Wall clock time and date at job start Tue Mar 31 2020 17:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.88707 * 2 1 4 4 C 1.54916 * 111.03627 * 236.09687 * 2 1 3 5 5 N 1.47425 * 104.83078 * 204.90294 * 4 2 1 6 6 C 1.36937 * 125.64625 * 204.08169 * 5 4 2 7 7 H 1.08006 * 119.99619 * 169.99485 * 6 5 4 8 8 C 1.38806 * 120.00229 * 349.99622 * 6 5 4 9 9 N 1.31624 * 119.99978 * 350.42308 * 8 6 5 10 10 Si 1.86802 * 120.00018 * 170.41598 * 8 6 5 11 11 H 1.48504 * 109.46659 * 94.14247 * 10 8 6 12 12 H 1.48502 * 109.47095 * 214.14003 * 10 8 6 13 13 H 1.48496 * 109.47202 * 334.14216 * 10 8 6 14 14 C 1.47019 * 108.70408 * 24.12769 * 5 4 2 15 15 C 1.54325 * 107.27403 * 358.94276 * 14 5 4 16 16 H 1.08993 * 110.87592 * 96.23801 * 15 14 5 17 17 C 1.53001 * 110.72350 * 219.44846 * 15 14 5 18 18 N 1.46503 * 109.46704 * 288.51872 * 17 15 14 19 19 C 1.34780 * 120.00136 * 180.02562 * 18 17 15 20 20 O 1.21557 * 119.99416 * 0.02562 * 19 18 17 21 21 C 1.47829 * 120.00087 * 179.97438 * 19 18 17 22 22 C 1.39951 * 120.93836 * 359.72120 * 21 19 18 23 23 N 1.32152 * 118.92016 * 179.71250 * 22 21 19 24 24 C 1.31862 * 120.96608 * 0.57611 * 23 22 21 25 25 C 1.50700 * 118.95157 * 179.71917 * 24 23 22 26 26 C 1.53000 * 117.49953 * 8.72479 * 25 24 23 27 27 C 1.52997 * 117.50217 * 300.06577 * 25 24 23 28 28 N 1.31866 * 122.09815 * 359.69491 * 24 23 22 29 29 C 1.32145 * 120.97028 * 0.02562 * 28 24 23 30 30 H 1.08996 * 109.47273 * 299.29728 * 1 2 3 31 31 H 1.09004 * 109.47142 * 59.30149 * 1 2 3 32 32 H 1.09000 * 109.46799 * 179.29615 * 1 2 3 33 33 H 1.08997 * 110.36583 * 323.73851 * 4 2 1 34 34 H 1.09000 * 110.36362 * 86.05887 * 4 2 1 35 35 H 0.96999 * 119.99945 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.88197 * 239.52637 * 14 5 4 37 37 H 1.09002 * 109.88270 * 118.35609 * 14 5 4 38 38 H 1.09002 * 109.47317 * 48.51472 * 17 15 14 39 39 H 1.08993 * 109.47331 * 168.52094 * 17 15 14 40 40 H 0.97001 * 119.99855 * 359.97438 * 18 17 15 41 41 H 1.07996 * 120.53765 * 359.97438 * 22 21 19 42 42 H 1.09004 * 115.55185 * 154.39217 * 25 24 23 43 43 H 1.09004 * 117.49732 * 0.02562 * 26 25 24 44 44 H 1.08998 * 117.50284 * 145.01819 * 26 25 24 45 45 H 1.09006 * 117.50337 * 214.97884 * 27 25 24 46 46 H 1.09006 * 117.49769 * 359.97403 * 27 25 24 47 47 H 1.08001 * 120.54242 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0861 -0.8065 -1.2001 5 7 3.4281 -1.2422 -0.7726 6 6 4.4653 -1.5656 -1.6060 7 1 5.4554 -1.7174 -1.2021 8 6 4.2443 -1.6983 -2.9700 9 7 3.0149 -1.7009 -3.4403 10 14 5.6916 -1.8729 -4.1380 11 1 5.9594 -3.3130 -4.3823 12 1 5.3728 -1.2035 -5.4247 13 1 6.8929 -1.2412 -3.5357 14 6 3.4679 -1.2731 0.6968 15 6 2.0862 -0.8076 1.2025 16 1 1.4455 -1.6613 1.4231 17 6 2.2341 0.0883 2.4340 18 7 2.6460 -0.7237 3.5818 19 6 2.8386 -0.1437 4.7831 20 8 2.6701 1.0529 4.9142 21 6 3.2537 -0.9631 5.9414 22 6 3.4466 -2.3434 5.8141 23 7 3.8233 -3.0365 6.8743 24 6 4.0059 -2.4478 8.0400 25 6 4.4296 -3.2829 9.2207 26 6 4.8221 -4.7373 8.9528 27 6 3.4993 -4.4178 9.6535 28 7 3.8300 -1.1514 8.2054 29 6 3.4589 -0.3815 7.1976 30 1 -0.3633 0.5029 0.8962 31 1 -0.3634 0.5247 -0.8837 32 1 -0.3633 -1.0276 -0.0126 33 1 1.4533 -1.6706 -1.4023 34 1 2.1567 -0.1719 -2.0835 35 1 2.8605 -1.7940 -4.3933 36 1 4.2426 -0.5982 1.0609 37 1 3.6658 -2.2882 1.0410 38 1 2.9877 0.8515 2.2397 39 1 1.2795 0.5672 2.6516 40 1 2.7793 -1.6788 3.4773 41 1 3.2942 -2.8335 4.8639 42 1 4.9720 -2.7511 10.0024 43 1 4.7743 -5.0898 7.9225 44 1 5.6225 -5.1623 9.5584 45 1 3.4298 -4.6329 10.7199 46 1 2.5804 -4.5602 9.0845 47 1 3.3172 0.6796 7.3408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093027906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:04 Heat of formation + Delta-G solvation = 58.234778 kcal Electronic energy + Delta-G solvation = -27329.133393 eV Core-core repulsion = 23513.379622 eV Total energy + Delta-G solvation = -3815.753771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.66067 -39.68866 -38.08816 -37.35323 -34.98655 -34.11814 -33.07394 -32.29481 -30.79514 -29.39440 -26.54569 -25.85177 -25.11730 -24.82818 -22.96129 -22.75160 -22.01339 -20.92686 -19.98713 -19.50227 -18.20387 -18.14056 -17.11241 -16.75963 -15.93805 -15.68411 -15.55582 -15.14550 -14.81820 -14.58723 -14.46520 -14.13966 -13.88370 -13.72610 -13.20755 -12.81920 -12.73217 -12.64455 -12.00895 -11.94692 -11.82373 -11.64911 -11.59918 -11.32931 -11.24774 -11.22195 -10.90363 -10.86830 -10.82117 -10.37452 -10.16289 -10.06426 -9.97709 -9.80971 -9.74090 -9.66057 -9.57098 -9.12508 -8.61757 -6.84196 -5.78602 -3.11254 0.04128 0.65639 2.54167 2.91018 3.21461 3.29480 3.36946 3.43177 3.45094 3.55517 3.77949 4.07295 4.36848 4.43208 4.45577 4.55533 4.59228 4.61061 4.90429 5.02849 5.14315 5.21139 5.25030 5.35019 5.41156 5.42097 5.52944 5.66043 5.67140 5.78695 5.80878 5.87632 5.97815 6.01082 6.11829 6.18975 6.27682 6.43415 6.48355 6.52146 6.56139 6.69858 6.87328 7.28769 7.47434 7.55493 7.62142 7.75049 7.96565 8.22265 9.15723 9.77583 10.44716 11.34403 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.002368 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.305632 B =11819.872875 C =12971.608009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 H 0.072 0.928 4 C 0.180 3.820 5 N -0.603 5.603 6 C -0.230 4.230 7 H 0.075 0.925 8 C -0.006 4.006 9 N -0.917 5.917 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.140 3.860 15 C -0.110 4.110 16 H 0.079 0.921 17 C 0.132 3.868 18 N -0.716 5.716 19 C 0.567 3.433 20 O -0.533 6.533 21 C -0.247 4.247 22 C 0.190 3.810 23 N -0.518 5.518 24 C 0.366 3.634 25 C -0.109 4.109 26 C -0.151 4.151 27 C -0.153 4.153 28 N -0.517 5.517 29 C 0.212 3.788 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.253 0.747 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.400 0.600 41 H 0.174 0.826 42 H 0.132 0.868 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -2.555 23.023 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 H 0.090 0.910 4 C 0.055 3.945 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.093 0.907 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.014 3.986 15 C -0.129 4.129 16 H 0.097 0.903 17 C 0.009 3.991 18 N -0.367 5.367 19 C 0.352 3.648 20 O -0.411 6.411 21 C -0.254 4.254 22 C 0.022 3.978 23 N -0.231 5.231 24 C 0.101 3.899 25 C -0.129 4.129 26 C -0.189 4.189 27 C -0.191 4.191 28 N -0.230 5.230 29 C 0.045 3.955 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.235 0.765 41 H 0.191 0.809 42 H 0.150 0.850 43 H 0.131 0.869 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.116 0.884 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.183 -2.266 23.635 23.843 hybrid contribution 0.541 -0.043 -1.582 1.673 sum -1.642 -2.309 22.052 22.234 Atomic orbital electron populations 1.21659 0.95319 1.01487 1.00814 1.22593 0.94748 0.99453 0.96432 0.90972 1.21455 0.84933 0.95282 0.92814 1.44455 1.10854 1.78622 0.98996 1.19001 0.87815 1.40992 0.88054 0.90712 1.24819 0.96572 1.01759 0.97173 1.69952 1.17844 1.55943 1.12697 0.86141 0.81585 0.77617 0.80639 1.21599 1.21574 1.20607 1.21355 0.93223 0.97179 0.86820 1.22504 0.98797 0.98150 0.93498 0.90294 1.21547 1.00425 0.93676 0.83411 1.45988 1.69052 1.12409 1.09213 1.17723 0.77671 0.87068 0.82342 1.90799 1.51486 1.14422 1.84396 1.21835 1.09177 0.96662 0.97738 1.23512 0.87052 0.89736 0.97492 1.68156 1.14683 1.40671 0.99607 1.22411 0.88338 0.87687 0.91433 1.20718 1.06388 0.89816 0.96012 1.23077 0.98166 0.94371 1.03281 1.23017 0.95133 0.99447 1.01518 1.68288 1.14821 1.06144 1.33772 1.23518 0.85194 1.00832 0.85941 0.93576 0.92615 0.92826 0.95385 0.91312 0.93677 0.95792 0.96345 0.90842 0.91177 0.76486 0.80870 0.85024 0.86949 0.87939 0.87707 0.88427 0.79974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.29 37.16 0.35 -1.60 16 2 C -0.11 -1.93 3.09 -88.46 -0.27 -2.21 16 3 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 4 C 0.18 4.15 4.89 -2.53 -0.01 4.14 16 5 N -0.60 -14.91 3.39 -170.07 -0.58 -15.48 16 6 C -0.23 -6.31 10.24 -15.06 -0.15 -6.47 16 7 H 0.08 2.00 7.85 -52.48 -0.41 1.58 16 8 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 9 N -0.92 -26.47 10.68 55.49 0.59 -25.88 16 10 Si 0.91 21.82 29.56 -169.99 -5.03 16.79 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.14 2.71 6.75 -3.07 -0.02 2.69 16 15 C -0.11 -1.69 2.43 -88.78 -0.22 -1.91 16 16 H 0.08 1.13 8.04 -51.93 -0.42 0.72 16 17 C 0.13 1.78 5.02 -4.04 -0.02 1.76 16 18 N -0.72 -8.27 5.43 -61.25 -0.33 -8.60 16 19 C 0.57 7.13 7.79 -12.34 -0.10 7.03 16 20 O -0.53 -8.39 16.45 5.32 0.09 -8.30 16 21 C -0.25 -2.65 5.91 -104.69 -0.62 -3.27 16 22 C 0.19 1.82 10.81 -16.77 -0.18 1.64 16 23 N -0.52 -5.43 9.32 -10.40 -0.10 -5.52 16 24 C 0.37 3.87 7.31 -157.07 -1.15 2.72 16 25 C -0.11 -0.87 6.23 -91.77 -0.57 -1.44 16 26 C -0.15 -1.00 10.01 -26.70 -0.27 -1.26 16 27 C -0.15 -0.98 10.24 -26.70 -0.27 -1.25 16 28 N -0.52 -5.79 10.31 -10.40 -0.11 -5.90 16 29 C 0.21 2.29 10.88 -16.78 -0.18 2.11 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.77 8.13 -51.93 -0.42 0.34 16 33 H 0.03 0.70 7.96 -51.93 -0.41 0.29 16 34 H 0.07 1.79 6.94 -51.93 -0.36 1.43 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.02 0.47 7.68 -51.93 -0.40 0.07 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.40 3.76 6.61 -40.82 -0.27 3.49 16 41 H 0.17 1.20 6.54 -52.49 -0.34 0.85 16 42 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.11 0.86 7.53 -51.93 -0.39 0.47 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.18 1.74 7.74 -52.49 -0.41 1.33 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -32.66 387.18 -10.59 -43.25 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.18 Total: 1.41 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -3.78 Total: 2.40 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.52 Total: -61.39 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.66 -10.59 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093027906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.483 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds