Wall clock time and date at job start Tue Mar 31 2020 17:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 110.78636 * 2 1 4 4 C 1.54323 * 110.72173 * 236.76126 * 2 1 3 5 5 N 1.47029 * 107.27090 * 219.44685 * 4 2 1 6 6 C 1.36941 * 125.64502 * 178.98496 * 5 4 2 7 7 H 1.07998 * 119.99854 * 179.97438 * 6 5 4 8 8 C 1.38811 * 119.99975 * 359.97438 * 6 5 4 9 9 N 1.31617 * 120.00455 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99745 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47446 * 59.99722 * 10 8 6 12 12 H 1.48498 * 109.47349 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46908 * 299.99915 * 10 8 6 14 14 C 1.47420 * 108.70263 * 358.93851 * 5 4 2 15 15 C 1.54911 * 104.83532 * 24.12965 * 14 5 4 16 16 H 1.09005 * 111.03425 * 81.07859 * 15 14 5 17 17 C 1.52997 * 111.00485 * 204.91496 * 15 14 5 18 18 N 1.46497 * 109.46983 * 287.19711 * 17 15 14 19 19 C 1.34780 * 119.99566 * 180.02562 * 18 17 15 20 20 O 1.21280 * 120.00423 * 359.97438 * 19 18 17 21 21 C 1.50701 * 119.99795 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47212 * 179.97438 * 21 19 18 23 23 H 1.08999 * 110.43445 * 305.70040 * 22 21 19 24 24 C 1.54893 * 110.48646 * 68.23822 * 22 21 19 25 25 C 1.55031 * 102.68366 * 156.51972 * 24 22 21 26 26 C 1.54273 * 104.27952 * 322.23584 * 25 24 22 27 27 F 1.39904 * 110.02918 * 264.23508 * 26 25 24 28 28 F 1.39898 * 110.03045 * 142.80555 * 26 25 24 29 29 C 1.53872 * 106.59741 * 23.51687 * 26 25 24 30 30 H 1.09002 * 109.47166 * 296.75829 * 1 2 3 31 31 H 1.09004 * 109.47160 * 56.75877 * 1 2 3 32 32 H 1.08993 * 109.47316 * 176.76384 * 1 2 3 33 33 H 1.09001 * 109.87923 * 338.85770 * 4 2 1 34 34 H 1.08997 * 109.88550 * 100.02642 * 4 2 1 35 35 H 0.97000 * 120.00350 * 180.02562 * 9 8 6 36 36 H 1.09000 * 110.36464 * 265.29047 * 14 5 4 37 37 H 1.09001 * 110.36269 * 142.96665 * 14 5 4 38 38 H 1.09001 * 109.46832 * 167.19527 * 17 15 14 39 39 H 1.09002 * 109.47153 * 47.19718 * 17 15 14 40 40 H 0.96995 * 120.00423 * 359.97438 * 18 17 15 41 41 H 1.09002 * 109.47060 * 299.99722 * 21 19 18 42 42 H 1.09001 * 109.47380 * 59.99809 * 21 19 18 43 43 H 1.08993 * 110.75740 * 274.93579 * 24 22 21 44 44 H 1.08996 * 110.75035 * 38.30740 * 24 22 21 45 45 H 1.09001 * 110.52513 * 203.49237 * 25 24 22 46 46 H 1.08994 * 110.48065 * 80.95792 * 25 24 22 47 47 H 1.08999 * 110.03084 * 240.71409 * 29 26 25 48 48 H 1.09003 * 110.03256 * 119.28408 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 3.2445 -1.5508 -0.7389 6 6 4.0044 -2.3969 -1.5018 7 1 4.8467 -2.9104 -1.0625 8 6 3.6918 -2.5945 -2.8398 9 7 2.6649 -1.9691 -3.3751 10 14 4.7280 -3.7492 -3.8802 11 1 4.6856 -5.1141 -3.2964 12 1 4.1900 -3.7862 -5.2638 13 1 6.1319 -3.2658 -3.9072 14 6 3.4632 -1.2498 0.6876 15 6 2.0789 -0.7955 1.2139 16 1 1.4447 -1.6533 1.4380 17 6 2.2277 0.1079 2.4396 18 7 2.6328 -0.6981 3.5939 19 6 2.8249 -0.1108 4.7918 20 8 2.6630 1.0849 4.9139 21 6 3.2421 -0.9398 5.9791 22 6 3.3909 -0.0364 7.2049 23 1 4.0703 0.7882 6.9897 24 6 2.0092 0.5023 7.6522 25 6 2.2423 0.8370 9.1479 26 6 3.1637 -0.2931 9.6516 27 9 2.4015 -1.3015 10.2512 28 9 4.0904 0.2165 10.5673 29 6 3.8939 -0.8484 8.4162 30 1 -0.3633 0.4627 0.9176 31 1 -0.3634 0.5633 -0.8595 32 1 -0.3633 -1.0259 -0.0580 33 1 1.3129 -1.4758 -1.5775 34 1 2.3741 -0.1024 -1.9977 35 1 2.4463 -2.1075 -4.3100 36 1 4.1931 -0.4479 0.7985 37 1 3.7959 -2.1427 1.2169 38 1 1.2748 0.5928 2.6514 39 1 2.9853 0.8663 2.2422 40 1 2.7619 -1.6544 3.4964 41 1 2.4850 -1.6988 6.1764 42 1 4.1954 -1.4240 5.7672 43 1 1.7435 1.3978 7.0906 44 1 1.2422 -0.2646 7.5439 45 1 1.2981 0.8307 9.6925 46 1 2.7341 1.8043 9.2500 47 1 3.6545 -1.9035 8.2839 48 1 4.9705 -0.7208 8.5301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102031756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:32 Heat of formation + Delta-G solvation = -159.339232 kcal Electronic energy + Delta-G solvation = -28415.949478 eV Core-core repulsion = 24140.071804 eV Total energy + Delta-G solvation = -4275.877674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.89862 -47.98898 -40.93663 -39.65587 -38.23633 -35.94149 -34.62698 -32.54032 -32.38459 -30.66521 -29.59747 -27.88633 -27.05573 -26.00626 -24.29950 -22.23958 -21.88997 -21.54227 -21.13913 -20.51864 -18.89465 -18.66063 -17.96047 -17.68921 -17.21407 -16.87412 -16.54994 -16.36217 -15.94669 -15.59947 -15.28807 -15.18349 -14.88982 -14.78597 -14.48265 -14.34484 -14.24193 -14.12834 -14.06872 -13.42294 -13.38059 -13.09362 -13.03489 -12.87395 -12.82072 -12.63209 -12.49166 -12.41528 -12.31595 -11.96224 -11.84194 -11.80673 -11.69455 -11.55038 -11.52246 -11.37212 -11.33389 -10.70505 -10.64672 -9.96416 -8.88172 -7.83522 -5.19109 1.46181 1.49213 1.55456 1.77660 2.27472 2.50291 2.82208 3.01977 3.22764 3.34298 3.42685 3.64274 3.75637 3.91744 3.96624 3.98484 4.02462 4.07761 4.26014 4.37310 4.39641 4.46066 4.51959 4.54563 4.62930 4.72084 4.76089 4.78665 4.84642 4.89634 4.90974 4.94506 4.99579 5.09902 5.10826 5.18636 5.24336 5.36160 5.38100 5.44352 5.48370 5.57533 5.73056 5.83181 6.21628 6.67442 7.11699 7.37065 7.79905 8.44323 9.26455 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.002033 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.228362 B =13770.796617 C =14602.846968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.072 0.928 4 C 0.191 3.809 5 N -0.630 5.630 6 C -0.242 4.242 7 H 0.084 0.916 8 C -0.069 4.069 9 N -0.952 5.952 10 Si 0.978 3.022 11 H -0.274 1.274 12 H -0.297 1.297 13 H -0.279 1.279 14 C 0.138 3.862 15 C -0.089 4.089 16 H 0.090 0.910 17 C 0.146 3.854 18 N -0.721 5.721 19 C 0.509 3.491 20 O -0.580 6.580 21 C -0.129 4.129 22 C -0.070 4.070 23 H 0.081 0.919 24 C -0.114 4.114 25 C -0.159 4.159 26 C 0.271 3.729 27 F -0.209 7.209 28 F -0.213 7.213 29 C -0.153 4.153 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.016 0.984 34 H -0.003 1.003 35 H 0.246 0.754 36 H 0.016 0.984 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.413 0.587 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.113 0.887 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 2.261 25.094 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.090 0.910 4 C 0.066 3.934 5 N -0.356 5.356 6 C -0.371 4.371 7 H 0.101 0.899 8 C -0.262 4.262 9 N -0.601 5.601 10 Si 0.806 3.194 11 H -0.200 1.200 12 H -0.223 1.223 13 H -0.205 1.205 14 C 0.013 3.987 15 C -0.109 4.109 16 H 0.108 0.892 17 C 0.021 3.979 18 N -0.373 5.373 19 C 0.297 3.703 20 O -0.460 6.460 21 C -0.169 4.169 22 C -0.089 4.089 23 H 0.099 0.901 24 C -0.151 4.151 25 C -0.197 4.197 26 C 0.235 3.765 27 F -0.190 7.190 28 F -0.194 7.194 29 C -0.191 4.191 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.034 0.966 34 H 0.015 0.985 35 H 0.055 0.945 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.249 0.751 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.131 0.869 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.150 3.009 25.007 25.279 hybrid contribution 0.645 -0.858 -1.102 1.539 sum -1.505 2.150 23.905 24.049 Atomic orbital electron populations 1.21630 0.93014 1.01645 1.02131 1.22317 0.96953 0.98508 0.94451 0.90960 1.20983 0.88141 0.91918 0.92321 1.44810 1.32612 1.51230 1.06986 1.19432 1.07904 1.17800 0.91936 0.89851 1.25665 0.99869 1.02320 0.98308 1.70186 1.30356 1.47097 1.12421 0.85163 0.77965 0.78888 0.77383 1.20017 1.22292 1.20483 1.21769 0.95128 0.97511 0.84311 1.22466 0.96876 0.98316 0.93219 0.89216 1.21073 1.00117 0.93004 0.83680 1.46035 1.69683 1.12704 1.08867 1.21193 0.76067 0.88349 0.84688 1.90679 1.52942 1.17110 1.85289 1.21785 1.05760 0.98566 0.90759 1.21626 0.97607 0.97393 0.92310 0.90063 1.22564 0.97124 1.02501 0.92915 1.23399 1.00416 0.97664 0.98252 1.22171 0.83884 0.85727 0.84688 1.92996 1.76872 1.63024 1.86101 1.92988 1.67895 1.87752 1.70785 1.23217 1.02118 1.02709 0.91085 0.90546 0.92916 0.93271 0.96589 0.98456 0.94506 0.96661 0.93154 0.90980 0.92814 0.75070 0.86088 0.86195 0.90365 0.90094 0.88469 0.88202 0.86897 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.16 71.98 0.66 -2.97 16 2 C -0.10 -3.54 3.02 -9.61 -0.03 -3.57 16 3 H 0.07 2.43 8.04 -2.39 -0.02 2.41 16 4 C 0.19 9.28 4.97 86.73 0.43 9.71 16 5 N -0.63 -31.59 3.39 -691.98 -2.35 -33.94 16 6 C -0.24 -13.33 10.28 84.03 0.86 -12.46 16 7 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 8 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 9 N -0.95 -57.19 10.31 21.65 0.22 -56.96 16 10 Si 0.98 45.32 29.55 68.60 2.03 47.35 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 C 0.14 5.16 6.65 86.86 0.58 5.74 16 15 C -0.09 -2.63 2.50 -9.40 -0.02 -2.66 16 16 H 0.09 2.53 8.05 -2.38 -0.02 2.51 16 17 C 0.15 3.57 5.13 86.38 0.44 4.01 16 18 N -0.72 -13.86 5.50 -463.06 -2.55 -16.40 16 19 C 0.51 9.91 7.63 87.66 0.67 10.58 16 20 O -0.58 -15.82 14.61 -3.03 -0.04 -15.87 16 21 C -0.13 -1.41 5.05 29.85 0.15 -1.26 16 22 C -0.07 -0.89 2.45 -9.72 -0.02 -0.91 16 23 H 0.08 1.27 7.96 -2.39 -0.02 1.25 16 24 C -0.11 -1.57 5.71 31.94 0.18 -1.39 16 25 C -0.16 -2.08 6.40 31.72 0.20 -1.88 16 26 C 0.27 4.06 2.58 31.32 0.08 4.14 16 27 F -0.21 -3.72 17.04 44.97 0.77 -2.96 16 28 F -0.21 -3.98 17.04 44.97 0.77 -3.21 16 29 C -0.15 -1.64 6.07 31.32 0.19 -1.45 16 30 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.05 1.46 8.06 -2.39 -0.02 1.44 16 33 H 0.02 0.86 7.01 -2.39 -0.02 0.85 16 34 H 0.00 -0.16 7.51 -2.39 -0.02 -0.18 16 35 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 36 H 0.02 0.60 7.91 -2.39 -0.02 0.58 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 39 H 0.05 1.50 7.96 -2.39 -0.02 1.48 16 40 H 0.41 6.16 8.47 -92.71 -0.79 5.37 16 41 H 0.12 0.80 8.06 -2.39 -0.02 0.78 16 42 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.08 1.40 7.17 -2.39 -0.02 1.38 16 44 H 0.08 0.99 8.00 -2.39 -0.02 0.97 16 45 H 0.10 1.14 8.11 -2.39 -0.02 1.12 16 46 H 0.10 1.25 8.12 -2.39 -0.02 1.23 16 47 H 0.11 0.87 7.71 -2.39 -0.02 0.86 16 48 H 0.10 0.98 8.02 -2.39 -0.02 0.96 16 Total: -1.00 -71.57 384.76 3.85 -67.72 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.16 Total: 12.04 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 4.84 Total: 2.23 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -4.67 Total: -107.31 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.04 Total: -15.87 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 1.53 Total: -6.17 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -71.57 3.85 -67.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102031756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.620 kcal (2) G-P(sol) polarization free energy of solvation -71.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds