Wall clock time and date at job start Tue Mar 31 2020 17:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 110.78636 * 2 1 4 4 C 1.54323 * 110.72173 * 236.76126 * 2 1 3 5 5 N 1.47029 * 107.27090 * 219.44685 * 4 2 1 6 6 C 1.36941 * 125.64502 * 178.98496 * 5 4 2 7 7 H 1.07998 * 119.99854 * 179.97438 * 6 5 4 8 8 C 1.38811 * 119.99975 * 359.97438 * 6 5 4 9 9 N 1.31617 * 120.00455 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99745 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47446 * 59.99722 * 10 8 6 12 12 H 1.48498 * 109.47349 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46908 * 299.99915 * 10 8 6 14 14 C 1.47420 * 108.70263 * 358.93851 * 5 4 2 15 15 C 1.54911 * 104.83532 * 24.12965 * 14 5 4 16 16 H 1.09005 * 111.03425 * 81.07859 * 15 14 5 17 17 C 1.52997 * 111.00485 * 204.91496 * 15 14 5 18 18 N 1.46497 * 109.46983 * 287.19711 * 17 15 14 19 19 C 1.34780 * 119.99566 * 180.02562 * 18 17 15 20 20 O 1.21280 * 120.00423 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.99795 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47212 * 179.97438 * 21 19 18 23 23 H 1.08999 * 110.43445 * 305.70040 * 22 21 19 24 24 C 1.54893 * 110.48646 * 68.23822 * 22 21 19 25 25 C 1.55031 * 102.68366 * 156.51972 * 24 22 21 26 26 C 1.54273 * 104.27952 * 322.23584 * 25 24 22 27 27 F 1.39904 * 110.02918 * 264.23508 * 26 25 24 28 28 F 1.39898 * 110.03045 * 142.80555 * 26 25 24 29 29 C 1.53872 * 106.59741 * 23.51687 * 26 25 24 30 30 H 1.09002 * 109.47166 * 296.75829 * 1 2 3 31 31 H 1.09004 * 109.47160 * 56.75877 * 1 2 3 32 32 H 1.08993 * 109.47316 * 176.76384 * 1 2 3 33 33 H 1.09001 * 109.87923 * 338.85770 * 4 2 1 34 34 H 1.08997 * 109.88550 * 100.02642 * 4 2 1 35 35 H 0.97000 * 120.00350 * 180.02562 * 9 8 6 36 36 H 1.09000 * 110.36464 * 265.29047 * 14 5 4 37 37 H 1.09001 * 110.36269 * 142.96665 * 14 5 4 38 38 H 1.09001 * 109.46832 * 167.19527 * 17 15 14 39 39 H 1.09002 * 109.47153 * 47.19718 * 17 15 14 40 40 H 0.96995 * 120.00423 * 359.97438 * 18 17 15 41 41 H 1.09002 * 109.47060 * 299.99722 * 21 19 18 42 42 H 1.09001 * 109.47380 * 59.99809 * 21 19 18 43 43 H 1.08993 * 110.75740 * 274.93579 * 24 22 21 44 44 H 1.08996 * 110.75035 * 38.30740 * 24 22 21 45 45 H 1.09001 * 110.52513 * 203.49237 * 25 24 22 46 46 H 1.08994 * 110.48065 * 80.95792 * 25 24 22 47 47 H 1.08999 * 110.03084 * 240.71409 * 29 26 25 48 48 H 1.09003 * 110.03256 * 119.28408 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 3.2445 -1.5508 -0.7389 6 6 4.0044 -2.3969 -1.5018 7 1 4.8467 -2.9104 -1.0625 8 6 3.6918 -2.5945 -2.8398 9 7 2.6649 -1.9691 -3.3751 10 14 4.7280 -3.7492 -3.8802 11 1 4.6856 -5.1141 -3.2964 12 1 4.1900 -3.7862 -5.2638 13 1 6.1319 -3.2658 -3.9072 14 6 3.4632 -1.2498 0.6876 15 6 2.0789 -0.7955 1.2139 16 1 1.4447 -1.6533 1.4380 17 6 2.2277 0.1079 2.4396 18 7 2.6328 -0.6981 3.5939 19 6 2.8249 -0.1108 4.7918 20 8 2.6630 1.0849 4.9139 21 6 3.2421 -0.9398 5.9791 22 6 3.3909 -0.0364 7.2049 23 1 4.0703 0.7882 6.9897 24 6 2.0092 0.5023 7.6522 25 6 2.2423 0.8370 9.1479 26 6 3.1637 -0.2931 9.6516 27 9 2.4015 -1.3015 10.2512 28 9 4.0904 0.2165 10.5673 29 6 3.8939 -0.8484 8.4162 30 1 -0.3633 0.4627 0.9176 31 1 -0.3634 0.5633 -0.8595 32 1 -0.3633 -1.0259 -0.0580 33 1 1.3129 -1.4758 -1.5775 34 1 2.3741 -0.1024 -1.9977 35 1 2.4463 -2.1075 -4.3100 36 1 4.1931 -0.4479 0.7985 37 1 3.7959 -2.1427 1.2169 38 1 1.2748 0.5928 2.6514 39 1 2.9853 0.8663 2.2422 40 1 2.7619 -1.6544 3.4964 41 1 2.4850 -1.6988 6.1764 42 1 4.1954 -1.4240 5.7672 43 1 1.7435 1.3978 7.0906 44 1 1.2422 -0.2646 7.5439 45 1 1.2981 0.8307 9.6925 46 1 2.7341 1.8043 9.2500 47 1 3.6545 -1.9035 8.2839 48 1 4.9705 -0.7208 8.5301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102031756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:33 Heat of formation + Delta-G solvation = -140.637569 kcal Electronic energy + Delta-G solvation = -28415.138513 eV Core-core repulsion = 24140.071804 eV Total energy + Delta-G solvation = -4275.066709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.21244 -47.28760 -40.04394 -38.27525 -37.45202 -34.67184 -32.98826 -31.67906 -30.76023 -29.47400 -28.90324 -26.38105 -25.76965 -24.78425 -22.79361 -21.54360 -21.03029 -20.34642 -19.99525 -19.21450 -18.02403 -17.26067 -17.06323 -16.74033 -16.16767 -16.00650 -15.49571 -15.12174 -14.60495 -14.52466 -14.26937 -14.09326 -13.93453 -13.63900 -13.62356 -13.43729 -13.22329 -12.95560 -12.58079 -12.53051 -12.22694 -11.94220 -11.82936 -11.77883 -11.66423 -11.42064 -11.27726 -11.22119 -11.07720 -10.96094 -10.82950 -10.80233 -10.21486 -10.04894 -10.01753 -9.93007 -9.68901 -9.54613 -8.98572 -8.62647 -6.85972 -5.73677 -3.07459 2.60717 3.10927 3.38044 3.42437 3.43563 3.43782 3.61446 3.82540 4.00334 4.46583 4.54722 4.60667 4.64904 4.78537 4.94324 5.01247 5.06083 5.13369 5.17883 5.23723 5.27075 5.30478 5.43231 5.48362 5.50504 5.53826 5.65665 5.73107 5.82673 5.85756 5.95555 5.99601 6.08096 6.15439 6.25620 6.42591 6.45755 6.53747 6.59822 6.73250 6.91331 7.50732 7.53663 7.61729 7.81039 8.20354 8.23597 9.19468 9.79865 10.45925 11.37784 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.002033 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.228362 B =13770.796617 C =14602.846968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.067 0.933 4 C 0.183 3.817 5 N -0.607 5.607 6 C -0.230 4.230 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.921 5.921 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.142 3.858 15 C -0.113 4.113 16 H 0.080 0.920 17 C 0.132 3.868 18 N -0.725 5.725 19 C 0.511 3.489 20 O -0.544 6.544 21 C -0.137 4.137 22 C -0.072 4.072 23 H 0.095 0.905 24 C -0.116 4.116 25 C -0.162 4.162 26 C 0.280 3.720 27 F -0.200 7.200 28 F -0.202 7.202 29 C -0.162 4.162 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.253 0.747 36 H 0.018 0.982 37 H 0.035 0.965 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.402 0.598 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.267 3.314 23.105 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.131 4.131 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.016 3.984 15 C -0.133 4.133 16 H 0.098 0.902 17 C 0.009 3.991 18 N -0.376 5.376 19 C 0.297 3.703 20 O -0.421 6.421 21 C -0.177 4.177 22 C -0.091 4.091 23 H 0.113 0.887 24 C -0.153 4.153 25 C -0.200 4.200 26 C 0.244 3.756 27 F -0.181 7.181 28 F -0.183 7.183 29 C -0.200 4.200 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.236 0.764 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.374 4.081 22.973 23.453 hybrid contribution 0.677 -1.230 -0.520 1.497 sum -1.698 2.852 22.453 22.697 Atomic orbital electron populations 1.21688 0.95304 1.01610 1.00542 1.22440 0.95148 0.99113 0.96366 0.91446 1.21227 0.89088 0.93071 0.90736 1.44464 1.32584 1.51544 1.04692 1.18997 1.07643 1.17866 0.91317 0.90566 1.24806 0.98417 1.00314 0.96909 1.69948 1.28675 1.45509 1.12749 0.86202 0.79497 0.80485 0.79576 1.21191 1.21592 1.21181 1.21577 0.93012 0.96971 0.86850 1.22677 0.99366 0.98052 0.93157 0.90202 1.21389 1.00064 0.93745 0.83912 1.46119 1.69778 1.12280 1.09434 1.20537 0.77151 0.88513 0.84115 1.90682 1.51436 1.15279 1.84750 1.21748 1.03983 0.98898 0.93047 1.21683 0.98148 0.97523 0.91767 0.88707 1.22619 0.96644 1.03044 0.93017 1.23410 1.00255 0.97858 0.98476 1.21876 0.83731 0.85541 0.84501 1.93015 1.76605 1.62636 1.85838 1.93011 1.67473 1.87562 1.70224 1.23261 1.01933 1.02155 0.92642 0.93695 0.92764 0.92718 0.93307 0.94059 0.93684 0.96408 0.94674 0.91706 0.91449 0.76412 0.88539 0.88386 0.88566 0.90824 0.89044 0.88375 0.88475 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.16 37.15 0.34 -1.67 16 2 C -0.11 -1.95 3.02 -88.79 -0.27 -2.21 16 3 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 4 C 0.18 4.31 4.97 -3.06 -0.02 4.29 16 5 N -0.61 -15.04 3.39 -170.07 -0.58 -15.62 16 6 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 7 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -26.71 10.31 55.49 0.57 -26.13 16 10 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.14 2.75 6.65 -2.53 -0.02 2.73 16 15 C -0.11 -1.77 2.50 -88.47 -0.22 -1.99 16 16 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 17 C 0.13 1.78 5.13 -4.04 -0.02 1.76 16 18 N -0.73 -8.03 5.50 -60.30 -0.33 -8.37 16 19 C 0.51 5.63 7.63 -10.98 -0.08 5.55 16 20 O -0.54 -7.83 14.61 5.56 0.08 -7.75 16 21 C -0.14 -0.98 5.05 -27.88 -0.14 -1.12 16 22 C -0.07 -0.54 2.45 -88.96 -0.22 -0.76 16 23 H 0.09 0.81 7.96 -51.93 -0.41 0.39 16 24 C -0.12 -0.90 5.71 -24.66 -0.14 -1.04 16 25 C -0.16 -1.17 6.40 -24.99 -0.16 -1.33 16 26 C 0.28 2.33 2.58 -25.61 -0.07 2.27 16 27 F -0.20 -1.96 17.04 2.25 0.04 -1.92 16 28 F -0.20 -2.00 17.04 2.25 0.04 -1.96 16 29 C -0.16 -1.08 6.07 -25.62 -0.16 -1.23 16 30 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.85 8.06 -51.93 -0.42 0.43 16 33 H 0.05 1.27 7.01 -51.93 -0.36 0.90 16 34 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.02 0.36 7.91 -51.93 -0.41 -0.05 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.07 1.00 7.96 -51.93 -0.41 0.58 16 40 H 0.40 3.72 8.47 -40.82 -0.35 3.37 16 41 H 0.10 0.54 8.06 -51.93 -0.42 0.12 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.90 7.17 -51.93 -0.37 0.52 16 44 H 0.07 0.54 8.00 -51.93 -0.42 0.12 16 45 H 0.09 0.60 8.11 -51.93 -0.42 0.17 16 46 H 0.10 0.66 8.12 -51.93 -0.42 0.23 16 47 H 0.10 0.55 7.71 -51.93 -0.40 0.15 16 48 H 0.10 0.58 8.02 -51.93 -0.42 0.17 16 LS Contribution 384.76 15.07 5.80 5.80 Total: -1.00 -31.87 384.76 -8.93 -40.81 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.11 Total: -0.11 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.42 Total: -1.52 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.34 Total: -50.12 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.08 Total: -7.75 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.08 Total: -3.88 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.87 -8.93 -40.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102031756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.831 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds