Wall clock time and date at job start Tue Mar 31 2020 17:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.63903 * 2 1 4 4 C 1.54317 * 110.72103 * 236.66264 * 2 1 3 5 5 N 1.47023 * 107.27329 * 219.44116 * 4 2 1 6 6 C 1.36929 * 125.65360 * 178.91751 * 5 4 2 7 7 H 1.08005 * 120.00226 * 180.02562 * 6 5 4 8 8 C 1.38815 * 120.00019 * 0.02905 * 6 5 4 9 9 N 1.31621 * 119.99805 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00152 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46943 * 59.99856 * 10 8 6 12 12 H 1.48506 * 109.47028 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46961 * 299.99619 * 10 8 6 14 14 C 1.47432 * 108.70083 * 358.94047 * 5 4 2 15 15 C 1.54911 * 104.83106 * 24.12904 * 14 5 4 16 16 H 1.09001 * 111.03735 * 81.07969 * 15 14 5 17 17 C 1.52997 * 111.00218 * 204.91573 * 15 14 5 18 18 N 1.46492 * 109.47217 * 287.19174 * 17 15 14 19 19 C 1.34778 * 120.00075 * 179.97438 * 18 17 15 20 20 O 1.21480 * 119.99871 * 0.02562 * 19 18 17 21 21 C 1.48457 * 119.99984 * 180.02562 * 19 18 17 22 22 C 1.39535 * 120.55021 * 180.02562 * 21 19 18 23 23 C 1.38755 * 118.26863 * 180.02562 * 22 21 19 24 24 N 1.32203 * 119.14423 * 359.97387 * 23 22 21 25 25 C 1.31884 * 121.03783 * 0.04999 * 24 23 22 26 26 C 1.50703 * 119.04107 * 179.97438 * 25 24 23 27 27 C 1.52989 * 117.50122 * 8.72690 * 26 25 24 28 28 C 1.52994 * 117.50028 * 300.05813 * 26 25 24 29 29 N 1.31581 * 121.91843 * 359.95019 * 25 24 23 30 30 H 1.08996 * 109.47381 * 296.86027 * 1 2 3 31 31 H 1.08998 * 109.47350 * 56.86439 * 1 2 3 32 32 H 1.09006 * 109.47228 * 176.85903 * 1 2 3 33 33 H 1.09002 * 109.88193 * 338.85673 * 4 2 1 34 34 H 1.08999 * 109.88962 * 99.87059 * 4 2 1 35 35 H 0.97001 * 120.00082 * 180.02562 * 9 8 6 36 36 H 1.08996 * 110.36803 * 265.28832 * 14 5 4 37 37 H 1.09004 * 110.36757 * 142.96615 * 14 5 4 38 38 H 1.09006 * 109.46952 * 167.19301 * 17 15 14 39 39 H 1.09004 * 109.47341 * 47.19755 * 17 15 14 40 40 H 0.96995 * 120.00277 * 0.02562 * 18 17 15 41 41 H 1.08008 * 120.86763 * 359.74561 * 22 21 19 42 42 H 1.08003 * 120.42975 * 179.97438 * 23 22 21 43 43 H 1.09002 * 115.54748 * 154.39099 * 26 25 24 44 44 H 1.09001 * 117.50301 * 359.97438 * 27 26 25 45 45 H 1.09001 * 117.50688 * 145.02100 * 27 26 25 46 46 H 1.08995 * 117.50241 * 214.97940 * 28 26 25 47 47 H 1.09002 * 117.50001 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7932 -1.2058 5 7 3.2445 -1.5519 -0.7363 6 6 4.0037 -2.4003 -1.4972 7 1 4.8457 -2.9135 -1.0568 8 6 3.6910 -2.6006 -2.8348 9 7 2.6645 -1.9755 -3.3715 10 14 4.7270 -3.7574 -3.8731 11 1 4.6847 -5.1210 -3.2866 12 1 4.1887 -3.7971 -5.2566 13 1 6.1309 -3.2740 -3.9014 14 6 3.4633 -1.2485 0.6897 15 6 2.0790 -0.7933 1.2152 16 1 1.4448 -1.6507 1.4408 17 6 2.2278 0.1123 2.4394 18 7 2.6327 -0.6917 3.5951 19 6 2.8259 -0.1022 4.7917 20 8 2.6637 1.0957 4.9119 21 6 3.2368 -0.9168 5.9628 22 6 3.4394 -0.3185 7.2070 23 6 3.8235 -1.1246 8.2691 24 7 3.9827 -2.4216 8.0683 25 6 3.7833 -2.9550 6.8787 26 6 3.9783 -4.4387 6.7003 27 6 4.2002 -5.2785 7.9597 28 6 5.3647 -5.0104 7.0030 29 7 3.4186 -2.2297 5.8433 30 1 -0.3634 0.4643 0.9167 31 1 -0.3634 0.5617 -0.8605 32 1 -0.3634 -1.0262 -0.0563 33 1 1.3130 -1.4786 -1.5749 34 1 2.3715 -0.1060 -1.9986 35 1 2.4458 -2.1157 -4.3060 36 1 4.1931 -0.4464 0.7993 37 1 3.7961 -2.1404 1.2207 38 1 1.2748 0.5975 2.6504 39 1 2.9853 0.8704 2.2407 40 1 2.7626 -1.6481 3.4991 41 1 3.3053 0.7451 7.3388 42 1 3.9902 -0.6980 9.2472 43 1 3.4136 -4.8925 5.8859 44 1 4.2055 -4.7580 8.9174 45 1 3.7819 -6.2850 7.9738 46 1 5.7120 -5.8406 6.3881 47 1 6.1360 -4.3134 7.3308 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093018859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:00 Heat of formation + Delta-G solvation = 60.869309 kcal Electronic energy + Delta-G solvation = -27593.393872 eV Core-core repulsion = 23777.754343 eV Total energy + Delta-G solvation = -3815.639529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.62036 -39.62838 -38.03343 -37.28218 -34.88138 -34.14106 -32.89872 -32.12892 -30.72807 -29.44059 -26.46521 -25.76280 -25.36748 -24.80645 -22.98812 -22.65520 -21.95327 -20.64981 -20.00809 -19.33927 -18.24490 -18.03033 -16.77234 -16.21968 -15.93410 -15.79713 -15.73624 -15.06533 -15.01740 -14.58773 -14.39076 -14.17984 -13.80562 -13.62292 -13.23266 -12.91688 -12.57091 -12.52147 -11.87324 -11.83729 -11.70161 -11.40617 -11.33934 -11.27366 -11.21615 -11.10232 -10.83180 -10.79345 -10.77461 -10.60275 -10.13933 -10.01440 -9.92319 -9.81198 -9.67737 -9.61928 -9.51156 -9.05600 -8.59125 -6.82189 -5.70209 -3.03620 0.18536 0.54554 2.52805 2.84474 3.27180 3.33282 3.41025 3.45224 3.46463 3.60933 3.84144 4.28807 4.44389 4.50080 4.54257 4.62359 4.68594 4.80850 5.05744 5.14609 5.19051 5.28774 5.34093 5.35971 5.52479 5.52672 5.56086 5.74194 5.75985 5.82945 5.86002 5.92392 6.01261 6.06579 6.17934 6.26615 6.32920 6.47565 6.50413 6.58992 6.62791 6.75022 6.94344 7.37197 7.57414 7.64551 7.65934 7.84487 8.00369 8.27035 9.23201 9.83437 10.49681 11.41363 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011654 B = 0.002848 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.129204 B = 9828.494746 C =11720.793893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.922 5.922 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.141 3.859 15 C -0.113 4.113 16 H 0.082 0.918 17 C 0.129 3.871 18 N -0.696 5.696 19 C 0.566 3.434 20 O -0.529 6.529 21 C 0.141 3.859 22 C -0.180 4.180 23 C 0.153 3.847 24 N -0.506 5.506 25 C 0.351 3.649 26 C -0.105 4.105 27 C -0.153 4.153 28 C -0.153 4.153 29 N -0.489 5.489 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.042 0.958 35 H 0.252 0.748 36 H 0.019 0.981 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.414 0.586 41 H 0.161 0.839 42 H 0.178 0.822 43 H 0.133 0.867 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.402 -0.534 23.470 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.570 5.570 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.015 3.985 15 C -0.133 4.133 16 H 0.100 0.900 17 C 0.006 3.994 18 N -0.347 5.347 19 C 0.349 3.651 20 O -0.405 6.405 21 C -0.008 4.008 22 C -0.203 4.203 23 C -0.014 4.014 24 N -0.220 5.220 25 C 0.084 3.916 26 C -0.125 4.125 27 C -0.190 4.190 28 C -0.192 4.192 29 N -0.205 5.205 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.250 0.750 41 H 0.179 0.821 42 H 0.195 0.805 43 H 0.151 0.849 44 H 0.127 0.873 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.419 -0.683 23.100 23.114 hybrid contribution 0.474 -0.023 -0.602 0.766 sum 0.054 -0.706 22.498 22.509 Atomic orbital electron populations 1.21699 0.95289 1.01664 1.00552 1.22444 0.95172 0.99111 0.96256 0.91376 1.21216 0.89112 0.93077 0.90682 1.44444 1.32605 1.51416 1.04708 1.19012 1.07637 1.17697 0.91366 0.90547 1.24796 0.98424 1.00325 0.96881 1.69951 1.28744 1.45551 1.12712 0.86205 0.79496 0.80546 0.79546 1.21177 1.21612 1.21202 1.21589 0.92896 0.97143 0.86873 1.22687 0.99615 0.98082 0.92923 0.89989 1.21545 1.00406 0.93861 0.83559 1.45965 1.66951 1.13255 1.08516 1.17771 0.78360 0.86542 0.82469 1.90795 1.51684 1.13738 1.84320 1.21725 0.94457 0.90129 0.94446 1.22969 1.00044 1.03897 0.93362 1.23334 0.90279 0.88394 0.99397 1.68053 1.15450 1.13774 1.24728 1.22116 0.90116 0.95762 0.83574 1.20682 1.02994 0.86223 1.02619 1.23045 1.01408 1.00117 0.94467 1.23014 0.90510 1.02855 1.02780 1.68080 1.12643 1.05834 1.33932 0.93683 0.92731 0.92680 0.93286 0.94022 0.93725 0.96367 0.94469 0.91165 0.90913 0.74986 0.82110 0.80537 0.84891 0.87253 0.88018 0.87621 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.16 37.16 0.34 -1.73 16 2 C -0.11 -1.98 3.02 -88.79 -0.27 -2.25 16 3 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 4 C 0.18 4.39 4.97 -3.07 -0.02 4.37 16 5 N -0.61 -15.35 3.39 -170.07 -0.58 -15.93 16 6 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 7 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.02 10.31 55.49 0.57 -26.45 16 10 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 C 0.14 2.86 6.65 -2.52 -0.02 2.85 16 15 C -0.11 -1.88 2.50 -88.47 -0.22 -2.10 16 16 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 17 C 0.13 1.87 5.13 -4.05 -0.02 1.85 16 18 N -0.70 -9.54 5.49 -61.06 -0.34 -9.87 16 19 C 0.57 7.97 7.83 -12.05 -0.09 7.88 16 20 O -0.53 -8.60 16.43 5.38 0.09 -8.51 16 21 C 0.14 1.74 6.79 -82.63 -0.56 1.18 16 22 C -0.18 -1.75 9.72 -38.91 -0.38 -2.13 16 23 C 0.15 1.26 11.31 -17.20 -0.19 1.06 16 24 N -0.51 -5.10 9.33 -10.74 -0.10 -5.20 16 25 C 0.35 3.92 7.31 -157.30 -1.15 2.77 16 26 C -0.11 -0.96 6.23 -91.78 -0.57 -1.53 16 27 C -0.15 -1.09 10.01 -26.70 -0.27 -1.36 16 28 C -0.15 -1.17 10.24 -26.69 -0.27 -1.44 16 29 N -0.49 -6.04 9.60 -7.32 -0.07 -6.11 16 30 H 0.04 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 33 H 0.05 1.29 7.00 -51.93 -0.36 0.93 16 34 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 35 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 39 H 0.07 1.11 7.96 -51.93 -0.41 0.70 16 40 H 0.41 5.44 7.86 -40.82 -0.32 5.12 16 41 H 0.16 1.34 7.74 -52.48 -0.41 0.94 16 42 H 0.18 0.75 8.06 -52.48 -0.42 0.32 16 43 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.11 0.83 7.54 -51.93 -0.39 0.44 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -32.54 388.95 -10.82 -43.36 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.30 Total: 3.22 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -3.94 Total: 2.55 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -0.51 Total: -63.57 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.51 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.54 -10.82 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093018859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.231 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds