Wall clock time and date at job start Tue Mar 31 2020 17:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 110.64120 * 2 1 4 4 C 1.54323 * 110.87141 * 236.75913 * 2 1 3 5 5 N 1.47020 * 107.26852 * 219.36952 * 4 2 1 6 6 C 1.36942 * 125.64578 * 178.98807 * 5 4 2 7 7 H 1.08004 * 119.99818 * 179.97438 * 6 5 4 8 8 C 1.38807 * 120.00335 * 359.97189 * 6 5 4 9 9 N 1.31625 * 119.99847 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46756 * 90.00465 * 10 8 6 12 12 H 1.48500 * 109.46989 * 209.99663 * 10 8 6 13 13 H 1.48488 * 109.47455 * 330.00218 * 10 8 6 14 14 C 1.47421 * 108.70631 * 358.93706 * 5 4 2 15 15 C 1.54910 * 104.82920 * 24.13030 * 14 5 4 16 16 H 1.09004 * 111.03889 * 81.07807 * 15 14 5 17 17 C 1.53006 * 111.00525 * 204.91362 * 15 14 5 18 18 N 1.46504 * 109.46883 * 287.19865 * 17 15 14 19 19 C 1.34775 * 119.99531 * 179.97438 * 18 17 15 20 20 O 1.21279 * 120.00300 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99773 * 179.97438 * 19 18 17 22 22 C 1.52999 * 109.47140 * 299.99798 * 21 19 18 23 23 C 1.52997 * 109.46991 * 179.97438 * 22 21 19 24 24 C 1.52996 * 109.47131 * 60.00689 * 23 22 21 25 25 F 1.39906 * 109.47206 * 180.02562 * 24 23 22 26 26 F 1.39897 * 109.47130 * 59.99622 * 24 23 22 27 27 C 1.53002 * 109.46972 * 299.99541 * 24 23 22 28 28 C 1.52997 * 109.46817 * 60.00267 * 27 24 23 29 29 H 1.09001 * 109.47270 * 296.85494 * 1 2 3 30 30 H 1.08998 * 109.47777 * 56.85209 * 1 2 3 31 31 H 1.09004 * 109.47449 * 176.85637 * 1 2 3 32 32 H 1.08997 * 109.88084 * 338.78751 * 4 2 1 33 33 H 1.08999 * 109.88258 * 99.95645 * 4 2 1 34 34 H 0.96999 * 119.99974 * 180.02562 * 9 8 6 35 35 H 1.08997 * 110.37164 * 265.28782 * 14 5 4 36 36 H 1.09002 * 110.36736 * 142.96106 * 14 5 4 37 37 H 1.09001 * 109.47002 * 47.19362 * 17 15 14 38 38 H 1.08993 * 109.46955 * 167.19799 * 17 15 14 39 39 H 0.96992 * 119.99966 * 359.97438 * 18 17 15 40 40 H 1.08993 * 109.47046 * 60.00641 * 21 19 18 41 41 H 1.08993 * 109.47839 * 300.00357 * 22 21 19 42 42 H 1.09002 * 109.46719 * 60.00199 * 22 21 19 43 43 H 1.09000 * 109.47611 * 300.00067 * 23 22 21 44 44 H 1.09001 * 109.47289 * 180.02562 * 23 22 21 45 45 H 1.08996 * 109.47407 * 300.00487 * 27 24 23 46 46 H 1.09002 * 109.47070 * 180.02562 * 27 24 23 47 47 H 1.09001 * 109.47289 * 179.97438 * 28 27 24 48 48 H 1.08996 * 109.47853 * 59.99797 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0797 -0.7904 -1.2060 5 7 3.2494 -1.5468 -0.7355 6 6 4.0126 -2.3914 -1.4968 7 1 4.8556 -2.9026 -1.0558 8 6 3.7027 -2.5906 -2.8351 9 7 2.6755 -1.9672 -3.3726 10 14 4.7434 -3.7432 -3.8733 11 1 4.1861 -5.1176 -3.7965 12 1 4.7329 -3.2831 -5.2851 13 1 6.1380 -3.7453 -3.3636 14 6 3.4652 -1.2446 0.6911 15 6 2.0790 -0.7934 1.2150 16 1 1.4465 -1.6526 1.4386 17 6 2.2236 0.1111 2.4406 18 7 2.6289 -0.6934 3.5960 19 6 2.8187 -0.1049 4.7935 20 8 2.6536 1.0905 4.9148 21 6 3.2351 -0.9324 5.9822 22 6 2.1731 -1.9986 6.2585 23 6 2.5961 -2.8391 7.4649 24 6 2.7419 -1.9350 8.6905 25 9 3.1293 -2.7035 9.7936 26 9 1.5174 -1.3147 8.9606 27 6 3.8038 -0.8688 8.4143 28 6 3.3808 -0.0282 7.2079 29 1 -0.3634 0.4642 0.9168 30 1 -0.3634 0.5619 -0.8604 31 1 -0.3634 -1.0261 -0.0564 32 1 1.3189 -1.4771 -1.5771 33 1 2.3774 -0.1013 -1.9963 34 1 2.4588 -2.1067 -4.3077 35 1 4.1930 -0.4409 0.8028 36 1 3.7992 -2.1364 1.2215 37 1 2.9797 0.8712 2.2440 38 1 1.2692 0.5936 2.6507 39 1 2.7606 -1.6494 3.4991 40 1 4.1892 -1.4156 5.7722 41 1 1.2190 -1.5154 6.4685 42 1 2.0696 -2.6430 5.3855 43 1 3.5501 -3.3225 7.2545 44 1 1.8398 -3.5990 7.6615 45 1 4.7578 -1.3521 8.2038 46 1 3.9080 -0.2249 9.2876 47 1 4.1371 0.7317 7.0113 48 1 2.4268 0.4551 7.4183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093004464.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:53 Heat of formation + Delta-G solvation = -162.127370 kcal Electronic energy + Delta-G solvation = -29016.007353 eV Core-core repulsion = 24740.008775 eV Total energy + Delta-G solvation = -4275.998577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -49.93266 -47.93996 -41.16963 -39.67979 -37.98668 -36.03530 -34.66476 -32.53172 -32.17048 -31.68492 -30.29964 -27.82589 -26.66294 -24.93962 -24.17447 -23.80118 -21.88649 -21.57303 -21.06879 -20.47391 -18.86596 -18.42184 -18.03293 -17.84516 -17.26475 -17.11082 -16.67801 -16.33604 -15.83869 -15.61214 -15.14125 -15.06601 -14.95114 -14.52923 -14.47328 -14.35461 -14.23593 -14.11099 -13.92512 -13.44296 -13.39434 -13.30830 -13.10302 -13.06961 -12.83076 -12.75713 -12.68010 -12.60369 -12.38694 -12.18335 -11.92945 -11.82154 -11.70085 -11.54636 -11.38353 -11.34458 -11.10009 -10.72384 -10.67008 -10.02615 -8.87551 -7.83154 -5.18607 1.46932 1.48568 1.57111 1.66935 2.21214 2.50685 2.83802 3.14516 3.32936 3.35095 3.43914 3.63739 3.76523 3.77687 3.88284 3.95816 3.97425 4.01468 4.09845 4.32878 4.35710 4.40298 4.51722 4.61976 4.63977 4.68360 4.75887 4.83050 4.85644 4.88290 4.90243 4.98052 4.99344 5.02758 5.10555 5.16952 5.18196 5.29735 5.35827 5.42541 5.49269 5.53502 5.73127 5.83415 6.22055 6.60585 7.12196 7.29096 7.80384 8.44777 9.27120 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.002374 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.091668 B =11789.395497 C =12615.226607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 H 0.071 0.929 4 C 0.192 3.808 5 N -0.630 5.630 6 C -0.240 4.240 7 H 0.085 0.915 8 C -0.069 4.069 9 N -0.952 5.952 10 Si 0.977 3.023 11 H -0.284 1.284 12 H -0.298 1.298 13 H -0.268 1.268 14 C 0.138 3.862 15 C -0.089 4.089 16 H 0.091 0.909 17 C 0.144 3.856 18 N -0.715 5.715 19 C 0.516 3.484 20 O -0.585 6.585 21 C -0.105 4.105 22 C -0.108 4.108 23 C -0.151 4.151 24 C 0.275 3.725 25 F -0.213 7.213 26 F -0.216 7.216 27 C -0.151 4.151 28 C -0.096 4.096 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.016 0.984 33 H -0.003 1.003 34 H 0.245 0.755 35 H 0.016 0.984 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.414 0.586 40 H 0.133 0.867 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.123 0.877 44 H 0.096 0.904 45 H 0.120 0.880 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 -0.958 23.955 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 H 0.090 0.910 4 C 0.067 3.933 5 N -0.356 5.356 6 C -0.369 4.369 7 H 0.103 0.897 8 C -0.261 4.261 9 N -0.601 5.601 10 Si 0.806 3.194 11 H -0.211 1.211 12 H -0.225 1.225 13 H -0.193 1.193 14 C 0.013 3.987 15 C -0.109 4.109 16 H 0.109 0.891 17 C 0.020 3.980 18 N -0.367 5.367 19 C 0.303 3.697 20 O -0.465 6.465 21 C -0.126 4.126 22 C -0.146 4.146 23 C -0.189 4.189 24 C 0.239 3.761 25 F -0.194 7.194 26 F -0.197 7.197 27 C -0.189 4.189 28 C -0.135 4.135 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.016 0.984 34 H 0.055 0.945 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.251 0.749 40 H 0.151 0.849 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.141 0.859 44 H 0.115 0.885 45 H 0.139 0.861 46 H 0.109 0.891 47 H 0.100 0.900 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.429 -0.192 23.858 23.863 hybrid contribution 0.315 -0.693 -1.089 1.329 sum -0.114 -0.886 22.769 22.787 Atomic orbital electron populations 1.21632 0.93073 1.01673 1.02081 1.22312 0.96908 0.98530 0.94490 0.91018 1.20968 0.88145 0.91959 0.92257 1.44802 1.32428 1.51369 1.06956 1.19474 1.07738 1.17755 0.91896 0.89749 1.25655 0.99883 1.02308 0.98302 1.70198 1.30480 1.47143 1.12318 0.85094 0.78562 0.78259 0.77524 1.21129 1.22488 1.19317 1.21770 0.95017 0.97598 0.84322 1.22464 0.97022 0.98307 0.93060 0.89074 1.21115 1.00157 0.93126 0.83637 1.45986 1.69291 1.12754 1.08630 1.21045 0.75988 0.87997 0.84652 1.90693 1.52990 1.17401 1.85433 1.21469 1.02589 0.96502 0.92010 1.21505 0.97711 0.96388 0.98964 1.22532 1.06869 0.97902 0.91554 1.21572 0.81010 0.89258 0.84245 1.92992 1.91222 1.77317 1.57852 1.92973 1.47645 1.84202 1.94891 1.22537 0.98815 0.97187 1.00377 1.21246 1.02911 0.97371 0.91923 0.90662 0.92923 0.93202 0.96570 0.98450 0.94547 0.96602 0.92966 0.92640 0.91097 0.74925 0.84933 0.91790 0.87760 0.85903 0.88511 0.86143 0.89077 0.90026 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.17 71.98 0.66 -3.00 16 2 C -0.10 -3.54 3.01 -9.61 -0.03 -3.57 16 3 H 0.07 2.42 8.04 -2.38 -0.02 2.40 16 4 C 0.19 9.26 4.97 86.73 0.43 9.69 16 5 N -0.63 -31.25 3.39 -692.01 -2.35 -33.60 16 6 C -0.24 -13.09 10.28 84.03 0.86 -12.23 16 7 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 8 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 9 N -0.95 -57.05 10.31 21.65 0.22 -56.83 16 10 Si 0.98 45.08 29.55 68.60 2.03 47.11 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 14 C 0.14 5.10 6.65 86.86 0.58 5.68 16 15 C -0.09 -2.62 2.49 -9.40 -0.02 -2.64 16 16 H 0.09 2.54 8.05 -2.39 -0.02 2.52 16 17 C 0.14 3.59 5.13 86.38 0.44 4.03 16 18 N -0.71 -14.12 5.39 -463.05 -2.50 -16.62 16 19 C 0.52 11.00 7.15 87.66 0.63 11.62 16 20 O -0.59 -17.78 15.98 -3.03 -0.05 -17.82 16 21 C -0.10 -1.37 2.53 -11.54 -0.03 -1.40 16 22 C -0.11 -1.15 4.98 30.59 0.15 -0.99 16 23 C -0.15 -1.37 5.45 30.59 0.17 -1.20 16 24 C 0.27 3.85 2.10 30.59 0.06 3.92 16 25 F -0.21 -3.60 17.06 44.97 0.77 -2.83 16 26 F -0.22 -4.24 16.03 44.97 0.72 -3.52 16 27 C -0.15 -1.67 5.45 30.59 0.17 -1.50 16 28 C -0.10 -1.43 4.37 30.60 0.13 -1.30 16 29 H 0.07 1.74 8.09 -2.39 -0.02 1.72 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.48 8.07 -2.39 -0.02 1.46 16 32 H 0.02 0.87 7.02 -2.39 -0.02 0.86 16 33 H 0.00 -0.15 7.50 -2.39 -0.02 -0.17 16 34 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 35 H 0.02 0.61 7.91 -2.39 -0.02 0.59 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.56 7.96 -2.39 -0.02 1.54 16 38 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 39 H 0.41 6.14 7.89 -92.71 -0.73 5.40 16 40 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 0.92 7.80 -2.39 -0.02 0.90 16 42 H 0.10 0.75 7.57 -2.39 -0.02 0.73 16 43 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 48 H 0.06 1.14 7.76 -2.39 -0.02 1.12 16 Total: -1.00 -73.16 381.24 3.73 -69.43 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.22 Total: 10.98 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 4.67 Total: 3.70 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -4.62 Total: -107.05 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.05 Total: -17.82 kcal Atomic # 9 Polarization: -7.84 SS G_CDS: 1.49 Total: -6.35 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -73.16 3.73 -69.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093004464.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.695 kcal (2) G-P(sol) polarization free energy of solvation -73.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds