Wall clock time and date at job start Tue Mar 31 2020 17:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.63903 * 2 1 4 4 C 1.54317 * 110.72103 * 236.66264 * 2 1 3 5 5 N 1.47023 * 107.27329 * 219.44116 * 4 2 1 6 6 C 1.36929 * 125.65360 * 178.91751 * 5 4 2 7 7 H 1.08005 * 120.00226 * 180.02562 * 6 5 4 8 8 C 1.38815 * 120.00019 * 0.02905 * 6 5 4 9 9 N 1.31621 * 119.99805 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00152 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46943 * 59.99856 * 10 8 6 12 12 H 1.48506 * 109.47028 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46961 * 299.99619 * 10 8 6 14 14 C 1.47432 * 108.70083 * 358.94047 * 5 4 2 15 15 C 1.54911 * 104.83106 * 24.12904 * 14 5 4 16 16 H 1.09001 * 111.03735 * 81.07969 * 15 14 5 17 17 C 1.52997 * 111.00218 * 204.91573 * 15 14 5 18 18 N 1.46492 * 109.47217 * 287.19174 * 17 15 14 19 19 C 1.34778 * 120.00075 * 179.97438 * 18 17 15 20 20 O 1.21480 * 119.99871 * 0.02562 * 19 18 17 21 21 C 1.48457 * 119.99984 * 180.02562 * 19 18 17 22 22 C 1.39535 * 120.55021 * 180.02562 * 21 19 18 23 23 C 1.38755 * 118.26863 * 180.02562 * 22 21 19 24 24 N 1.32203 * 119.14423 * 359.97387 * 23 22 21 25 25 C 1.31884 * 121.03783 * 0.04999 * 24 23 22 26 26 C 1.50703 * 119.04107 * 179.97438 * 25 24 23 27 27 C 1.52989 * 117.50122 * 8.72690 * 26 25 24 28 28 C 1.52994 * 117.50028 * 300.05813 * 26 25 24 29 29 N 1.31581 * 121.91843 * 359.95019 * 25 24 23 30 30 H 1.08996 * 109.47381 * 296.86027 * 1 2 3 31 31 H 1.08998 * 109.47350 * 56.86439 * 1 2 3 32 32 H 1.09006 * 109.47228 * 176.85903 * 1 2 3 33 33 H 1.09002 * 109.88193 * 338.85673 * 4 2 1 34 34 H 1.08999 * 109.88962 * 99.87059 * 4 2 1 35 35 H 0.97001 * 120.00082 * 180.02562 * 9 8 6 36 36 H 1.08996 * 110.36803 * 265.28832 * 14 5 4 37 37 H 1.09004 * 110.36757 * 142.96615 * 14 5 4 38 38 H 1.09006 * 109.46952 * 167.19301 * 17 15 14 39 39 H 1.09004 * 109.47341 * 47.19755 * 17 15 14 40 40 H 0.96995 * 120.00277 * 0.02562 * 18 17 15 41 41 H 1.08008 * 120.86763 * 359.74561 * 22 21 19 42 42 H 1.08003 * 120.42975 * 179.97438 * 23 22 21 43 43 H 1.09002 * 115.54748 * 154.39099 * 26 25 24 44 44 H 1.09001 * 117.50301 * 359.97438 * 27 26 25 45 45 H 1.09001 * 117.50688 * 145.02100 * 27 26 25 46 46 H 1.08995 * 117.50241 * 214.97940 * 28 26 25 47 47 H 1.09002 * 117.50001 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7932 -1.2058 5 7 3.2445 -1.5519 -0.7363 6 6 4.0037 -2.4003 -1.4972 7 1 4.8457 -2.9135 -1.0568 8 6 3.6910 -2.6006 -2.8348 9 7 2.6645 -1.9755 -3.3715 10 14 4.7270 -3.7574 -3.8731 11 1 4.6847 -5.1210 -3.2866 12 1 4.1887 -3.7971 -5.2566 13 1 6.1309 -3.2740 -3.9014 14 6 3.4633 -1.2485 0.6897 15 6 2.0790 -0.7933 1.2152 16 1 1.4448 -1.6507 1.4408 17 6 2.2278 0.1123 2.4394 18 7 2.6327 -0.6917 3.5951 19 6 2.8259 -0.1022 4.7917 20 8 2.6637 1.0957 4.9119 21 6 3.2368 -0.9168 5.9628 22 6 3.4394 -0.3185 7.2070 23 6 3.8235 -1.1246 8.2691 24 7 3.9827 -2.4216 8.0683 25 6 3.7833 -2.9550 6.8787 26 6 3.9783 -4.4387 6.7003 27 6 4.2002 -5.2785 7.9597 28 6 5.3647 -5.0104 7.0030 29 7 3.4186 -2.2297 5.8433 30 1 -0.3634 0.4643 0.9167 31 1 -0.3634 0.5617 -0.8605 32 1 -0.3634 -1.0262 -0.0563 33 1 1.3130 -1.4786 -1.5749 34 1 2.3715 -0.1060 -1.9986 35 1 2.4458 -2.1157 -4.3060 36 1 4.1931 -0.4464 0.7993 37 1 3.7961 -2.1404 1.2207 38 1 1.2748 0.5975 2.6504 39 1 2.9853 0.8704 2.2407 40 1 2.7626 -1.6481 3.4991 41 1 3.3053 0.7451 7.3388 42 1 3.9902 -0.6980 9.2472 43 1 3.4136 -4.8925 5.8859 44 1 4.2055 -4.7580 8.9174 45 1 3.7819 -6.2850 7.9738 46 1 5.7120 -5.8406 6.3881 47 1 6.1360 -4.3134 7.3308 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093018859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:58 Heat of formation + Delta-G solvation = 40.777246 kcal Electronic energy + Delta-G solvation = -27594.265129 eV Core-core repulsion = 23777.754343 eV Total energy + Delta-G solvation = -3816.510786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.42027 -40.75085 -39.57523 -37.93648 -36.20857 -35.11438 -34.54604 -32.89482 -32.55045 -30.89830 -27.99371 -27.24083 -26.18406 -26.05009 -24.47026 -23.22904 -22.93356 -21.68320 -21.64477 -20.76154 -19.29280 -18.86368 -18.69735 -17.30784 -16.89103 -16.80658 -16.64125 -16.51895 -16.01811 -15.87168 -15.58224 -15.33119 -15.07347 -14.73371 -14.67526 -14.40689 -14.14986 -13.44676 -13.31472 -13.24021 -13.12255 -12.86999 -12.65677 -12.45175 -12.40266 -12.06148 -11.99530 -11.97734 -11.89633 -11.86281 -11.74155 -11.56308 -11.40222 -11.37751 -11.24750 -10.69723 -10.45055 -10.39002 -10.18644 -8.89607 -7.84568 -5.20239 -0.66085 -0.17451 1.45180 1.48492 1.54746 1.55817 1.83022 2.49309 2.51216 2.55799 2.89447 3.15278 3.32869 3.45146 3.58137 3.65997 3.77060 3.90908 3.91470 3.93268 3.94187 4.11282 4.16761 4.34160 4.46462 4.49484 4.56949 4.59762 4.72657 4.76396 4.80839 4.83061 4.95032 4.97401 5.07071 5.11783 5.11943 5.21972 5.25832 5.33020 5.35559 5.43827 5.46608 5.71772 5.72577 5.81678 6.20389 6.30486 6.83514 6.95334 7.10828 7.78107 8.42710 9.25347 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011654 B = 0.002848 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.129204 B = 9828.494746 C =11720.793893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.078 0.922 4 C 0.192 3.808 5 N -0.628 5.628 6 C -0.245 4.245 7 H 0.081 0.919 8 C -0.065 4.065 9 N -0.950 5.950 10 Si 0.978 3.022 11 H -0.275 1.275 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.137 3.863 15 C -0.091 4.091 16 H 0.087 0.913 17 C 0.141 3.859 18 N -0.695 5.695 19 C 0.568 3.432 20 O -0.554 6.554 21 C 0.117 3.883 22 C -0.176 4.176 23 C 0.164 3.836 24 N -0.511 5.511 25 C 0.339 3.661 26 C -0.125 4.125 27 C -0.137 4.137 28 C -0.150 4.150 29 N -0.508 5.508 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.016 0.984 34 H 0.001 0.999 35 H 0.247 0.753 36 H 0.018 0.982 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.416 0.584 41 H 0.175 0.825 42 H 0.221 0.779 43 H 0.132 0.868 44 H 0.106 0.894 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.184 -0.843 26.128 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.096 0.904 4 C 0.067 3.933 5 N -0.354 5.354 6 C -0.374 4.374 7 H 0.099 0.901 8 C -0.258 4.258 9 N -0.599 5.599 10 Si 0.806 3.194 11 H -0.201 1.201 12 H -0.220 1.220 13 H -0.205 1.205 14 C 0.012 3.988 15 C -0.111 4.111 16 H 0.105 0.895 17 C 0.018 3.982 18 N -0.345 5.345 19 C 0.352 3.648 20 O -0.432 6.432 21 C -0.030 4.030 22 C -0.198 4.198 23 C -0.004 4.004 24 N -0.225 5.225 25 C 0.072 3.928 26 C -0.145 4.145 27 C -0.175 4.175 28 C -0.188 4.188 29 N -0.225 5.225 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.019 0.981 35 H 0.056 0.944 36 H 0.036 0.964 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.253 0.747 41 H 0.192 0.808 42 H 0.238 0.762 43 H 0.150 0.850 44 H 0.125 0.875 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.192 -1.002 25.788 25.808 hybrid contribution 0.463 0.079 -1.351 1.430 sum 0.270 -0.922 24.437 24.456 Atomic orbital electron populations 1.21648 0.92893 1.01650 1.02320 1.22317 0.97046 0.98645 0.93916 0.90360 1.20988 0.88045 0.91973 0.92328 1.44770 1.32722 1.51185 1.06760 1.19422 1.08004 1.17914 0.92080 0.90147 1.25648 0.99827 1.02224 0.98150 1.70182 1.30288 1.46966 1.12458 0.85164 0.77980 0.78837 0.77423 1.20115 1.22021 1.20467 1.21748 0.95120 0.97339 0.84559 1.22473 0.97040 0.98347 0.93243 0.89487 1.21343 1.01060 0.93050 0.82761 1.45904 1.66942 1.13298 1.08391 1.18006 0.77603 0.86388 0.82811 1.90773 1.52882 1.14744 1.84791 1.21591 0.96334 0.90386 0.94705 1.23205 0.99205 1.04733 0.92700 1.24062 0.88162 0.87530 1.00614 1.68151 1.15492 1.14705 1.24138 1.22491 0.90064 0.96532 0.83719 1.20798 1.04198 0.85624 1.03925 1.23100 1.00441 1.00438 0.93479 1.23061 0.89918 1.02829 1.03031 1.68026 1.13641 1.06005 1.34799 0.90447 0.92573 0.93442 0.96539 0.98070 0.94419 0.96421 0.93946 0.89667 0.91446 0.74681 0.80781 0.76239 0.85039 0.87548 0.86252 0.86433 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.16 71.98 0.66 -3.09 16 2 C -0.10 -3.53 3.02 -9.61 -0.03 -3.56 16 3 H 0.08 2.64 8.04 -2.39 -0.02 2.62 16 4 C 0.19 9.48 4.97 86.73 0.43 9.91 16 5 N -0.63 -32.62 3.39 -691.98 -2.35 -34.97 16 6 C -0.25 -13.95 10.28 84.04 0.86 -13.09 16 7 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 8 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 9 N -0.95 -57.73 10.31 21.65 0.22 -57.51 16 10 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 C 0.14 5.57 6.65 86.85 0.58 6.15 16 15 C -0.09 -2.95 2.50 -9.40 -0.02 -2.97 16 16 H 0.09 2.77 8.05 -2.39 -0.02 2.75 16 17 C 0.14 3.85 5.13 86.38 0.44 4.30 16 18 N -0.70 -18.28 5.49 -465.39 -2.56 -20.83 16 19 C 0.57 15.43 7.83 86.97 0.68 16.11 16 20 O -0.55 -17.35 16.43 -3.65 -0.06 -17.41 16 21 C 0.12 2.76 6.79 41.99 0.29 3.05 16 22 C -0.18 -3.07 9.72 22.71 0.22 -2.85 16 23 C 0.16 2.23 11.31 84.76 0.96 3.19 16 24 N -0.51 -9.29 9.33 -187.89 -1.75 -11.04 16 25 C 0.34 7.19 7.31 138.79 1.01 8.20 16 26 C -0.13 -2.16 6.23 -11.54 -0.07 -2.23 16 27 C -0.14 -1.71 10.01 30.62 0.31 -1.40 16 28 C -0.15 -2.09 10.24 30.62 0.31 -1.78 16 29 N -0.51 -12.21 9.60 -177.07 -1.70 -13.91 16 30 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.47 8.06 -2.38 -0.02 1.45 16 33 H 0.02 0.91 7.00 -2.39 -0.02 0.89 16 34 H 0.00 0.06 7.50 -2.39 -0.02 0.04 16 35 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.02 0.74 7.91 -2.39 -0.02 0.72 16 37 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.09 2.14 8.10 -2.38 -0.02 2.12 16 39 H 0.07 1.96 7.96 -2.38 -0.02 1.94 16 40 H 0.42 10.61 7.86 -92.71 -0.73 9.89 16 41 H 0.17 2.51 7.74 -2.91 -0.02 2.49 16 42 H 0.22 0.91 8.06 -2.91 -0.02 0.89 16 43 H 0.13 2.21 8.14 -2.39 -0.02 2.20 16 44 H 0.11 1.41 7.54 -2.39 -0.02 1.39 16 45 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.76 388.95 1.18 -71.58 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.25 Total: 19.24 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 7.10 Total: 16.63 kcal Atomic # 7 Polarization: -130.13 SS G_CDS: -8.13 Total: -138.26 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.06 Total: -17.41 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -72.76 1.18 -71.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093018859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.358 kcal (2) G-P(sol) polarization free energy of solvation -72.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds