Wall clock time and date at job start Tue Mar 31 2020 17:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.90921 * 2 1 4 4 C 1.55119 * 111.16580 * 236.08083 * 2 1 3 5 5 N 1.47423 * 104.94123 * 205.13040 * 4 2 1 6 6 C 1.36942 * 125.64859 * 203.96139 * 5 4 2 7 7 H 1.07996 * 120.00129 * 180.02562 * 6 5 4 8 8 C 1.38810 * 119.99626 * 0.04303 * 6 5 4 9 9 N 1.31615 * 120.00336 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99921 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46918 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46785 * 119.99690 * 10 8 6 13 13 H 1.48492 * 109.47304 * 240.00058 * 10 8 6 14 14 C 1.47018 * 108.70436 * 23.99845 * 5 4 2 15 15 C 1.54323 * 107.27180 * 358.94159 * 14 5 4 16 16 H 1.09003 * 110.71871 * 96.34785 * 15 14 5 17 17 C 1.53002 * 110.71939 * 219.44472 * 15 14 5 18 18 N 1.46506 * 109.47035 * 291.15540 * 17 15 14 19 19 C 1.34777 * 119.99873 * 179.97438 * 18 17 15 20 20 O 1.21284 * 119.99754 * 0.02562 * 19 18 17 21 21 C 1.50696 * 120.00137 * 180.02562 * 19 18 17 22 22 C 1.53002 * 109.47303 * 180.02562 * 21 19 18 23 23 H 1.08996 * 110.67121 * 54.29755 * 22 21 19 24 24 C 1.54893 * 110.75297 * 291.06198 * 22 21 19 25 25 C 1.54464 * 104.10169 * 203.89212 * 24 22 21 26 26 C 1.53875 * 106.68327 * 23.34589 * 25 24 22 27 27 F 1.39901 * 110.03293 * 240.87271 * 26 25 24 28 28 F 1.39907 * 110.03305 * 119.44170 * 26 25 24 29 29 C 1.54268 * 106.60011 * 0.15489 * 26 25 24 30 30 H 1.08994 * 109.47473 * 296.09235 * 1 2 3 31 31 H 1.09000 * 109.47206 * 56.09549 * 1 2 3 32 32 H 1.09006 * 109.46984 * 176.09182 * 1 2 3 33 33 H 1.08994 * 110.42398 * 86.20055 * 4 2 1 34 34 H 1.09010 * 110.29686 * 323.99064 * 4 2 1 35 35 H 0.97003 * 120.00513 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.88360 * 239.52715 * 14 5 4 37 37 H 1.08997 * 110.01473 * 118.43442 * 14 5 4 38 38 H 1.09004 * 109.46930 * 171.15770 * 17 15 14 39 39 H 1.09000 * 109.47312 * 51.15714 * 17 15 14 40 40 H 0.96999 * 120.00080 * 0.02562 * 18 17 15 41 41 H 1.09000 * 109.46978 * 300.00347 * 21 19 18 42 42 H 1.08996 * 109.47197 * 59.99985 * 21 19 18 43 43 H 1.08998 * 110.48779 * 322.42741 * 24 22 21 44 44 H 1.09006 * 110.48115 * 85.06757 * 24 22 21 45 45 H 1.08993 * 109.86007 * 264.10871 * 25 24 22 46 46 H 1.09002 * 110.16242 * 142.75204 * 25 24 22 47 47 H 1.08996 * 110.49202 * 217.70883 * 29 26 25 48 48 H 1.09001 * 110.59737 * 95.12391 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0901 -0.8072 -1.2004 5 7 3.4299 -1.2471 -0.7706 6 6 4.4676 -1.5738 -1.6023 7 1 5.4143 -1.8865 -1.1873 8 6 4.3026 -1.5027 -2.9787 9 7 3.1487 -1.1218 -3.4845 10 14 5.7184 -1.9477 -4.1133 11 1 6.8980 -2.3415 -3.3018 12 1 5.3169 -3.0812 -4.9847 13 1 6.0654 -0.7748 -4.9553 14 6 3.4672 -1.2779 0.6988 15 6 2.0861 -0.8079 1.2021 16 1 1.4451 -1.6614 1.4228 17 6 2.2349 0.0876 2.4338 18 7 2.7029 -0.7144 3.5670 19 6 2.9072 -0.1328 4.7655 20 8 2.7032 1.0545 4.9059 21 6 3.3892 -0.9575 5.9310 22 6 3.5379 -0.0621 7.1627 23 1 2.6092 0.4716 7.3647 24 6 4.7131 0.9304 6.9811 25 6 5.1264 1.2925 8.4247 26 6 4.6540 0.1357 9.3227 27 9 3.7383 0.6072 10.2695 28 9 5.7499 -0.4504 9.9654 29 6 3.9733 -0.8924 8.3956 30 1 -0.3634 0.4519 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3633 -1.0253 -0.0700 33 1 2.1643 -0.1730 -2.0837 34 1 1.4553 -1.6694 -1.4054 35 1 3.0333 -1.0725 -4.4463 36 1 4.2434 -0.6055 1.0641 37 1 3.6625 -2.2925 1.0458 38 1 1.2705 0.5331 2.6777 39 1 2.9571 0.8767 2.2242 40 1 2.8664 -1.6639 3.4545 41 1 2.6671 -1.7466 6.1409 42 1 4.3535 -1.4031 5.6867 43 1 5.5403 0.4505 6.4579 44 1 4.3828 1.8180 6.4415 45 1 4.6422 2.2211 8.7265 46 1 6.2093 1.3978 8.4902 47 1 3.1046 -1.3317 8.8858 48 1 4.6784 -1.6700 8.1021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102031755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:29 Heat of formation + Delta-G solvation = -139.912264 kcal Electronic energy + Delta-G solvation = -28458.953511 eV Core-core repulsion = 24183.918253 eV Total energy + Delta-G solvation = -4275.035258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.19778 -47.27294 -40.02993 -38.26125 -37.42851 -34.66681 -33.00138 -31.67932 -30.78863 -29.44747 -28.87277 -26.40169 -25.78143 -24.81503 -22.81688 -21.37972 -21.15033 -20.35080 -19.86707 -19.27494 -17.92928 -17.29190 -17.04305 -16.77784 -16.21265 -15.91570 -15.52236 -15.01351 -14.74693 -14.61875 -14.36549 -14.05959 -13.80621 -13.62057 -13.60877 -13.48175 -13.20223 -12.88685 -12.68568 -12.41649 -12.17171 -11.94345 -11.92098 -11.75222 -11.58920 -11.46806 -11.24226 -11.17422 -11.01183 -10.97880 -10.90149 -10.84172 -10.27224 -10.05625 -9.96827 -9.90592 -9.73614 -9.39881 -8.98309 -8.68954 -6.87019 -5.68979 -3.10924 2.61545 3.11301 3.36892 3.42392 3.44440 3.44888 3.62336 3.83305 4.02094 4.44938 4.55813 4.63480 4.63684 4.81881 4.98329 5.00291 5.05443 5.16775 5.19712 5.22094 5.27117 5.29358 5.41347 5.46341 5.51789 5.54864 5.65853 5.73105 5.83843 5.89544 5.97566 6.03423 6.09277 6.16929 6.22960 6.43004 6.49503 6.55997 6.58345 6.76110 6.91054 7.49837 7.51357 7.59842 7.83141 8.21241 8.32991 9.18560 9.79443 10.44067 11.34784 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.002124 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.394555 B =13179.204286 C =14182.399610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.159 3.841 5 N -0.605 5.605 6 C -0.223 4.223 7 H 0.077 0.923 8 C -0.012 4.012 9 N -0.921 5.921 10 Si 0.914 3.086 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.290 1.290 14 C 0.142 3.858 15 C -0.110 4.110 16 H 0.076 0.924 17 C 0.133 3.867 18 N -0.726 5.726 19 C 0.510 3.490 20 O -0.543 6.543 21 C -0.135 4.135 22 C -0.073 4.073 23 H 0.095 0.905 24 C -0.116 4.116 25 C -0.164 4.164 26 C 0.280 3.720 27 F -0.200 7.200 28 F -0.202 7.202 29 C -0.159 4.159 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.013 0.987 35 H 0.252 0.748 36 H 0.023 0.977 37 H 0.017 0.983 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.401 0.599 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.329 0.729 22.431 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 H 0.089 0.911 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.351 4.351 7 H 0.095 0.905 8 C -0.207 4.207 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.016 3.984 15 C -0.129 4.129 16 H 0.094 0.906 17 C 0.009 3.991 18 N -0.377 5.377 19 C 0.296 3.704 20 O -0.420 6.420 21 C -0.175 4.175 22 C -0.092 4.092 23 H 0.113 0.887 24 C -0.153 4.153 25 C -0.202 4.202 26 C 0.244 3.756 27 F -0.181 7.181 28 F -0.183 7.183 29 C -0.197 4.197 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.124 0.876 34 H 0.031 0.969 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.035 0.965 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.235 0.765 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.403 1.567 22.337 22.436 hybrid contribution 0.828 -0.885 -0.442 1.290 sum -0.575 0.682 21.895 21.913 Atomic orbital electron populations 1.21645 0.95481 1.01401 1.00666 1.22628 0.94584 0.99510 0.96432 0.91068 1.22020 0.84047 0.95865 0.94654 1.44492 1.10713 1.78829 0.99031 1.19111 0.91119 1.37620 0.87237 0.90495 1.24794 0.97309 1.01955 0.96644 1.69802 1.22500 1.53766 1.10931 0.86005 0.81111 0.77634 0.80787 1.20544 1.21751 1.21705 1.21320 0.93435 0.97018 0.86645 1.22493 0.98573 0.98125 0.93725 0.90584 1.21443 0.99495 0.93885 0.84257 1.46123 1.68125 1.13124 1.10288 1.20538 0.77530 0.88375 0.83932 1.90689 1.51574 1.15755 1.84025 1.21681 1.03733 0.98943 0.93132 1.21820 1.00252 0.95267 0.91884 0.88702 1.22480 0.97443 1.00968 0.94417 1.23231 1.03712 0.97446 0.95849 1.21851 0.77287 0.93151 0.83296 1.93017 1.67337 1.89581 1.68133 1.93013 1.55385 1.85630 1.84236 1.23430 1.02400 0.97748 0.96095 0.93669 0.92651 0.92970 0.87613 0.96930 0.93749 0.95889 0.96480 0.91702 0.91347 0.76475 0.88494 0.88404 0.90783 0.88790 0.88778 0.88822 0.88799 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.32 37.16 0.35 -1.65 16 2 C -0.11 -1.98 3.10 -88.36 -0.27 -2.26 16 3 H 0.07 1.30 8.05 -51.93 -0.42 0.89 16 4 C 0.16 3.72 5.37 -2.42 -0.01 3.71 16 5 N -0.61 -15.05 3.40 -169.94 -0.58 -15.63 16 6 C -0.22 -6.09 10.27 -15.06 -0.15 -6.24 16 7 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 8 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 9 N -0.92 -26.46 10.09 55.49 0.56 -25.90 16 10 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 14 C 0.14 2.76 6.64 -3.07 -0.02 2.74 16 15 C -0.11 -1.73 2.45 -88.79 -0.22 -1.95 16 16 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 17 C 0.13 1.83 5.00 -4.04 -0.02 1.81 16 18 N -0.73 -8.18 5.43 -60.29 -0.33 -8.50 16 19 C 0.51 5.75 7.64 -10.99 -0.08 5.66 16 20 O -0.54 -8.04 14.67 5.55 0.08 -7.96 16 21 C -0.13 -0.97 5.20 -27.88 -0.15 -1.12 16 22 C -0.07 -0.57 2.46 -88.62 -0.22 -0.78 16 23 H 0.09 0.85 7.97 -51.93 -0.41 0.44 16 24 C -0.12 -0.95 5.69 -24.96 -0.14 -1.09 16 25 C -0.16 -1.26 6.50 -25.51 -0.17 -1.43 16 26 C 0.28 2.42 2.57 -25.61 -0.07 2.35 16 27 F -0.20 -2.06 17.04 2.25 0.04 -2.02 16 28 F -0.20 -2.01 17.04 2.25 0.04 -1.97 16 29 C -0.16 -1.06 5.85 -25.07 -0.15 -1.21 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.11 2.83 5.87 -51.93 -0.31 2.52 16 34 H 0.01 0.32 7.99 -51.92 -0.41 -0.10 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 36 H 0.02 0.46 7.73 -51.93 -0.40 0.06 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 40 H 0.40 3.72 8.40 -40.82 -0.34 3.37 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.57 8.05 -51.93 -0.42 0.15 16 43 H 0.07 0.57 7.98 -51.93 -0.41 0.15 16 44 H 0.09 0.95 7.21 -51.93 -0.37 0.57 16 45 H 0.09 0.70 8.02 -51.93 -0.42 0.28 16 46 H 0.09 0.64 8.02 -51.93 -0.42 0.23 16 47 H 0.09 0.56 8.11 -51.93 -0.42 0.14 16 48 H 0.10 0.55 8.02 -51.93 -0.42 0.14 16 LS Contribution 384.48 15.07 5.79 5.79 Total: -1.00 -31.73 384.48 -8.92 -40.65 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.08 Total: 0.65 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.42 Total: -1.87 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.34 Total: -50.03 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.08 Total: -7.96 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.08 Total: -3.99 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.73 -8.92 -40.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102031755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.263 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds