Wall clock time and date at job start Tue Mar 31 2020 17:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.36939 * 125.64917 * 204.16150 * 5 4 2 7 7 H 1.08004 * 119.99851 * 179.97438 * 6 5 4 8 8 C 1.38815 * 120.00106 * 359.96353 * 6 5 4 9 9 N 1.31618 * 119.99789 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00098 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47403 * 59.99350 * 10 8 6 12 12 H 1.48502 * 109.47306 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47124 * 299.99690 * 10 8 6 14 14 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 15 15 C 1.54322 * 107.27336 * 358.94171 * 14 5 4 16 16 H 1.09002 * 110.71963 * 96.17078 * 15 14 5 17 17 C 1.53001 * 110.71941 * 219.26699 * 15 14 5 18 18 N 1.46496 * 109.47222 * 291.15682 * 17 15 14 19 19 C 1.34777 * 119.99966 * 180.02562 * 18 17 15 20 20 O 1.21279 * 120.00141 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.00165 * 180.02562 * 19 18 17 22 22 C 1.52995 * 110.43625 * 59.29013 * 21 19 18 23 23 F 1.39905 * 109.47239 * 60.70534 * 22 21 19 24 24 F 1.39905 * 109.47241 * 180.70405 * 22 21 19 25 25 C 1.54893 * 110.48401 * 296.75261 * 21 19 18 26 26 C 1.55243 * 102.58659 * 279.18964 * 25 21 19 27 27 C 1.54270 * 104.22805 * 322.08118 * 26 25 21 28 28 C 1.53872 * 106.60060 * 23.61524 * 27 26 25 29 29 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 30 30 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 31 31 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 32 32 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 33 33 H 1.09009 * 110.46209 * 323.79974 * 4 2 1 34 34 H 0.96996 * 119.99991 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.88222 * 239.52595 * 14 5 4 36 36 H 1.09004 * 109.88300 * 118.35961 * 14 5 4 37 37 H 1.08999 * 109.47061 * 51.15825 * 17 15 14 38 38 H 1.09006 * 109.46767 * 171.15478 * 17 15 14 39 39 H 0.97003 * 120.00294 * 359.97438 * 18 17 15 40 40 H 1.08995 * 109.47599 * 300.70569 * 22 21 19 41 41 H 1.09000 * 110.75705 * 37.57550 * 25 21 19 42 42 H 1.08999 * 110.75851 * 160.94928 * 25 21 19 43 43 H 1.09001 * 110.46779 * 203.39451 * 26 25 21 44 44 H 1.08995 * 110.58385 * 80.82625 * 26 25 21 45 45 H 1.08995 * 110.03081 * 264.32415 * 27 26 25 46 46 H 1.08996 * 110.06946 * 142.92118 * 27 26 25 47 47 H 1.09001 * 110.03061 * 240.71846 * 28 27 26 48 48 H 1.08997 * 110.07750 * 119.30472 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4644 -1.5655 -1.6073 7 1 5.4131 -1.8751 -1.1943 8 6 4.2964 -1.4946 -2.9835 9 7 3.1401 -1.1179 -3.4867 10 14 5.7115 -1.9336 -4.1209 11 1 6.1209 -3.3409 -3.8815 12 1 5.2784 -1.7779 -5.5328 13 1 6.8603 -1.0315 -3.8528 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 6 2.2349 0.0839 2.4364 18 7 2.7054 -0.7207 3.5665 19 6 2.9091 -0.1426 4.7668 20 8 2.7033 1.0439 4.9112 21 6 3.3938 -0.9701 5.9293 22 6 4.7408 -1.6166 5.6001 23 9 5.6868 -0.6183 5.3434 24 9 5.1637 -2.3918 6.6852 25 6 2.3486 -2.0525 6.2972 26 6 1.3239 -1.2572 7.1502 27 6 2.1915 -0.2848 7.9759 28 6 3.5074 -0.1023 7.1997 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 0.5732 -0.8529 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1559 -0.1720 -2.0837 33 1 1.4524 -1.6704 -1.4044 34 1 3.0228 -1.0680 -4.4483 35 1 4.2426 -0.5998 1.0598 36 1 3.6650 -2.2895 1.0399 37 1 2.9555 0.8748 2.2284 38 1 1.2699 0.5271 2.6827 39 1 2.8697 -1.6697 3.4512 40 1 4.6341 -2.2508 4.7201 41 1 1.8781 -2.4557 5.4005 42 1 2.8066 -2.8476 6.8854 43 1 0.7725 -1.9290 7.8080 44 1 0.6376 -0.7049 6.5083 45 1 2.3938 -0.7084 8.9596 46 1 1.6833 0.6738 8.0799 47 1 4.3485 -0.4374 7.8066 48 1 3.6384 0.9446 6.9261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102275356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:50 Heat of formation + Delta-G solvation = -134.181452 kcal Electronic energy + Delta-G solvation = -29932.210047 eV Core-core repulsion = 25657.423296 eV Total energy + Delta-G solvation = -4274.786751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.26110 -47.21801 -40.54730 -38.31605 -37.18998 -34.84481 -33.04487 -31.26103 -30.78966 -29.34837 -28.85471 -26.06643 -25.25164 -25.09899 -23.28756 -22.19381 -20.88994 -20.03324 -19.87718 -19.11766 -18.22665 -17.40152 -17.30512 -16.84481 -16.35544 -16.01587 -15.63312 -15.01814 -14.87041 -14.38987 -14.10390 -14.03707 -13.78763 -13.74566 -13.52895 -13.36614 -13.15739 -12.78011 -12.72421 -12.66195 -11.99849 -11.84671 -11.64844 -11.59120 -11.51230 -11.48178 -11.42662 -11.19675 -10.95110 -10.91408 -10.80560 -10.71509 -10.30339 -10.09870 -10.01750 -9.93869 -9.76877 -9.42420 -9.09605 -8.67802 -6.87056 -5.68300 -3.10301 2.34049 2.94352 3.38691 3.38723 3.43134 3.44236 3.79061 3.90961 4.06576 4.42023 4.46283 4.55800 4.70035 4.80128 5.02758 5.05714 5.08853 5.17444 5.19624 5.24225 5.32481 5.40087 5.46282 5.53264 5.61496 5.66639 5.70340 5.81958 5.83373 5.87335 6.00516 6.04845 6.08116 6.15038 6.20791 6.33318 6.48032 6.54798 6.55752 6.73881 6.89312 7.35097 7.49502 7.59500 7.83142 8.04577 8.33264 9.19017 9.79811 10.44269 11.35371 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016394 B = 0.003092 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.481872 B = 9054.476857 C =10204.727540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.604 5.604 6 C -0.225 4.225 7 H 0.076 0.924 8 C -0.010 4.010 9 N -0.922 5.922 10 Si 0.915 3.085 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.141 3.859 15 C -0.111 4.111 16 H 0.077 0.923 17 C 0.133 3.867 18 N -0.722 5.722 19 C 0.531 3.469 20 O -0.523 6.523 21 C -0.140 4.140 22 C 0.278 3.722 23 F -0.195 7.195 24 F -0.196 7.196 25 C -0.111 4.111 26 C -0.122 4.122 27 C -0.119 4.119 28 C -0.107 4.107 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.013 0.987 34 H 0.253 0.747 35 H 0.024 0.976 36 H 0.017 0.983 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.399 0.601 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.537 -1.821 20.955 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.035 3.965 5 N -0.330 5.330 6 C -0.353 4.353 7 H 0.094 0.906 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.212 1.212 12 H -0.215 1.215 13 H -0.211 1.211 14 C 0.014 3.986 15 C -0.130 4.130 16 H 0.095 0.905 17 C 0.010 3.990 18 N -0.373 5.373 19 C 0.315 3.685 20 O -0.398 6.398 21 C -0.144 4.144 22 C 0.224 3.776 23 F -0.176 7.176 24 F -0.177 7.177 25 C -0.149 4.149 26 C -0.159 4.159 27 C -0.156 4.156 28 C -0.145 4.145 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.031 0.969 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.035 0.965 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.233 0.767 40 H 0.131 0.869 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.598 -0.951 20.817 21.340 hybrid contribution 0.991 -0.817 -0.646 1.437 sum -3.608 -1.767 20.172 20.568 Atomic orbital electron populations 1.21651 0.95463 1.01411 1.00681 1.22601 0.94607 0.99553 0.96317 0.90994 1.21984 0.84018 0.95874 0.94664 1.44465 1.10546 1.79028 0.98935 1.19026 0.91036 1.38038 0.87225 0.90590 1.24783 0.97276 1.01874 0.96620 1.69779 1.22385 1.53684 1.11174 0.86155 0.81245 0.78181 0.79924 1.21222 1.21546 1.21121 1.21341 0.93431 0.97009 0.86787 1.22505 0.98676 0.98175 0.93622 0.90487 1.21504 0.99670 0.93873 0.83993 1.46087 1.68053 1.13093 1.10083 1.19687 0.77995 0.87830 0.83005 1.90696 1.50777 1.15115 1.83206 1.22855 0.95130 0.98762 0.97631 1.21645 0.84734 0.83155 0.88097 1.93042 1.67171 1.63016 1.94335 1.92981 1.91133 1.75361 1.58263 1.22674 0.94989 0.96103 1.01108 1.22395 0.97403 0.97754 0.98370 1.22066 0.95123 0.99871 0.98562 1.22113 0.98792 1.01097 0.92504 0.93686 0.92620 0.92955 0.87611 0.96888 0.93647 0.95772 0.96532 0.91031 0.91403 0.76682 0.86871 0.90162 0.89153 0.90810 0.91212 0.91470 0.91225 0.90592 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.31 37.16 0.35 -1.63 16 2 C -0.11 -1.96 3.09 -88.47 -0.27 -2.23 16 3 H 0.07 1.31 8.05 -51.93 -0.42 0.90 16 4 C 0.16 3.72 5.36 -2.53 -0.01 3.70 16 5 N -0.60 -15.02 3.39 -170.07 -0.58 -15.60 16 6 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 7 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 8 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 9 N -0.92 -26.46 10.09 55.49 0.56 -25.90 16 10 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.14 2.74 6.64 -3.07 -0.02 2.72 16 15 C -0.11 -1.73 2.45 -88.79 -0.22 -1.95 16 16 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 17 C 0.13 1.84 5.01 -4.04 -0.02 1.82 16 18 N -0.72 -8.50 5.14 -60.29 -0.31 -8.81 16 19 C 0.53 6.73 6.09 -10.99 -0.07 6.66 16 20 O -0.52 -8.50 15.43 5.56 0.09 -8.42 16 21 C -0.14 -1.38 0.44 -154.00 -0.07 -1.45 16 22 C 0.28 2.76 4.27 37.15 0.16 2.92 16 23 F -0.19 -2.53 16.90 2.25 0.04 -2.49 16 24 F -0.20 -1.98 15.80 2.25 0.04 -1.94 16 25 C -0.11 -0.83 5.79 -24.54 -0.14 -0.97 16 26 C -0.12 -0.94 6.62 -24.88 -0.16 -1.10 16 27 C -0.12 -0.99 6.80 -25.61 -0.17 -1.16 16 28 C -0.11 -1.09 5.50 -25.61 -0.14 -1.23 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 32 H 0.11 2.83 5.87 -51.93 -0.31 2.52 16 33 H 0.01 0.33 7.99 -51.92 -0.41 -0.09 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 1.13 8.00 -51.93 -0.42 0.72 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.40 3.81 7.60 -40.82 -0.31 3.50 16 40 H 0.11 0.86 7.59 -51.93 -0.39 0.47 16 41 H 0.08 0.52 7.63 -51.93 -0.40 0.13 16 42 H 0.09 0.59 7.42 -51.93 -0.39 0.20 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.73 7.29 -51.93 -0.38 0.35 16 48 H 0.09 1.11 6.86 -51.93 -0.36 0.75 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -31.69 380.16 -8.45 -40.14 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.94 Total: 1.05 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.05 Total: -0.60 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.33 Total: -50.31 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.07 Total: -4.43 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.69 -8.45 -40.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102275356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.044 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds