Wall clock time and date at job start Tue Mar 31 2020 17:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.88707 * 2 1 4 4 C 1.54916 * 111.03627 * 236.09687 * 2 1 3 5 5 N 1.47425 * 104.83078 * 204.90294 * 4 2 1 6 6 C 1.36937 * 125.64625 * 204.08169 * 5 4 2 7 7 H 1.08006 * 119.99619 * 169.99485 * 6 5 4 8 8 C 1.38806 * 120.00229 * 349.99622 * 6 5 4 9 9 N 1.31624 * 119.99978 * 350.42308 * 8 6 5 10 10 Si 1.86802 * 120.00018 * 170.41598 * 8 6 5 11 11 H 1.48504 * 109.46659 * 94.14247 * 10 8 6 12 12 H 1.48502 * 109.47095 * 214.14003 * 10 8 6 13 13 H 1.48496 * 109.47202 * 334.14216 * 10 8 6 14 14 C 1.47019 * 108.70408 * 24.12769 * 5 4 2 15 15 C 1.54325 * 107.27403 * 358.94276 * 14 5 4 16 16 H 1.08993 * 110.87592 * 96.23801 * 15 14 5 17 17 C 1.53001 * 110.72350 * 219.44846 * 15 14 5 18 18 N 1.46503 * 109.46704 * 288.51872 * 17 15 14 19 19 C 1.34780 * 120.00136 * 180.02562 * 18 17 15 20 20 O 1.21557 * 119.99416 * 0.02562 * 19 18 17 21 21 C 1.47829 * 120.00087 * 179.97438 * 19 18 17 22 22 C 1.39951 * 120.93836 * 359.72120 * 21 19 18 23 23 N 1.32152 * 118.92016 * 179.71250 * 22 21 19 24 24 C 1.31862 * 120.96608 * 0.57611 * 23 22 21 25 25 C 1.50700 * 118.95157 * 179.71917 * 24 23 22 26 26 C 1.53000 * 117.49953 * 8.72479 * 25 24 23 27 27 C 1.52997 * 117.50217 * 300.06577 * 25 24 23 28 28 N 1.31866 * 122.09815 * 359.69491 * 24 23 22 29 29 C 1.32145 * 120.97028 * 0.02562 * 28 24 23 30 30 H 1.08996 * 109.47273 * 299.29728 * 1 2 3 31 31 H 1.09004 * 109.47142 * 59.30149 * 1 2 3 32 32 H 1.09000 * 109.46799 * 179.29615 * 1 2 3 33 33 H 1.08997 * 110.36583 * 323.73851 * 4 2 1 34 34 H 1.09000 * 110.36362 * 86.05887 * 4 2 1 35 35 H 0.96999 * 119.99945 * 180.02562 * 9 8 6 36 36 H 1.09006 * 109.88197 * 239.52637 * 14 5 4 37 37 H 1.09002 * 109.88270 * 118.35609 * 14 5 4 38 38 H 1.09002 * 109.47317 * 48.51472 * 17 15 14 39 39 H 1.08993 * 109.47331 * 168.52094 * 17 15 14 40 40 H 0.97001 * 119.99855 * 359.97438 * 18 17 15 41 41 H 1.07996 * 120.53765 * 359.97438 * 22 21 19 42 42 H 1.09004 * 115.55185 * 154.39217 * 25 24 23 43 43 H 1.09004 * 117.49732 * 0.02562 * 26 25 24 44 44 H 1.08998 * 117.50284 * 145.01819 * 26 25 24 45 45 H 1.09006 * 117.50337 * 214.97884 * 27 25 24 46 46 H 1.09006 * 117.49769 * 359.97403 * 27 25 24 47 47 H 1.08001 * 120.54242 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0861 -0.8065 -1.2001 5 7 3.4281 -1.2422 -0.7726 6 6 4.4653 -1.5656 -1.6060 7 1 5.4554 -1.7174 -1.2021 8 6 4.2443 -1.6983 -2.9700 9 7 3.0149 -1.7009 -3.4403 10 14 5.6916 -1.8729 -4.1380 11 1 5.9594 -3.3130 -4.3823 12 1 5.3728 -1.2035 -5.4247 13 1 6.8929 -1.2412 -3.5357 14 6 3.4679 -1.2731 0.6968 15 6 2.0862 -0.8076 1.2025 16 1 1.4455 -1.6613 1.4231 17 6 2.2341 0.0883 2.4340 18 7 2.6460 -0.7237 3.5818 19 6 2.8386 -0.1437 4.7831 20 8 2.6701 1.0529 4.9142 21 6 3.2537 -0.9631 5.9414 22 6 3.4466 -2.3434 5.8141 23 7 3.8233 -3.0365 6.8743 24 6 4.0059 -2.4478 8.0400 25 6 4.4296 -3.2829 9.2207 26 6 4.8221 -4.7373 8.9528 27 6 3.4993 -4.4178 9.6535 28 7 3.8300 -1.1514 8.2054 29 6 3.4589 -0.3815 7.1976 30 1 -0.3633 0.5029 0.8962 31 1 -0.3634 0.5247 -0.8837 32 1 -0.3633 -1.0276 -0.0126 33 1 1.4533 -1.6706 -1.4023 34 1 2.1567 -0.1719 -2.0835 35 1 2.8605 -1.7940 -4.3933 36 1 4.2426 -0.5982 1.0609 37 1 3.6658 -2.2882 1.0410 38 1 2.9877 0.8515 2.2397 39 1 1.2795 0.5672 2.6516 40 1 2.7793 -1.6788 3.4773 41 1 3.2942 -2.8335 4.8639 42 1 4.9720 -2.7511 10.0024 43 1 4.7743 -5.0898 7.9225 44 1 5.6225 -5.1623 9.5584 45 1 3.4298 -4.6329 10.7199 46 1 2.5804 -4.5602 9.0845 47 1 3.3172 0.6796 7.3408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093027906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:02 Heat of formation + Delta-G solvation = 38.081187 kcal Electronic energy + Delta-G solvation = -27330.007319 eV Core-core repulsion = 23513.379622 eV Total energy + Delta-G solvation = -3816.627696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.45832 -40.73717 -39.53853 -37.95295 -36.21379 -35.08422 -34.61391 -33.19513 -32.54336 -30.74759 -27.95203 -27.23750 -26.29212 -25.72800 -24.44422 -23.23821 -22.86808 -21.90799 -21.53476 -20.85669 -19.21526 -18.94615 -18.71186 -17.83072 -17.07505 -16.75702 -16.64335 -16.29220 -15.97308 -15.72172 -15.53413 -15.38143 -15.04769 -14.67172 -14.60548 -14.35262 -14.03534 -13.47919 -13.39755 -13.32819 -13.11224 -12.76731 -12.73240 -12.65559 -12.45380 -12.35989 -12.08434 -11.97169 -11.92360 -11.85432 -11.63108 -11.44404 -11.40069 -11.38167 -11.02458 -10.66515 -10.52639 -10.44603 -10.13090 -8.84312 -7.88486 -5.22288 -0.76697 -0.12327 1.45153 1.46485 1.55828 1.63308 1.93768 2.48424 2.49004 2.60931 2.83569 3.13153 3.29844 3.30602 3.53845 3.61261 3.74088 3.84961 3.85444 3.88958 3.93953 3.97756 4.07809 4.31136 4.38616 4.51181 4.61459 4.63264 4.75772 4.79796 4.81250 4.87026 4.92300 4.98631 5.08158 5.09472 5.14510 5.17891 5.30203 5.31824 5.39130 5.44680 5.49300 5.68190 5.70573 5.79860 6.21453 6.35521 6.84027 7.01139 7.09258 7.77854 8.43527 9.23208 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.002368 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.305632 B =11819.872875 C =12971.608009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 H 0.071 0.929 4 C 0.185 3.815 5 N -0.628 5.628 6 C -0.243 4.243 7 H 0.077 0.923 8 C -0.063 4.063 9 N -0.946 5.946 10 Si 0.974 3.026 11 H -0.285 1.285 12 H -0.294 1.294 13 H -0.271 1.271 14 C 0.135 3.865 15 C -0.089 4.089 16 H 0.098 0.902 17 C 0.144 3.856 18 N -0.707 5.707 19 C 0.573 3.427 20 O -0.567 6.567 21 C -0.254 4.254 22 C 0.196 3.804 23 N -0.527 5.527 24 C 0.359 3.641 25 C -0.128 4.128 26 C -0.145 4.145 27 C -0.143 4.143 28 N -0.532 5.532 29 C 0.208 3.792 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.002 0.998 34 H 0.027 0.973 35 H 0.248 0.752 36 H 0.023 0.977 37 H 0.028 0.972 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.412 0.588 41 H 0.200 0.800 42 H 0.140 0.860 43 H 0.100 0.900 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.088 0.912 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 -3.322 25.018 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.121 4.121 3 H 0.089 0.911 4 C 0.060 3.940 5 N -0.354 5.354 6 C -0.372 4.372 7 H 0.094 0.906 8 C -0.257 4.257 9 N -0.595 5.595 10 Si 0.802 3.198 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.196 1.196 14 C 0.010 3.990 15 C -0.108 4.108 16 H 0.116 0.884 17 C 0.021 3.979 18 N -0.358 5.358 19 C 0.360 3.640 20 O -0.448 6.448 21 C -0.261 4.261 22 C 0.028 3.972 23 N -0.241 5.241 24 C 0.095 3.905 25 C -0.147 4.147 26 C -0.182 4.182 27 C -0.181 4.181 28 N -0.245 5.245 29 C 0.041 3.959 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.020 0.980 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.250 0.750 41 H 0.217 0.783 42 H 0.158 0.842 43 H 0.118 0.882 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.107 0.893 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.134 -3.057 25.665 25.934 hybrid contribution 0.564 0.159 -2.150 2.229 sum -1.570 -2.898 23.514 23.744 Atomic orbital electron populations 1.21617 0.92684 1.02058 1.02242 1.22435 0.96793 0.98489 0.94376 0.91101 1.21249 0.84484 0.94237 0.93996 1.44784 1.10765 1.78613 1.01251 1.19360 0.88825 1.40112 0.88911 0.90561 1.25617 0.98958 1.02359 0.98743 1.70147 1.19618 1.57270 1.12425 0.85145 0.78927 0.77478 0.78258 1.21218 1.22001 1.19610 1.21549 0.95678 0.97756 0.83972 1.22338 0.96434 0.98672 0.93392 0.88367 1.21296 1.00731 0.92930 0.82965 1.45826 1.68610 1.12913 1.08463 1.17853 0.76861 0.86648 0.82685 1.90786 1.53115 1.15935 1.84924 1.21643 1.10461 0.96998 0.97010 1.23928 0.85677 0.89295 0.98281 1.68261 1.15273 1.40715 0.99845 1.22958 0.87517 0.87816 0.92252 1.20903 1.07810 0.90320 0.95717 1.23127 0.98978 0.93062 1.03052 1.23095 0.94541 0.97798 1.02644 1.68350 1.15638 1.06602 1.33942 1.23693 0.84811 1.01269 0.86104 0.90514 0.92881 0.92650 0.98039 0.95434 0.94305 0.95854 0.95400 0.92256 0.89885 0.75049 0.78319 0.84193 0.88154 0.85950 0.85562 0.89340 0.79417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.29 71.98 0.67 -2.76 16 2 C -0.10 -3.38 3.09 -9.40 -0.03 -3.41 16 3 H 0.07 2.40 8.05 -2.39 -0.02 2.39 16 4 C 0.19 8.75 4.89 86.86 0.42 9.18 16 5 N -0.63 -31.37 3.39 -691.98 -2.35 -33.72 16 6 C -0.24 -13.49 10.24 84.03 0.86 -12.63 16 7 H 0.08 4.09 7.85 -2.91 -0.02 4.07 16 8 C -0.06 -3.58 5.40 84.86 0.46 -3.12 16 9 N -0.95 -56.34 10.68 21.65 0.23 -56.11 16 10 Si 0.97 45.51 29.56 68.60 2.03 47.54 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 C 0.14 5.08 6.75 86.73 0.59 5.67 16 15 C -0.09 -2.55 2.43 -9.60 -0.02 -2.58 16 16 H 0.10 2.50 8.04 -2.39 -0.02 2.48 16 17 C 0.14 3.52 5.02 86.38 0.43 3.96 16 18 N -0.71 -14.59 5.43 -465.98 -2.53 -17.12 16 19 C 0.57 13.44 7.79 86.78 0.68 14.12 16 20 O -0.57 -17.20 16.45 -3.89 -0.06 -17.26 16 21 C -0.25 -5.09 5.91 -19.91 -0.12 -5.21 16 22 C 0.20 3.37 10.81 85.06 0.92 4.29 16 23 N -0.53 -10.25 9.32 -186.80 -1.74 -12.00 16 24 C 0.36 7.16 7.31 138.71 1.01 8.17 16 25 C -0.13 -1.83 6.23 -11.54 -0.07 -1.91 16 26 C -0.14 -1.62 10.01 30.62 0.31 -1.31 16 27 C -0.14 -1.53 10.24 30.62 0.31 -1.22 16 28 N -0.53 -11.46 10.31 -186.80 -1.93 -13.39 16 29 C 0.21 4.33 10.88 85.06 0.93 5.25 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.05 1.47 8.13 -2.39 -0.02 1.45 16 33 H 0.00 0.08 7.96 -2.39 -0.02 0.06 16 34 H 0.03 1.50 6.94 -2.39 -0.02 1.48 16 35 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.02 0.89 7.68 -2.38 -0.02 0.87 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.67 7.93 -2.39 -0.02 1.65 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.41 6.51 6.61 -92.71 -0.61 5.89 16 41 H 0.20 2.18 6.54 -2.91 -0.02 2.16 16 42 H 0.14 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.10 1.40 7.53 -2.38 -0.02 1.38 16 44 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.19 3.52 7.74 -2.91 -0.02 3.50 16 Total: -1.00 -72.50 387.18 1.36 -71.13 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.37 Total: 14.42 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 7.34 Total: 16.50 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -8.31 Total: -132.33 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.06 Total: -17.26 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -72.50 1.36 -71.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093027906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.216 kcal (2) G-P(sol) polarization free energy of solvation -72.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds