Wall clock time and date at job start Tue Mar 31 2020 17:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.90921 * 2 1 4 4 C 1.55119 * 111.16580 * 236.08083 * 2 1 3 5 5 N 1.47423 * 104.94123 * 205.13040 * 4 2 1 6 6 C 1.36942 * 125.64859 * 203.96139 * 5 4 2 7 7 H 1.07996 * 120.00129 * 180.02562 * 6 5 4 8 8 C 1.38810 * 119.99626 * 0.04303 * 6 5 4 9 9 N 1.31615 * 120.00336 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99921 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46918 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46785 * 119.99690 * 10 8 6 13 13 H 1.48492 * 109.47304 * 240.00058 * 10 8 6 14 14 C 1.47018 * 108.70436 * 23.99845 * 5 4 2 15 15 C 1.54323 * 107.27180 * 358.94159 * 14 5 4 16 16 H 1.09003 * 110.71871 * 96.34785 * 15 14 5 17 17 C 1.53002 * 110.71939 * 219.44472 * 15 14 5 18 18 N 1.46506 * 109.47035 * 291.15540 * 17 15 14 19 19 C 1.34777 * 119.99873 * 179.97438 * 18 17 15 20 20 O 1.21284 * 119.99754 * 0.02562 * 19 18 17 21 21 C 1.50696 * 120.00137 * 180.02562 * 19 18 17 22 22 C 1.53002 * 109.47303 * 180.02562 * 21 19 18 23 23 H 1.08996 * 110.67121 * 54.29755 * 22 21 19 24 24 C 1.54893 * 110.75297 * 291.06198 * 22 21 19 25 25 C 1.54464 * 104.10169 * 203.89212 * 24 22 21 26 26 C 1.53875 * 106.68327 * 23.34589 * 25 24 22 27 27 F 1.39901 * 110.03293 * 240.87271 * 26 25 24 28 28 F 1.39907 * 110.03305 * 119.44170 * 26 25 24 29 29 C 1.54268 * 106.60011 * 0.15489 * 26 25 24 30 30 H 1.08994 * 109.47473 * 296.09235 * 1 2 3 31 31 H 1.09000 * 109.47206 * 56.09549 * 1 2 3 32 32 H 1.09006 * 109.46984 * 176.09182 * 1 2 3 33 33 H 1.08994 * 110.42398 * 86.20055 * 4 2 1 34 34 H 1.09010 * 110.29686 * 323.99064 * 4 2 1 35 35 H 0.97003 * 120.00513 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.88360 * 239.52715 * 14 5 4 37 37 H 1.08997 * 110.01473 * 118.43442 * 14 5 4 38 38 H 1.09004 * 109.46930 * 171.15770 * 17 15 14 39 39 H 1.09000 * 109.47312 * 51.15714 * 17 15 14 40 40 H 0.96999 * 120.00080 * 0.02562 * 18 17 15 41 41 H 1.09000 * 109.46978 * 300.00347 * 21 19 18 42 42 H 1.08996 * 109.47197 * 59.99985 * 21 19 18 43 43 H 1.08998 * 110.48779 * 322.42741 * 24 22 21 44 44 H 1.09006 * 110.48115 * 85.06757 * 24 22 21 45 45 H 1.08993 * 109.86007 * 264.10871 * 25 24 22 46 46 H 1.09002 * 110.16242 * 142.75204 * 25 24 22 47 47 H 1.08996 * 110.49202 * 217.70883 * 29 26 25 48 48 H 1.09001 * 110.59737 * 95.12391 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0901 -0.8072 -1.2004 5 7 3.4299 -1.2471 -0.7706 6 6 4.4676 -1.5738 -1.6023 7 1 5.4143 -1.8865 -1.1873 8 6 4.3026 -1.5027 -2.9787 9 7 3.1487 -1.1218 -3.4845 10 14 5.7184 -1.9477 -4.1133 11 1 6.8980 -2.3415 -3.3018 12 1 5.3169 -3.0812 -4.9847 13 1 6.0654 -0.7748 -4.9553 14 6 3.4672 -1.2779 0.6988 15 6 2.0861 -0.8079 1.2021 16 1 1.4451 -1.6614 1.4228 17 6 2.2349 0.0876 2.4338 18 7 2.7029 -0.7144 3.5670 19 6 2.9072 -0.1328 4.7655 20 8 2.7032 1.0545 4.9059 21 6 3.3892 -0.9575 5.9310 22 6 3.5379 -0.0621 7.1627 23 1 2.6092 0.4716 7.3647 24 6 4.7131 0.9304 6.9811 25 6 5.1264 1.2925 8.4247 26 6 4.6540 0.1357 9.3227 27 9 3.7383 0.6072 10.2695 28 9 5.7499 -0.4504 9.9654 29 6 3.9733 -0.8924 8.3956 30 1 -0.3634 0.4519 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3633 -1.0253 -0.0700 33 1 2.1643 -0.1730 -2.0837 34 1 1.4553 -1.6694 -1.4054 35 1 3.0333 -1.0725 -4.4463 36 1 4.2434 -0.6055 1.0641 37 1 3.6625 -2.2925 1.0458 38 1 1.2705 0.5331 2.6777 39 1 2.9571 0.8767 2.2242 40 1 2.8664 -1.6639 3.4545 41 1 2.6671 -1.7466 6.1409 42 1 4.3535 -1.4031 5.6867 43 1 5.5403 0.4505 6.4579 44 1 4.3828 1.8180 6.4415 45 1 4.6422 2.2211 8.7265 46 1 6.2093 1.3978 8.4902 47 1 3.1046 -1.3317 8.8858 48 1 4.6784 -1.6700 8.1021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102031755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:28 Heat of formation + Delta-G solvation = -158.451146 kcal Electronic energy + Delta-G solvation = -28459.757417 eV Core-core repulsion = 24183.918253 eV Total energy + Delta-G solvation = -4275.839164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -49.90976 -48.00019 -40.94789 -39.63838 -38.23687 -35.96546 -34.62817 -32.55800 -32.40458 -30.64647 -29.58479 -27.91135 -27.05836 -26.05209 -24.32581 -22.19854 -21.91710 -21.41308 -21.22509 -20.54665 -18.89034 -18.61476 -18.02845 -17.69718 -17.19320 -16.96880 -16.58831 -16.37588 -15.83604 -15.63297 -15.43995 -15.27843 -14.76571 -14.75310 -14.47101 -14.40999 -14.31589 -14.12113 -13.95335 -13.49258 -13.39200 -13.19352 -12.92319 -12.85505 -12.76687 -12.65248 -12.51320 -12.45156 -12.32554 -11.93582 -11.87215 -11.80742 -11.66651 -11.58858 -11.57361 -11.38793 -11.21122 -10.75729 -10.65016 -9.98656 -8.86751 -7.76792 -5.21010 1.46682 1.47322 1.57492 1.76591 2.26132 2.49556 2.80869 3.00939 3.20715 3.32721 3.41206 3.65229 3.78151 3.89877 3.93555 3.99673 4.03623 4.04996 4.26369 4.36691 4.40564 4.43831 4.50318 4.55497 4.64706 4.68436 4.76737 4.79947 4.83445 4.86678 4.91571 4.94493 5.00578 5.06674 5.11343 5.18933 5.25616 5.36227 5.37972 5.42247 5.50237 5.55414 5.73391 5.86012 6.32963 6.66574 7.12085 7.36450 7.80262 8.43606 9.24893 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.002124 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.394555 B =13179.204286 C =14182.399610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.063 0.937 4 C 0.162 3.838 5 N -0.630 5.630 6 C -0.236 4.236 7 H 0.081 0.919 8 C -0.069 4.069 9 N -0.949 5.949 10 Si 0.978 3.022 11 H -0.266 1.266 12 H -0.292 1.292 13 H -0.293 1.293 14 C 0.138 3.862 15 C -0.089 4.089 16 H 0.095 0.905 17 C 0.146 3.854 18 N -0.720 5.720 19 C 0.507 3.493 20 O -0.582 6.582 21 C -0.126 4.126 22 C -0.071 4.071 23 H 0.079 0.921 24 C -0.115 4.115 25 C -0.162 4.162 26 C 0.271 3.729 27 F -0.212 7.212 28 F -0.210 7.210 29 C -0.148 4.148 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.067 0.933 34 H -0.010 1.010 35 H 0.246 0.754 36 H 0.020 0.980 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.414 0.586 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 -0.619 24.250 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 H 0.082 0.918 4 C 0.037 3.963 5 N -0.356 5.356 6 C -0.365 4.365 7 H 0.098 0.902 8 C -0.262 4.262 9 N -0.599 5.599 10 Si 0.807 3.193 11 H -0.190 1.190 12 H -0.219 1.219 13 H -0.220 1.220 14 C 0.014 3.986 15 C -0.108 4.108 16 H 0.113 0.887 17 C 0.021 3.979 18 N -0.372 5.372 19 C 0.296 3.704 20 O -0.462 6.462 21 C -0.166 4.166 22 C -0.090 4.090 23 H 0.097 0.903 24 C -0.152 4.152 25 C -0.200 4.200 26 C 0.235 3.765 27 F -0.193 7.193 28 F -0.191 7.191 29 C -0.186 4.186 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.008 0.992 35 H 0.056 0.944 36 H 0.038 0.962 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.250 0.750 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.119 0.881 47 H 0.123 0.877 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.204 0.193 24.197 24.227 hybrid contribution 0.793 -0.432 -0.977 1.331 sum -0.410 -0.240 23.220 23.224 Atomic orbital electron populations 1.21594 0.92826 1.01930 1.02104 1.22463 0.96671 0.98302 0.94781 0.91826 1.21790 0.83803 0.94889 0.95867 1.44828 1.10596 1.78840 1.01301 1.19479 0.92030 1.36935 0.88028 0.90159 1.25628 0.99710 1.02647 0.98184 1.70068 1.24235 1.54959 1.10623 0.85008 0.78759 0.76869 0.78693 1.19045 1.21936 1.22020 1.21502 0.95620 0.97699 0.83828 1.22322 0.96371 0.98541 0.93537 0.88671 1.21109 0.99400 0.93109 0.84263 1.46026 1.67971 1.13565 1.09674 1.21257 0.76474 0.88191 0.84525 1.90687 1.53193 1.17734 1.84620 1.21717 1.05522 0.98636 0.90680 1.21757 0.99232 0.95323 0.92732 0.90282 1.22434 0.98028 1.00395 0.94373 1.23210 1.04182 0.97172 0.95437 1.22164 0.77105 0.94033 0.83193 1.92992 1.67754 1.89842 1.68747 1.92995 1.55854 1.85757 1.84484 1.23402 1.03054 0.97294 0.94845 0.90798 0.92883 0.92663 0.91540 0.99200 0.94417 0.96199 0.95151 0.91019 0.93394 0.74993 0.85582 0.86128 0.89924 0.91082 0.89080 0.88055 0.87710 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.32 71.98 0.67 -2.89 16 2 C -0.10 -3.57 3.10 -9.33 -0.03 -3.60 16 3 H 0.06 2.32 8.05 -2.39 -0.02 2.31 16 4 C 0.16 7.75 5.37 86.93 0.47 8.22 16 5 N -0.63 -31.64 3.40 -691.58 -2.35 -33.99 16 6 C -0.24 -13.03 10.27 84.03 0.86 -12.16 16 7 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 8 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 9 N -0.95 -56.29 10.09 21.65 0.22 -56.07 16 10 Si 0.98 45.30 29.55 68.60 2.03 47.33 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 13 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 14 C 0.14 5.24 6.64 86.73 0.58 5.82 16 15 C -0.09 -2.62 2.45 -9.61 -0.02 -2.65 16 16 H 0.10 2.52 8.04 -2.39 -0.02 2.50 16 17 C 0.15 3.72 5.00 86.38 0.43 4.15 16 18 N -0.72 -14.22 5.43 -463.04 -2.51 -16.73 16 19 C 0.51 10.22 7.64 87.66 0.67 10.89 16 20 O -0.58 -16.62 14.67 -3.04 -0.04 -16.67 16 21 C -0.13 -1.37 5.20 29.85 0.16 -1.22 16 22 C -0.07 -0.94 2.46 -9.50 -0.02 -0.97 16 23 H 0.08 1.32 7.97 -2.39 -0.02 1.30 16 24 C -0.11 -1.75 5.69 31.74 0.18 -1.57 16 25 C -0.16 -2.33 6.50 31.39 0.20 -2.12 16 26 C 0.27 4.25 2.57 31.32 0.08 4.33 16 27 F -0.21 -4.17 17.04 44.97 0.77 -3.41 16 28 F -0.21 -3.85 17.04 44.97 0.77 -3.08 16 29 C -0.15 -1.56 5.85 31.67 0.19 -1.38 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.52 8.08 -2.38 -0.02 1.50 16 33 H 0.07 3.73 5.87 -2.39 -0.01 3.71 16 34 H -0.01 -0.51 7.99 -2.38 -0.02 -0.53 16 35 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.02 0.77 7.73 -2.39 -0.02 0.75 16 37 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.05 1.45 8.00 -2.39 -0.02 1.43 16 40 H 0.41 6.15 8.40 -92.71 -0.78 5.38 16 41 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.12 0.85 8.05 -2.39 -0.02 0.83 16 43 H 0.08 1.10 7.98 -2.39 -0.02 1.08 16 44 H 0.07 1.43 7.21 -2.38 -0.02 1.41 16 45 H 0.09 1.34 8.02 -2.39 -0.02 1.32 16 46 H 0.10 1.27 8.02 -2.39 -0.02 1.25 16 47 H 0.10 0.92 8.11 -2.39 -0.02 0.90 16 48 H 0.12 0.84 8.02 -2.39 -0.02 0.82 16 Total: -1.00 -71.42 384.48 3.92 -67.51 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.17 Total: 13.69 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 4.87 Total: 1.43 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -4.64 Total: -106.79 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.04 Total: -16.67 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 1.53 Total: -6.49 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -71.42 3.92 -67.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102031755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.945 kcal (2) G-P(sol) polarization free energy of solvation -71.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds