Wall clock time and date at job start Tue Mar 31 2020 15:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46919 * 2 1 4 4 H 1.09005 * 109.47269 * 307.42679 * 3 2 1 5 5 C 1.53003 * 109.47121 * 67.42242 * 3 2 1 6 6 C 1.53003 * 109.47349 * 184.82665 * 5 3 2 7 7 F 1.39899 * 109.47078 * 292.93955 * 6 5 3 8 8 F 1.39891 * 109.47109 * 172.93695 * 6 5 3 9 9 C 1.50698 * 109.47241 * 187.42278 * 3 2 1 10 10 O 1.21281 * 120.00304 * 272.54963 * 9 3 2 11 11 N 1.34777 * 119.99753 * 92.54810 * 9 3 2 12 12 C 1.47219 * 126.70344 * 359.69057 * 11 9 3 13 13 C 1.54055 * 106.23312 * 148.68592 * 12 11 9 14 14 H 1.08999 * 111.72249 * 140.80467 * 13 12 11 15 15 C 1.53788 * 109.51979 * 266.26425 * 13 12 11 16 16 N 1.47213 * 106.37299 * 131.52962 * 15 13 12 17 17 C 1.36945 * 126.69999 * 148.75753 * 16 15 13 18 18 H 1.08000 * 119.99343 * 338.04836 * 17 16 15 19 19 C 1.38810 * 120.00188 * 158.05988 * 17 16 15 20 20 N 1.31616 * 120.00030 * 169.14425 * 19 17 16 21 21 Si 1.86799 * 119.99979 * 349.13504 * 19 17 16 22 22 H 1.48497 * 109.46967 * 84.20001 * 21 19 17 23 23 H 1.48497 * 109.47318 * 204.20409 * 21 19 17 24 24 H 1.48508 * 109.47215 * 324.20310 * 21 19 17 25 25 C 1.47215 * 106.59817 * 328.72644 * 16 15 13 26 26 C 1.53780 * 106.37577 * 31.27896 * 25 16 15 27 27 C 1.52994 * 112.60457 * 103.50269 * 26 25 16 28 28 C 1.47218 * 126.70146 * 179.97438 * 11 9 3 29 29 H 1.08995 * 109.47519 * 300.65586 * 1 2 3 30 30 H 1.09003 * 109.47021 * 60.66222 * 1 2 3 31 31 H 1.08998 * 109.46667 * 180.65452 * 1 2 3 32 32 H 1.08992 * 109.47848 * 240.00289 * 2 1 3 33 33 H 1.09004 * 109.47217 * 119.99688 * 2 1 3 34 34 H 1.09007 * 109.46813 * 64.83260 * 5 3 2 35 35 H 1.08994 * 109.47376 * 304.83355 * 5 3 2 36 36 H 1.09005 * 109.46577 * 52.93857 * 6 5 3 37 37 H 1.08998 * 110.06976 * 267.98716 * 12 11 9 38 38 H 1.09003 * 110.07257 * 29.53238 * 12 11 9 39 39 H 1.08997 * 110.07446 * 250.75982 * 15 13 12 40 40 H 1.09000 * 110.07341 * 12.24517 * 15 13 12 41 41 H 0.96998 * 119.99974 * 179.97438 * 20 19 17 42 42 H 1.08992 * 110.07635 * 272.04461 * 25 16 15 43 43 H 1.09007 * 110.06913 * 150.50456 * 25 16 15 44 44 H 1.09003 * 109.47654 * 182.60002 * 27 26 25 45 45 H 1.08996 * 109.47705 * 302.60978 * 27 26 25 46 46 H 1.09005 * 109.46859 * 62.60622 * 27 26 25 47 47 H 1.08999 * 110.07590 * 330.47276 * 28 11 9 48 48 H 1.09002 * 110.07024 * 91.95542 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5722 1.9933 -0.8161 5 6 1.6877 2.1080 1.3320 6 6 2.0898 3.5835 1.2870 7 9 3.4838 3.6854 1.2265 8 9 1.6245 4.2289 2.4377 9 6 3.5357 1.4466 -0.1836 10 8 4.2653 1.3564 0.7810 11 7 4.0626 1.5505 -1.4197 12 6 3.3202 1.6608 -2.6862 13 6 4.1966 2.5099 -3.6265 14 1 4.1695 2.1362 -4.6501 15 6 3.7783 3.9863 -3.5251 16 7 5.0191 4.7578 -3.3452 17 6 5.2594 6.0342 -3.7793 18 1 4.6777 6.4472 -4.5901 19 6 6.2507 6.7970 -3.1773 20 7 6.6292 7.9332 -3.7230 21 14 7.0472 6.2108 -1.5925 22 1 8.1450 5.2631 -1.9114 23 1 7.5977 7.3761 -0.8548 24 1 6.0318 5.5273 -0.7515 25 6 5.9508 3.8895 -2.6069 26 6 5.6218 2.4464 -3.0243 27 6 6.6371 1.8751 -4.0160 28 6 5.4929 1.5699 -1.7677 29 1 -0.3634 0.5239 0.8840 30 1 -0.3633 0.5035 -0.8959 31 1 -0.3632 -1.0276 0.0117 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2238 1.6098 2.1399 35 1 0.6146 2.0289 1.5051 36 1 1.6526 4.0525 0.4054 37 1 3.1596 0.6708 -3.1130 38 1 2.3639 2.1557 -2.5174 39 1 3.2744 4.2961 -4.4407 40 1 3.1195 4.1305 -2.6688 41 1 7.3217 8.4664 -3.3022 42 1 5.8049 4.0111 -1.5337 43 1 6.9794 4.1312 -2.8749 44 1 6.3311 0.8716 -4.3119 45 1 6.6843 2.5151 -4.8970 46 1 7.6195 1.8315 -3.5457 47 1 6.0710 2.0007 -0.9501 48 1 5.8403 0.5586 -1.9788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101264344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:41 Heat of formation + Delta-G solvation = -117.044910 kcal Electronic energy + Delta-G solvation = -31319.171345 eV Core-core repulsion = 27045.127690 eV Total energy + Delta-G solvation = -4274.043655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.80671 -46.79985 -40.66557 -38.90037 -35.88904 -35.20001 -32.72148 -31.63727 -31.24008 -30.30592 -27.78100 -26.35061 -25.79593 -25.43120 -23.08322 -22.64174 -21.53821 -20.65713 -19.26576 -18.89428 -17.73726 -17.19080 -16.99074 -16.71303 -16.45359 -15.86586 -15.35544 -15.05625 -14.57116 -14.37949 -14.12733 -13.87866 -13.70558 -13.57298 -13.33180 -13.15022 -13.06159 -12.88833 -12.67557 -12.51870 -12.46982 -12.28341 -12.19413 -11.99899 -11.69869 -11.56696 -11.39728 -11.31858 -11.11948 -10.98131 -10.87397 -10.72529 -10.63583 -10.26063 -9.95403 -9.80454 -9.63157 -9.34766 -8.82011 -8.55086 -7.03533 -5.92978 -3.31343 2.66893 2.98391 3.34876 3.51033 3.53669 3.71864 4.15592 4.21682 4.31480 4.52784 4.56606 4.58494 4.71669 4.75177 4.78324 4.92852 5.04184 5.06060 5.15422 5.19864 5.23962 5.37939 5.38931 5.42864 5.47361 5.48880 5.62510 5.64724 5.72315 5.75468 5.79933 5.82651 5.87004 5.90528 5.95548 6.18539 6.23767 6.35372 6.39135 6.46973 6.64170 6.71413 6.74126 7.61887 7.69750 8.23568 8.31963 8.80116 9.67291 10.18803 11.23374 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.005108 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.662315 B = 5479.994934 C = 6557.559868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.108 4.108 3 C -0.105 4.105 4 H 0.097 0.903 5 C -0.158 4.158 6 C 0.256 3.744 7 F -0.189 7.189 8 F -0.209 7.209 9 C 0.533 3.467 10 O -0.529 6.529 11 N -0.611 5.611 12 C 0.107 3.893 13 C -0.108 4.108 14 H 0.096 0.904 15 C 0.143 3.857 16 N -0.603 5.603 17 C -0.240 4.240 18 H 0.094 0.906 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.887 3.113 22 H -0.287 1.287 23 H -0.303 1.303 24 H -0.265 1.265 25 C 0.112 3.888 26 C -0.084 4.084 27 C -0.124 4.124 28 C 0.118 3.882 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.021 0.979 41 H 0.264 0.736 42 H 0.038 0.962 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.609 -18.408 4.024 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.126 4.126 4 H 0.115 0.885 5 C -0.196 4.196 6 C 0.203 3.797 7 F -0.170 7.170 8 F -0.190 7.190 9 C 0.321 3.679 10 O -0.405 6.405 11 N -0.344 5.344 12 C -0.016 4.016 13 C -0.128 4.128 14 H 0.114 0.886 15 C 0.017 3.983 16 N -0.328 5.328 17 C -0.367 4.367 18 H 0.111 0.889 19 C -0.175 4.175 20 N -0.562 5.562 21 Si 0.718 3.282 22 H -0.214 1.214 23 H -0.232 1.232 24 H -0.191 1.191 25 C -0.014 4.014 26 C -0.086 4.086 27 C -0.182 4.182 28 C -0.005 4.005 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.112 -18.161 4.652 22.320 hybrid contribution 0.644 -0.023 0.886 1.095 sum -11.468 -18.185 5.538 22.200 Atomic orbital electron populations 1.21845 0.94690 1.02238 1.02312 1.21387 0.96515 0.93316 1.03347 1.21331 0.93214 0.99400 0.98679 0.88470 1.22660 1.04166 0.93459 0.99296 1.21943 0.77301 0.93787 0.86710 1.93114 1.30380 1.96920 1.96589 1.92964 1.88492 1.83582 1.53983 1.20019 0.90122 0.76368 0.81404 1.90713 1.61943 1.49413 1.38459 1.48429 1.08052 1.72281 1.05640 1.22261 0.95855 0.99573 0.83903 1.22931 0.93976 0.97376 0.98543 0.88624 1.21362 0.89936 0.88375 0.98659 1.44737 1.09081 1.12668 1.66277 1.18659 1.18737 0.86050 1.13227 0.88884 1.25023 0.98897 0.95391 0.98233 1.69720 1.31916 1.14363 1.40199 0.87029 0.79501 0.76476 0.85174 1.21417 1.23164 1.19070 1.22092 0.95665 0.87657 0.95983 1.22111 0.95456 0.96847 0.94204 1.21638 0.97766 0.99907 0.98854 1.22087 0.81978 0.99148 0.97284 0.92226 0.92214 0.92152 0.91042 0.90877 0.88091 0.87837 0.87721 0.91475 0.90479 0.92978 0.96163 0.92651 0.94489 0.91978 0.92846 0.91350 0.92584 0.90240 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.72 37.16 0.36 -0.51 16 2 C -0.11 -0.84 5.37 -26.73 -0.14 -0.98 16 3 C -0.10 -1.06 1.83 -91.77 -0.17 -1.23 16 4 H 0.10 0.83 6.38 -51.93 -0.33 0.50 16 5 C -0.16 -1.63 4.68 -26.73 -0.13 -1.76 16 6 C 0.26 3.42 5.23 37.16 0.19 3.62 16 7 F -0.19 -3.53 14.46 2.25 0.03 -3.50 16 8 F -0.21 -2.98 17.34 2.25 0.04 -2.94 16 9 C 0.53 7.83 5.55 -10.99 -0.06 7.77 16 10 O -0.53 -9.84 14.94 5.56 0.08 -9.76 16 11 N -0.61 -8.68 3.32 -171.42 -0.57 -9.25 16 12 C 0.11 1.22 6.19 -3.10 -0.02 1.20 16 13 C -0.11 -1.53 3.68 -88.68 -0.33 -1.86 16 14 H 0.10 1.18 7.88 -51.93 -0.41 0.77 16 15 C 0.14 2.61 6.72 -3.24 -0.02 2.59 16 16 N -0.60 -14.24 3.21 -171.13 -0.55 -14.79 16 17 C -0.24 -6.74 10.73 -15.06 -0.16 -6.90 16 18 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 19 C 0.02 0.67 5.50 -17.43 -0.10 0.58 16 20 N -0.92 -28.60 13.97 55.49 0.78 -27.82 16 21 Si 0.89 23.62 24.37 -169.99 -4.14 19.47 16 22 H -0.29 -7.34 6.49 56.52 0.37 -6.98 16 23 H -0.30 -8.23 7.11 56.52 0.40 -7.82 16 24 H -0.27 -7.14 5.83 56.52 0.33 -6.81 16 25 C 0.11 2.43 3.83 -3.25 -0.01 2.42 16 26 C -0.08 -1.36 1.09 -152.74 -0.17 -1.52 16 27 C -0.12 -1.72 8.49 37.15 0.32 -1.41 16 28 C 0.12 1.81 5.95 -3.26 -0.02 1.79 16 29 H 0.06 0.32 6.52 -51.93 -0.34 -0.02 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.19 7.68 -51.92 -0.40 0.80 16 35 H 0.10 0.75 6.44 -51.93 -0.33 0.41 16 36 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.76 5.90 -51.93 -0.31 0.45 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.38 7.41 -51.93 -0.38 -0.01 16 41 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 42 H 0.04 0.90 4.98 -51.93 -0.26 0.64 16 43 H 0.06 1.46 5.36 -51.93 -0.28 1.19 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.08 1.43 7.29 -51.93 -0.38 1.05 16 48 H 0.06 0.85 7.87 -51.93 -0.41 0.44 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -35.24 367.06 -6.97 -42.21 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.72 Total: -2.94 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -0.45 Total: 3.79 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.34 Total: -51.87 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.07 Total: -6.44 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -4.14 Total: 19.47 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.24 -6.97 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101264344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.838 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds