Wall clock time and date at job start Tue Mar 31 2020 15:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46919 * 2 1 4 4 H 1.09005 * 109.47269 * 307.42679 * 3 2 1 5 5 C 1.53003 * 109.47121 * 67.42242 * 3 2 1 6 6 C 1.53003 * 109.47349 * 184.82665 * 5 3 2 7 7 F 1.39899 * 109.47078 * 292.93955 * 6 5 3 8 8 F 1.39891 * 109.47109 * 172.93695 * 6 5 3 9 9 C 1.50698 * 109.47241 * 187.42278 * 3 2 1 10 10 O 1.21281 * 120.00304 * 272.54963 * 9 3 2 11 11 N 1.34777 * 119.99753 * 92.54810 * 9 3 2 12 12 C 1.47219 * 126.70344 * 359.69057 * 11 9 3 13 13 C 1.54055 * 106.23312 * 148.68592 * 12 11 9 14 14 H 1.08999 * 111.72249 * 140.80467 * 13 12 11 15 15 C 1.53788 * 109.51979 * 266.26425 * 13 12 11 16 16 N 1.47213 * 106.37299 * 131.52962 * 15 13 12 17 17 C 1.36945 * 126.69999 * 148.75753 * 16 15 13 18 18 H 1.08000 * 119.99343 * 338.04836 * 17 16 15 19 19 C 1.38810 * 120.00188 * 158.05988 * 17 16 15 20 20 N 1.31616 * 120.00030 * 169.14425 * 19 17 16 21 21 Si 1.86799 * 119.99979 * 349.13504 * 19 17 16 22 22 H 1.48497 * 109.46967 * 84.20001 * 21 19 17 23 23 H 1.48497 * 109.47318 * 204.20409 * 21 19 17 24 24 H 1.48508 * 109.47215 * 324.20310 * 21 19 17 25 25 C 1.47215 * 106.59817 * 328.72644 * 16 15 13 26 26 C 1.53780 * 106.37577 * 31.27896 * 25 16 15 27 27 C 1.52994 * 112.60457 * 103.50269 * 26 25 16 28 28 C 1.47218 * 126.70146 * 179.97438 * 11 9 3 29 29 H 1.08995 * 109.47519 * 300.65586 * 1 2 3 30 30 H 1.09003 * 109.47021 * 60.66222 * 1 2 3 31 31 H 1.08998 * 109.46667 * 180.65452 * 1 2 3 32 32 H 1.08992 * 109.47848 * 240.00289 * 2 1 3 33 33 H 1.09004 * 109.47217 * 119.99688 * 2 1 3 34 34 H 1.09007 * 109.46813 * 64.83260 * 5 3 2 35 35 H 1.08994 * 109.47376 * 304.83355 * 5 3 2 36 36 H 1.09005 * 109.46577 * 52.93857 * 6 5 3 37 37 H 1.08998 * 110.06976 * 267.98716 * 12 11 9 38 38 H 1.09003 * 110.07257 * 29.53238 * 12 11 9 39 39 H 1.08997 * 110.07446 * 250.75982 * 15 13 12 40 40 H 1.09000 * 110.07341 * 12.24517 * 15 13 12 41 41 H 0.96998 * 119.99974 * 179.97438 * 20 19 17 42 42 H 1.08992 * 110.07635 * 272.04461 * 25 16 15 43 43 H 1.09007 * 110.06913 * 150.50456 * 25 16 15 44 44 H 1.09003 * 109.47654 * 182.60002 * 27 26 25 45 45 H 1.08996 * 109.47705 * 302.60978 * 27 26 25 46 46 H 1.09005 * 109.46859 * 62.60622 * 27 26 25 47 47 H 1.08999 * 110.07590 * 330.47276 * 28 11 9 48 48 H 1.09002 * 110.07024 * 91.95542 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5722 1.9933 -0.8161 5 6 1.6877 2.1080 1.3320 6 6 2.0898 3.5835 1.2870 7 9 3.4838 3.6854 1.2265 8 9 1.6245 4.2289 2.4377 9 6 3.5357 1.4466 -0.1836 10 8 4.2653 1.3564 0.7810 11 7 4.0626 1.5505 -1.4197 12 6 3.3202 1.6608 -2.6862 13 6 4.1966 2.5099 -3.6265 14 1 4.1695 2.1362 -4.6501 15 6 3.7783 3.9863 -3.5251 16 7 5.0191 4.7578 -3.3452 17 6 5.2594 6.0342 -3.7793 18 1 4.6777 6.4472 -4.5901 19 6 6.2507 6.7970 -3.1773 20 7 6.6292 7.9332 -3.7230 21 14 7.0472 6.2108 -1.5925 22 1 8.1450 5.2631 -1.9114 23 1 7.5977 7.3761 -0.8548 24 1 6.0318 5.5273 -0.7515 25 6 5.9508 3.8895 -2.6069 26 6 5.6218 2.4464 -3.0243 27 6 6.6371 1.8751 -4.0160 28 6 5.4929 1.5699 -1.7677 29 1 -0.3634 0.5239 0.8840 30 1 -0.3633 0.5035 -0.8959 31 1 -0.3632 -1.0276 0.0117 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2238 1.6098 2.1399 35 1 0.6146 2.0289 1.5051 36 1 1.6526 4.0525 0.4054 37 1 3.1596 0.6708 -3.1130 38 1 2.3639 2.1557 -2.5174 39 1 3.2744 4.2961 -4.4407 40 1 3.1195 4.1305 -2.6688 41 1 7.3217 8.4664 -3.3022 42 1 5.8049 4.0111 -1.5337 43 1 6.9794 4.1312 -2.8749 44 1 6.3311 0.8716 -4.3119 45 1 6.6843 2.5151 -4.8970 46 1 7.6195 1.8315 -3.5457 47 1 6.0710 2.0007 -0.9501 48 1 5.8403 0.5586 -1.9788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101264344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:39 Heat of formation + Delta-G solvation = -140.953001 kcal Electronic energy + Delta-G solvation = -31320.208078 eV Core-core repulsion = 27045.127690 eV Total energy + Delta-G solvation = -4275.080388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.96184 -47.99961 -41.83985 -40.10575 -36.85262 -36.62697 -34.43128 -33.24680 -31.95842 -31.78901 -28.72818 -27.98429 -27.17660 -26.59492 -24.19619 -23.84190 -22.39635 -22.20847 -20.46501 -20.04831 -19.10662 -18.58554 -18.25845 -17.90336 -17.52181 -17.15775 -16.98992 -16.31176 -15.95514 -15.73727 -15.23086 -15.05186 -14.91736 -14.81210 -14.64554 -14.42404 -14.27455 -14.23902 -13.85293 -13.58867 -13.51122 -13.42220 -13.35203 -13.07909 -13.02085 -12.86933 -12.75216 -12.49823 -12.36506 -12.20647 -12.17316 -11.81979 -11.72751 -11.55521 -11.53940 -11.45843 -11.23750 -10.98388 -10.72860 -9.65284 -9.06612 -8.23399 -5.53924 1.16032 1.29046 1.33694 1.61701 1.98446 2.29875 2.79952 3.04399 3.22356 3.26317 3.28441 3.38745 3.52170 3.61589 3.73056 3.81550 3.99454 4.06000 4.15298 4.17183 4.27790 4.33170 4.44857 4.52747 4.55957 4.63014 4.64812 4.65713 4.72753 4.76902 4.84346 4.86476 4.93513 4.96702 4.99176 5.13083 5.15569 5.20570 5.27265 5.29313 5.31840 5.50476 5.52267 5.65765 6.06950 6.57974 6.70434 7.17304 7.47984 8.10300 8.97331 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012680 B = 0.005108 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.662315 B = 5479.994934 C = 6557.559868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.097 4.097 4 H 0.123 0.877 5 C -0.148 4.148 6 C 0.240 3.760 7 F -0.226 7.226 8 F -0.217 7.217 9 C 0.523 3.477 10 O -0.580 6.580 11 N -0.616 5.616 12 C 0.109 3.891 13 C -0.096 4.096 14 H 0.129 0.871 15 C 0.134 3.866 16 N -0.623 5.623 17 C -0.217 4.217 18 H 0.073 0.927 19 C -0.030 4.030 20 N -0.961 5.961 21 Si 0.938 3.062 22 H -0.278 1.278 23 H -0.312 1.312 24 H -0.277 1.277 25 C 0.111 3.889 26 C -0.078 4.078 27 C -0.119 4.119 28 C 0.120 3.880 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.261 0.739 42 H 0.007 0.993 43 H 0.036 0.964 44 H 0.095 0.905 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.040 0.960 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.431 -21.960 2.814 26.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.139 4.139 3 C -0.118 4.118 4 H 0.141 0.859 5 C -0.186 4.186 6 C 0.186 3.814 7 F -0.207 7.207 8 F -0.199 7.199 9 C 0.313 3.687 10 O -0.460 6.460 11 N -0.349 5.349 12 C -0.013 4.013 13 C -0.115 4.115 14 H 0.146 0.854 15 C 0.010 3.990 16 N -0.348 5.348 17 C -0.346 4.346 18 H 0.091 0.909 19 C -0.224 4.224 20 N -0.609 5.609 21 Si 0.770 3.230 22 H -0.204 1.204 23 H -0.241 1.241 24 H -0.203 1.203 25 C -0.014 4.014 26 C -0.080 4.080 27 C -0.177 4.177 28 C -0.004 4.004 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.025 0.975 43 H 0.054 0.946 44 H 0.113 0.887 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.973 -21.768 3.423 26.641 hybrid contribution 1.461 1.089 1.242 2.205 sum -13.512 -20.679 4.665 25.139 Atomic orbital electron populations 1.21839 0.92653 1.03100 1.03145 1.21379 0.98050 0.91221 1.03246 1.21437 0.89830 1.01459 0.99114 0.85949 1.22674 1.06067 0.90821 0.99063 1.22609 0.75361 0.96136 0.87263 1.93044 1.33696 1.97221 1.96764 1.92939 1.88325 1.83988 1.54619 1.20916 0.91901 0.75146 0.80763 1.90690 1.63546 1.51648 1.40098 1.48610 1.07776 1.71799 1.06705 1.22511 0.95413 1.01589 0.81772 1.22945 0.92650 0.94854 1.01098 0.85351 1.21687 0.87868 0.90485 0.99008 1.44905 1.12060 1.11882 1.65997 1.18685 1.16699 0.87702 1.11478 0.90882 1.25491 1.00449 0.95936 1.00546 1.69817 1.33497 1.15898 1.41663 0.86207 0.78821 0.75517 0.82474 1.20446 1.24107 1.20266 1.22008 0.94027 0.91335 0.94034 1.22045 0.97610 0.92953 0.95389 1.21629 0.97073 1.01631 0.97345 1.21991 0.82935 1.00077 0.95367 0.91878 0.90896 0.91352 0.90110 0.92179 0.90109 0.84006 0.85168 0.86964 0.88342 0.92154 0.95840 0.92953 0.97516 0.94554 0.88670 0.92797 0.92952 0.94143 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.72 71.98 0.70 -0.29 16 2 C -0.10 -1.18 5.37 30.59 0.16 -1.01 16 3 C -0.10 -1.66 1.83 -11.54 -0.02 -1.68 16 4 H 0.12 1.46 6.38 -2.38 -0.02 1.45 16 5 C -0.15 -2.77 4.68 30.60 0.14 -2.62 16 6 C 0.24 6.18 5.23 71.98 0.38 6.55 16 7 F -0.23 -8.69 14.46 44.97 0.65 -8.04 16 8 F -0.22 -6.10 17.34 44.97 0.78 -5.32 16 9 C 0.52 14.48 5.55 87.66 0.49 14.96 16 10 O -0.58 -21.87 14.94 -3.03 -0.05 -21.91 16 11 N -0.62 -15.74 3.32 -814.64 -2.70 -18.45 16 12 C 0.11 1.88 6.19 86.60 0.54 2.41 16 13 C -0.10 -2.30 3.68 -9.54 -0.04 -2.34 16 14 H 0.13 2.36 7.88 -2.39 -0.02 2.34 16 15 C 0.13 4.58 6.72 86.51 0.58 5.17 16 16 N -0.62 -29.39 3.21 -695.32 -2.23 -31.62 16 17 C -0.22 -12.42 10.73 84.03 0.90 -11.52 16 18 H 0.07 4.43 8.06 -2.91 -0.02 4.40 16 19 C -0.03 -1.83 5.50 84.86 0.47 -1.36 16 20 N -0.96 -61.96 13.97 21.65 0.30 -61.66 16 21 Si 0.94 51.31 24.37 68.60 1.67 52.98 16 22 H -0.28 -14.50 6.49 99.48 0.65 -13.85 16 23 H -0.31 -17.29 7.11 99.48 0.71 -16.58 16 24 H -0.28 -15.45 5.83 99.48 0.58 -14.87 16 25 C 0.11 4.88 3.83 86.51 0.33 5.21 16 26 C -0.08 -2.34 1.09 -51.03 -0.06 -2.40 16 27 C -0.12 -2.96 8.49 71.98 0.61 -2.35 16 28 C 0.12 3.46 5.95 86.50 0.51 3.97 16 29 H 0.06 0.38 6.52 -2.39 -0.02 0.37 16 30 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.07 0.38 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.82 8.13 -2.39 -0.02 0.80 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 1.87 7.68 -2.38 -0.02 1.86 16 35 H 0.14 1.52 6.44 -2.39 -0.02 1.50 16 36 H 0.13 2.61 8.14 -2.38 -0.02 2.59 16 37 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 1.33 5.90 -2.39 -0.01 1.32 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.02 0.80 7.41 -2.39 -0.02 0.79 16 41 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 42 H 0.01 0.36 4.98 -2.39 -0.01 0.35 16 43 H 0.04 1.76 5.36 -2.38 -0.01 1.74 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.05 1.32 8.14 -2.38 -0.02 1.31 16 47 H 0.04 1.48 7.29 -2.39 -0.02 1.47 16 48 H 0.09 2.17 7.87 -2.39 -0.02 2.15 16 Total: -1.00 -84.02 367.06 4.90 -79.13 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 0.77 Total: 2.17 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.70 Total: 12.71 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -4.63 Total: -111.72 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.05 Total: -21.91 kcal Atomic # 9 Polarization: -14.79 SS G_CDS: 1.43 Total: -13.36 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 1.67 Total: 52.98 kcal Total: -84.02 4.90 -79.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101264344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.823 kcal (2) G-P(sol) polarization free energy of solvation -84.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds