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 H 0.072 0.928 4 C 0.191 3.809 5 N -0.629 5.629 6 C -0.241 4.241 7 H 0.086 0.914 8 C -0.067 4.067 9 N -0.951 5.951 10 Si 0.975 3.025 11 H -0.288 1.288 12 H -0.266 1.266 13 H -0.298 1.298 14 C 0.139 3.861 15 C -0.091 4.091 16 H 0.089 0.911 17 C 0.144 3.856 18 N -0.713 5.713 19 C 0.519 3.481 20 O -0.583 6.583 21 C -0.097 4.097 22 H 0.120 0.880 23 C -0.117 4.117 24 C -0.112 4.112 25 C -0.157 4.157 26 C 0.286 3.714 27 F -0.213 7.213 28 F -0.207 7.207 29 C -0.137 4.137 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.001 0.999 34 H 0.012 0.988 35 H 0.245 0.755 36 H 0.052 0.948 37 H 0.018 0.982 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.414 0.586 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -0.046 22.981 23.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.091 0.909 4 C 0.066 3.934 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.103 0.897 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.803 3.197 11 H -0.215 1.215 12 H -0.190 1.190 13 H -0.224 1.224 14 C 0.014 3.986 15 C -0.111 4.111 16 H 0.107 0.893 17 C 0.020 3.980 18 N -0.365 5.365 19 C 0.307 3.693 20 O -0.463 6.463 21 C -0.119 4.119 22 H 0.138 0.862 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.195 4.195 26 C 0.250 3.750 27 F -0.194 7.194 28 F -0.189 7.189 29 C -0.175 4.175 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.019 0.981 34 H 0.030 0.970 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.036 0.964 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.250 0.750 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.119 0.881 44 H 0.097 0.903 45 H 0.124 0.876 46 H 0.116 0.884 47 H 0.118 0.882 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.730 0.695 22.903 23.076 hybrid contribution 0.297 -0.600 -1.095 1.284 sum 3.027 0.095 21.808 22.017 Atomic orbital electron populations 1.21639 0.93098 1.01657 1.02120 1.22312 0.96884 0.98556 0.94398 0.90930 1.20982 0.88071 0.91994 0.92367 1.44784 1.32611 1.50965 1.07141 1.19459 1.11421 1.16263 0.89819 0.89650 1.25663 0.99869 1.02334 0.98160 1.70193 1.29686 1.49296 1.10773 0.85143 0.77999 0.78369 0.78146 1.21486 1.19050 1.22439 1.21744 0.94905 0.97641 0.84323 1.22476 0.97204 0.98291 0.93080 0.89270 1.21139 0.98940 0.93502 0.84391 1.45949 1.64821 1.14924 1.10768 1.20818 0.77109 0.87327 0.84082 1.90697 1.53695 1.18142 1.83757 1.21247 1.00480 0.98528 0.91603 0.86187 1.21686 0.93168 1.00785 0.99807 1.21509 1.03704 0.97545 0.92183 1.22603 0.92860 1.02648 1.01349 1.21342 0.91782 0.79411 0.82474 1.92989 1.96549 1.73576 1.56320 1.92978 1.72931 1.58741 1.94201 1.22252 1.03952 0.98688 0.92639 0.90630 0.92884 0.93249 0.98114 0.96977 0.94530 0.92938 0.96402 0.92411 0.90947 0.74953 0.89018 0.90747 0.88054 0.90285 0.87600 0.88365 0.88208 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.16 71.98 0.66 -3.02 16 2 C -0.10 -3.50 3.01 -9.60 -0.03 -3.53 16 3 H 0.07 2.44 8.04 -2.39 -0.02 2.42 16 4 C 0.19 9.20 4.98 86.73 0.43 9.63 16 5 N -0.63 -31.05 3.39 -691.97 -2.35 -33.40 16 6 C -0.24 -13.08 10.26 84.04 0.86 -12.22 16 7 H 0.09 4.37 7.84 -2.91 -0.02 4.34 16 8 C -0.07 -3.78 5.48 84.86 0.47 -3.31 16 9 N -0.95 -56.90 10.36 21.65 0.22 -56.68 16 10 Si 0.97 44.97 29.56 68.60 2.03 47.00 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 13 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 14 C 0.14 5.08 6.40 86.86 0.56 5.63 16 15 C -0.09 -2.68 2.56 -9.40 -0.02 -2.70 16 16 H 0.09 2.53 8.05 -2.39 -0.02 2.52 16 17 C 0.14 3.60 5.13 86.38 0.44 4.04 16 18 N -0.71 -14.61 5.30 -463.06 -2.45 -17.07 16 19 C 0.52 11.46 7.15 87.66 0.63 12.09 16 20 O -0.58 -17.70 15.98 -3.02 -0.05 -17.74 16 21 C -0.10 -1.48 2.40 -11.54 -0.03 -1.51 16 22 H 0.12 1.55 7.80 -2.39 -0.02 1.53 16 23 C -0.12 -1.30 5.10 30.59 0.16 -1.14 16 24 C -0.11 -0.95 5.80 30.59 0.18 -0.77 16 25 C -0.16 -1.61 5.45 30.59 0.17 -1.44 16 26 C 0.29 4.58 2.10 30.59 0.06 4.64 16 27 F -0.21 -4.26 17.06 44.97 0.77 -3.49 16 28 F -0.21 -3.82 16.02 44.97 0.72 -3.10 16 29 C -0.14 -2.36 4.02 30.59 0.12 -2.23 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.48 8.07 -2.38 -0.02 1.46 16 33 H 0.00 0.03 7.39 -2.39 -0.02 0.02 16 34 H 0.01 0.65 7.16 -2.39 -0.02 0.63 16 35 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.02 0.68 8.01 -2.39 -0.02 0.66 16 38 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 39 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.41 6.69 7.75 -92.70 -0.72 5.97 16 41 H 0.09 0.87 7.56 -2.39 -0.02 0.85 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.08 0.67 7.80 -2.39 -0.02 0.66 16 45 H 0.11 0.89 8.14 -2.39 -0.02 0.88 16 46 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.10 1.76 8.10 -2.39 -0.02 1.74 16 48 H 0.08 1.60 8.10 -2.38 -0.02 1.58 16 Total: -1.00 -71.08 381.24 3.77 -67.31 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.23 Total: 13.01 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 4.65 Total: 4.16 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -4.58 Total: -107.14 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.05 Total: -17.74 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 1.49 Total: -6.59 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -71.08 3.77 -67.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092962124.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.274 kcal (2) G-P(sol) polarization free energy of solvation -71.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds