Wall clock time and date at job start Tue Mar 31 2020 17:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 110.64120 * 2 1 4 4 C 1.54323 * 110.87141 * 236.75913 * 2 1 3 5 5 N 1.47020 * 107.26852 * 219.36952 * 4 2 1 6 6 C 1.36942 * 125.64578 * 178.98807 * 5 4 2 7 7 H 1.08004 * 119.99818 * 179.97438 * 6 5 4 8 8 C 1.38807 * 120.00335 * 359.97189 * 6 5 4 9 9 N 1.31625 * 119.99847 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46756 * 90.00465 * 10 8 6 12 12 H 1.48500 * 109.46989 * 209.99663 * 10 8 6 13 13 H 1.48488 * 109.47455 * 330.00218 * 10 8 6 14 14 C 1.47421 * 108.70631 * 358.93706 * 5 4 2 15 15 C 1.54910 * 104.82920 * 24.13030 * 14 5 4 16 16 H 1.09004 * 111.03889 * 81.07807 * 15 14 5 17 17 C 1.53006 * 111.00525 * 204.91362 * 15 14 5 18 18 N 1.46504 * 109.46883 * 287.19865 * 17 15 14 19 19 C 1.34775 * 119.99531 * 179.97438 * 18 17 15 20 20 O 1.21279 * 120.00300 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99773 * 179.97438 * 19 18 17 22 22 C 1.52999 * 109.47140 * 299.99798 * 21 19 18 23 23 C 1.52997 * 109.46991 * 179.97438 * 22 21 19 24 24 C 1.52996 * 109.47131 * 60.00689 * 23 22 21 25 25 F 1.39906 * 109.47206 * 180.02562 * 24 23 22 26 26 F 1.39897 * 109.47130 * 59.99622 * 24 23 22 27 27 C 1.53002 * 109.46972 * 299.99541 * 24 23 22 28 28 C 1.52997 * 109.46817 * 60.00267 * 27 24 23 29 29 H 1.09001 * 109.47270 * 296.85494 * 1 2 3 30 30 H 1.08998 * 109.47777 * 56.85209 * 1 2 3 31 31 H 1.09004 * 109.47449 * 176.85637 * 1 2 3 32 32 H 1.08997 * 109.88084 * 338.78751 * 4 2 1 33 33 H 1.08999 * 109.88258 * 99.95645 * 4 2 1 34 34 H 0.96999 * 119.99974 * 180.02562 * 9 8 6 35 35 H 1.08997 * 110.37164 * 265.28782 * 14 5 4 36 36 H 1.09002 * 110.36736 * 142.96106 * 14 5 4 37 37 H 1.09001 * 109.47002 * 47.19362 * 17 15 14 38 38 H 1.08993 * 109.46955 * 167.19799 * 17 15 14 39 39 H 0.96992 * 119.99966 * 359.97438 * 18 17 15 40 40 H 1.08993 * 109.47046 * 60.00641 * 21 19 18 41 41 H 1.08993 * 109.47839 * 300.00357 * 22 21 19 42 42 H 1.09002 * 109.46719 * 60.00199 * 22 21 19 43 43 H 1.09000 * 109.47611 * 300.00067 * 23 22 21 44 44 H 1.09001 * 109.47289 * 180.02562 * 23 22 21 45 45 H 1.08996 * 109.47407 * 300.00487 * 27 24 23 46 46 H 1.09002 * 109.47070 * 180.02562 * 27 24 23 47 47 H 1.09001 * 109.47289 * 179.97438 * 28 27 24 48 48 H 1.08996 * 109.47853 * 59.99797 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0797 -0.7904 -1.2060 5 7 3.2494 -1.5468 -0.7355 6 6 4.0126 -2.3914 -1.4968 7 1 4.8556 -2.9026 -1.0558 8 6 3.7027 -2.5906 -2.8351 9 7 2.6755 -1.9672 -3.3726 10 14 4.7434 -3.7432 -3.8733 11 1 4.1861 -5.1176 -3.7965 12 1 4.7329 -3.2831 -5.2851 13 1 6.1380 -3.7453 -3.3636 14 6 3.4652 -1.2446 0.6911 15 6 2.0790 -0.7934 1.2150 16 1 1.4465 -1.6526 1.4386 17 6 2.2236 0.1111 2.4406 18 7 2.6289 -0.6934 3.5960 19 6 2.8187 -0.1049 4.7935 20 8 2.6536 1.0905 4.9148 21 6 3.2351 -0.9324 5.9822 22 6 2.1731 -1.9986 6.2585 23 6 2.5961 -2.8391 7.4649 24 6 2.7419 -1.9350 8.6905 25 9 3.1293 -2.7035 9.7936 26 9 1.5174 -1.3147 8.9606 27 6 3.8038 -0.8688 8.4143 28 6 3.3808 -0.0282 7.2079 29 1 -0.3634 0.4642 0.9168 30 1 -0.3634 0.5619 -0.8604 31 1 -0.3634 -1.0261 -0.0564 32 1 1.3189 -1.4771 -1.5771 33 1 2.3774 -0.1013 -1.9963 34 1 2.4588 -2.1067 -4.3077 35 1 4.1930 -0.4409 0.8028 36 1 3.7992 -2.1364 1.2215 37 1 2.9797 0.8712 2.2440 38 1 1.2692 0.5936 2.6507 39 1 2.7606 -1.6494 3.4991 40 1 4.1892 -1.4156 5.7722 41 1 1.2190 -1.5154 6.4685 42 1 2.0696 -2.6430 5.3855 43 1 3.5501 -3.3225 7.2545 44 1 1.8398 -3.5990 7.6615 45 1 4.7578 -1.3521 8.2038 46 1 3.9080 -0.2249 9.2876 47 1 4.1371 0.7317 7.0113 48 1 2.4268 0.4551 7.4183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093004464.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:55 Heat of formation + Delta-G solvation = -142.748486 kcal Electronic energy + Delta-G solvation = -29015.167021 eV Core-core repulsion = 24740.008775 eV Total energy + Delta-G solvation = -4275.158246 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -49.27483 -47.26203 -40.25340 -38.23884 -37.20508 -34.74627 -32.99952 -31.58380 -30.91265 -30.74822 -29.04474 -26.04553 -25.24688 -23.84784 -23.55467 -22.58322 -20.99160 -20.21853 -20.01005 -19.19178 -17.79389 -17.30495 -17.18449 -16.72879 -16.60310 -16.00113 -15.45781 -14.96185 -14.47010 -14.41624 -14.33319 -13.89751 -13.80819 -13.78625 -13.57861 -13.33050 -13.16310 -12.97884 -12.80720 -12.60982 -12.50126 -12.14881 -11.96279 -11.84214 -11.72014 -11.62294 -11.42361 -11.24634 -11.11581 -10.84497 -10.80335 -10.54558 -10.21004 -10.03466 -10.01542 -9.92800 -9.69031 -9.54188 -8.99770 -8.63214 -6.86168 -5.74148 -3.07895 2.56675 3.11626 3.37157 3.39311 3.42305 3.44413 3.67415 3.94335 3.97788 4.37725 4.46183 4.47825 4.62559 4.66793 4.81027 4.92345 5.06288 5.16587 5.17415 5.23716 5.29590 5.34072 5.36127 5.50110 5.52079 5.53912 5.56836 5.72841 5.73897 5.84445 5.91448 5.99566 6.07870 6.15588 6.25468 6.41224 6.45895 6.53390 6.59754 6.73216 6.90992 7.48893 7.53673 7.61707 7.80982 8.18393 8.23189 9.19104 9.79502 10.45514 11.37391 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.002374 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.091668 B =11789.395497 C =12615.226607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.067 0.933 4 C 0.184 3.816 5 N -0.607 5.607 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.921 5.921 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.142 3.858 15 C -0.113 4.113 16 H 0.080 0.920 17 C 0.132 3.868 18 N -0.723 5.723 19 C 0.517 3.483 20 O -0.542 6.542 21 C -0.113 4.113 22 C -0.112 4.112 23 C -0.156 4.156 24 C 0.286 3.714 25 F -0.204 7.204 26 F -0.198 7.198 27 C -0.158 4.158 28 C -0.099 4.099 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.252 0.748 35 H 0.018 0.982 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.401 0.599 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 0.393 22.176 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.085 0.915 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.016 3.984 15 C -0.132 4.132 16 H 0.098 0.902 17 C 0.008 3.992 18 N -0.374 5.374 19 C 0.302 3.698 20 O -0.419 6.419 21 C -0.134 4.134 22 C -0.150 4.150 23 C -0.194 4.194 24 C 0.250 3.750 25 F -0.185 7.185 26 F -0.179 7.179 27 C -0.196 4.196 28 C -0.137 4.137 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.236 0.764 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.274 1.185 22.035 22.104 hybrid contribution 0.546 -1.155 -0.570 1.399 sum -0.728 0.030 21.465 21.477 Atomic orbital electron populations 1.21688 0.95299 1.01605 1.00570 1.22437 0.95155 0.99126 0.96332 0.91459 1.21220 0.89039 0.93122 0.90733 1.44466 1.32431 1.51703 1.04664 1.19042 1.07498 1.17900 0.91316 0.90518 1.24805 0.98430 1.00315 0.96899 1.69964 1.28765 1.45504 1.12626 0.86126 0.79532 0.80322 0.79817 1.21617 1.21666 1.20719 1.21577 0.93001 0.96967 0.86865 1.22676 0.99370 0.98052 0.93139 0.90188 1.21413 1.00144 0.93790 0.83840 1.46102 1.69665 1.12269 1.09330 1.20404 0.77148 0.88267 0.83971 1.90705 1.51137 1.15288 1.84787 1.21441 1.00966 0.96852 0.94164 1.21521 0.98995 0.96585 0.97867 1.22512 1.05348 0.98416 0.93145 1.21158 0.81400 0.88580 0.83873 1.93012 1.91193 1.77090 1.57190 1.93005 1.46415 1.83786 1.94721 1.22559 0.98276 0.97593 1.01172 1.21316 1.04226 0.97152 0.90999 0.93670 0.92761 0.92726 0.93304 0.94046 0.93740 0.96388 0.94692 0.91393 0.91639 0.76446 0.87863 0.90104 0.89601 0.88347 0.88985 0.88591 0.89112 0.89535 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.17 37.15 0.34 -1.69 16 2 C -0.11 -1.95 3.01 -88.79 -0.27 -2.21 16 3 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 4 C 0.18 4.30 4.97 -3.07 -0.02 4.29 16 5 N -0.61 -14.98 3.39 -170.08 -0.58 -15.55 16 6 C -0.23 -6.25 10.28 -15.06 -0.15 -6.40 16 7 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -26.67 10.31 55.49 0.57 -26.09 16 10 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.14 2.73 6.65 -2.53 -0.02 2.72 16 15 C -0.11 -1.77 2.49 -88.47 -0.22 -1.99 16 16 H 0.08 1.23 8.05 -51.93 -0.42 0.82 16 17 C 0.13 1.79 5.13 -4.04 -0.02 1.77 16 18 N -0.72 -8.16 5.39 -60.29 -0.33 -8.49 16 19 C 0.52 6.06 7.15 -10.98 -0.08 5.98 16 20 O -0.54 -8.50 15.98 5.56 0.09 -8.41 16 21 C -0.11 -0.90 2.53 -91.77 -0.23 -1.13 16 22 C -0.11 -0.76 4.98 -26.73 -0.13 -0.89 16 23 C -0.16 -0.96 5.45 -26.73 -0.15 -1.10 16 24 C 0.29 2.29 2.10 -26.73 -0.06 2.23 16 25 F -0.20 -1.92 17.06 2.25 0.04 -1.88 16 26 F -0.20 -2.02 16.03 2.25 0.04 -1.98 16 27 C -0.16 -1.05 5.45 -26.73 -0.15 -1.19 16 28 C -0.10 -0.81 4.37 -26.73 -0.12 -0.93 16 29 H 0.04 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.05 1.27 7.02 -51.93 -0.36 0.90 16 33 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 34 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.02 0.36 7.91 -51.93 -0.41 -0.05 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.02 7.96 -51.93 -0.41 0.60 16 38 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.40 3.73 7.89 -40.82 -0.32 3.41 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.65 7.80 -51.93 -0.41 0.25 16 42 H 0.09 0.48 7.57 -51.93 -0.39 0.09 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 48 H 0.08 0.80 7.76 -51.93 -0.40 0.40 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -32.32 381.24 -8.92 -41.25 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.12 Total: -0.44 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.36 Total: -0.87 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.33 Total: -50.13 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.07 Total: -3.86 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.32 -8.92 -41.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093004464.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.501 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds