Wall clock time and date at job start Tue Mar 31 2020 17:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.36939 * 125.64917 * 204.16150 * 5 4 2 7 7 H 1.08004 * 119.99851 * 179.97438 * 6 5 4 8 8 C 1.38815 * 120.00106 * 359.96353 * 6 5 4 9 9 N 1.31618 * 119.99789 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00098 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47403 * 59.99350 * 10 8 6 12 12 H 1.48502 * 109.47306 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47124 * 299.99690 * 10 8 6 14 14 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 15 15 C 1.54322 * 107.27336 * 358.94171 * 14 5 4 16 16 H 1.09002 * 110.71963 * 96.17078 * 15 14 5 17 17 C 1.53001 * 110.71941 * 219.26699 * 15 14 5 18 18 N 1.46496 * 109.47222 * 291.15682 * 17 15 14 19 19 C 1.34777 * 119.99966 * 180.02562 * 18 17 15 20 20 O 1.21279 * 120.00141 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.00165 * 180.02562 * 19 18 17 22 22 C 1.52995 * 110.43625 * 59.29013 * 21 19 18 23 23 F 1.39905 * 109.47239 * 60.70534 * 22 21 19 24 24 F 1.39905 * 109.47241 * 180.70405 * 22 21 19 25 25 C 1.54893 * 110.48401 * 296.75261 * 21 19 18 26 26 C 1.55243 * 102.58659 * 279.18964 * 25 21 19 27 27 C 1.54270 * 104.22805 * 322.08118 * 26 25 21 28 28 C 1.53872 * 106.60060 * 23.61524 * 27 26 25 29 29 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 30 30 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 31 31 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 32 32 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 33 33 H 1.09009 * 110.46209 * 323.79974 * 4 2 1 34 34 H 0.96996 * 119.99991 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.88222 * 239.52595 * 14 5 4 36 36 H 1.09004 * 109.88300 * 118.35961 * 14 5 4 37 37 H 1.08999 * 109.47061 * 51.15825 * 17 15 14 38 38 H 1.09006 * 109.46767 * 171.15478 * 17 15 14 39 39 H 0.97003 * 120.00294 * 359.97438 * 18 17 15 40 40 H 1.08995 * 109.47599 * 300.70569 * 22 21 19 41 41 H 1.09000 * 110.75705 * 37.57550 * 25 21 19 42 42 H 1.08999 * 110.75851 * 160.94928 * 25 21 19 43 43 H 1.09001 * 110.46779 * 203.39451 * 26 25 21 44 44 H 1.08995 * 110.58385 * 80.82625 * 26 25 21 45 45 H 1.08995 * 110.03081 * 264.32415 * 27 26 25 46 46 H 1.08996 * 110.06946 * 142.92118 * 27 26 25 47 47 H 1.09001 * 110.03061 * 240.71846 * 28 27 26 48 48 H 1.08997 * 110.07750 * 119.30472 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4644 -1.5655 -1.6073 7 1 5.4131 -1.8751 -1.1943 8 6 4.2964 -1.4946 -2.9835 9 7 3.1401 -1.1179 -3.4867 10 14 5.7115 -1.9336 -4.1209 11 1 6.1209 -3.3409 -3.8815 12 1 5.2784 -1.7779 -5.5328 13 1 6.8603 -1.0315 -3.8528 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 6 2.2349 0.0839 2.4364 18 7 2.7054 -0.7207 3.5665 19 6 2.9091 -0.1426 4.7668 20 8 2.7033 1.0439 4.9112 21 6 3.3938 -0.9701 5.9293 22 6 4.7408 -1.6166 5.6001 23 9 5.6868 -0.6183 5.3434 24 9 5.1637 -2.3918 6.6852 25 6 2.3486 -2.0525 6.2972 26 6 1.3239 -1.2572 7.1502 27 6 2.1915 -0.2848 7.9759 28 6 3.5074 -0.1023 7.1997 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 0.5732 -0.8529 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1559 -0.1720 -2.0837 33 1 1.4524 -1.6704 -1.4044 34 1 3.0228 -1.0680 -4.4483 35 1 4.2426 -0.5998 1.0598 36 1 3.6650 -2.2895 1.0399 37 1 2.9555 0.8748 2.2284 38 1 1.2699 0.5271 2.6827 39 1 2.8697 -1.6697 3.4512 40 1 4.6341 -2.2508 4.7201 41 1 1.8781 -2.4557 5.4005 42 1 2.8066 -2.8476 6.8854 43 1 0.7725 -1.9290 7.8080 44 1 0.6376 -0.7049 6.5083 45 1 2.3938 -0.7084 8.9596 46 1 1.6833 0.6738 8.0799 47 1 4.3485 -0.4374 7.8066 48 1 3.6384 0.9446 6.9261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102275356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:49 Heat of formation + Delta-G solvation = -152.871418 kcal Electronic energy + Delta-G solvation = -29933.020505 eV Core-core repulsion = 25657.423296 eV Total energy + Delta-G solvation = -4275.597209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.09298 -48.06951 -41.51128 -39.75348 -38.11209 -36.16021 -34.73439 -32.55558 -32.13472 -30.51221 -29.69140 -27.84637 -26.66925 -25.88799 -24.72626 -23.31041 -21.70440 -21.40368 -21.20596 -20.25982 -19.14517 -18.77956 -18.21497 -18.11571 -17.37227 -17.07684 -16.85176 -16.38827 -15.93478 -15.76126 -15.50499 -15.05390 -14.95972 -14.67264 -14.54837 -14.41755 -14.27993 -14.17958 -13.92756 -13.53470 -13.48900 -13.37294 -13.00867 -12.77517 -12.66248 -12.57411 -12.46728 -12.29736 -12.20532 -12.06758 -12.00152 -11.83744 -11.70949 -11.59525 -11.40674 -11.39480 -11.24000 -10.85866 -10.72166 -10.17986 -8.86766 -7.76638 -5.20700 1.37372 1.46446 1.49057 1.55383 1.95985 2.49691 2.60661 3.09407 3.14705 3.28054 3.32519 3.61614 3.69359 3.79520 3.83056 3.89317 3.95583 3.99196 4.15968 4.37035 4.39296 4.41196 4.50745 4.51906 4.62548 4.69299 4.76008 4.79238 4.81504 4.85847 4.97589 5.01256 5.03315 5.10815 5.15878 5.18361 5.21133 5.32320 5.39698 5.41369 5.43060 5.51346 5.73657 5.85858 6.32973 6.40312 7.07868 7.12218 7.80345 8.43419 9.24528 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016394 B = 0.003092 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.481872 B = 9054.476857 C =10204.727540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.063 0.937 4 C 0.163 3.837 5 N -0.629 5.629 6 C -0.240 4.240 7 H 0.079 0.921 8 C -0.066 4.066 9 N -0.947 5.947 10 Si 0.977 3.023 11 H -0.277 1.277 12 H -0.294 1.294 13 H -0.280 1.280 14 C 0.136 3.864 15 C -0.089 4.089 16 H 0.101 0.899 17 C 0.145 3.855 18 N -0.713 5.713 19 C 0.532 3.468 20 O -0.563 6.563 21 C -0.136 4.136 22 C 0.272 3.728 23 F -0.216 7.216 24 F -0.195 7.195 25 C -0.105 4.105 26 C -0.121 4.121 27 C -0.118 4.118 28 C -0.110 4.110 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.066 0.934 33 H -0.008 1.008 34 H 0.246 0.754 35 H 0.018 0.982 36 H 0.032 0.968 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.413 0.587 40 H 0.142 0.858 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.079 0.921 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.087 -3.440 22.817 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.081 0.919 4 C 0.038 3.962 5 N -0.354 5.354 6 C -0.369 4.369 7 H 0.097 0.903 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.806 3.194 11 H -0.203 1.203 12 H -0.220 1.220 13 H -0.206 1.206 14 C 0.011 3.989 15 C -0.108 4.108 16 H 0.119 0.881 17 C 0.021 3.979 18 N -0.364 5.364 19 C 0.317 3.683 20 O -0.441 6.441 21 C -0.140 4.140 22 C 0.219 3.781 23 F -0.197 7.197 24 F -0.176 7.176 25 C -0.142 4.142 26 C -0.159 4.159 27 C -0.155 4.155 28 C -0.148 4.148 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.010 0.990 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.250 0.750 40 H 0.159 0.841 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.075 0.925 45 H 0.103 0.897 46 H 0.078 0.922 47 H 0.098 0.902 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.142 -2.601 22.714 23.433 hybrid contribution 1.202 -0.290 -1.188 1.715 sum -3.940 -2.890 21.526 22.073 Atomic orbital electron populations 1.21600 0.92675 1.02034 1.02138 1.22433 0.96795 0.98290 0.94636 0.91859 1.21749 0.83727 0.94927 0.95831 1.44787 1.10451 1.79053 1.01153 1.19405 0.91994 1.37457 0.88072 0.90307 1.25597 0.99630 1.02518 0.98117 1.70048 1.24044 1.54817 1.10790 0.85170 0.78500 0.78196 0.77576 1.20290 1.21992 1.20593 1.21536 0.95618 0.97749 0.84030 1.22339 0.96471 0.98685 0.93271 0.88127 1.21219 0.99751 0.93075 0.83840 1.45938 1.67575 1.13629 1.09294 1.20113 0.77080 0.87507 0.83561 1.90686 1.52509 1.17007 1.83883 1.22840 0.95918 0.99180 0.96048 1.21979 0.83984 0.83082 0.89100 1.93003 1.68088 1.64137 1.94505 1.92981 1.91088 1.75138 1.58404 1.22761 0.94017 0.95462 1.01995 1.22410 0.97223 0.97782 0.98437 1.22079 0.94172 0.99938 0.99350 1.22115 1.00087 0.99540 0.93089 0.90746 0.92909 0.92503 0.91605 0.98988 0.94385 0.96419 0.94973 0.93196 0.90240 0.75047 0.84052 0.88624 0.87445 0.88653 0.92534 0.89735 0.92190 0.90212 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.31 71.98 0.67 -2.80 16 2 C -0.10 -3.51 3.09 -9.40 -0.03 -3.54 16 3 H 0.06 2.30 8.05 -2.39 -0.02 2.28 16 4 C 0.16 7.74 5.36 86.85 0.47 8.20 16 5 N -0.63 -31.52 3.39 -691.98 -2.35 -33.87 16 6 C -0.24 -13.34 10.27 84.03 0.86 -12.48 16 7 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 8 C -0.07 -3.72 5.49 84.86 0.47 -3.26 16 9 N -0.95 -56.06 10.09 21.65 0.22 -55.84 16 10 Si 0.98 45.47 29.55 68.60 2.03 47.50 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 C 0.14 5.14 6.64 86.73 0.58 5.71 16 15 C -0.09 -2.59 2.45 -9.61 -0.02 -2.61 16 16 H 0.10 2.54 8.04 -2.39 -0.02 2.52 16 17 C 0.14 3.74 5.01 86.38 0.43 4.17 16 18 N -0.71 -15.05 5.14 -463.06 -2.38 -17.43 16 19 C 0.53 12.69 6.09 87.66 0.53 13.22 16 20 O -0.56 -18.15 15.43 -3.03 -0.05 -18.20 16 21 C -0.14 -2.42 0.44 -51.85 -0.02 -2.44 16 22 C 0.27 4.83 4.27 71.98 0.31 5.14 16 23 F -0.22 -5.43 16.90 44.97 0.76 -4.67 16 24 F -0.19 -3.45 15.80 44.97 0.71 -2.74 16 25 C -0.10 -1.20 5.79 32.01 0.19 -1.01 16 26 C -0.12 -1.52 6.62 31.79 0.21 -1.31 16 27 C -0.12 -1.77 6.80 31.32 0.21 -1.55 16 28 C -0.11 -2.14 5.50 31.32 0.17 -1.97 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.51 8.08 -2.38 -0.02 1.49 16 32 H 0.07 3.67 5.87 -2.39 -0.01 3.66 16 33 H -0.01 -0.40 7.99 -2.38 -0.02 -0.42 16 34 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.02 0.70 7.73 -2.39 -0.02 0.68 16 36 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.05 1.54 8.00 -2.39 -0.02 1.52 16 38 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.41 6.45 7.60 -92.71 -0.70 5.75 16 40 H 0.14 1.69 7.59 -2.39 -0.02 1.67 16 41 H 0.10 0.83 7.63 -2.39 -0.02 0.81 16 42 H 0.11 0.93 7.42 -2.39 -0.02 0.91 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.08 1.44 7.29 -2.39 -0.02 1.43 16 48 H 0.06 1.58 6.86 -2.39 -0.02 1.57 16 Total: -1.00 -71.47 380.16 4.21 -67.26 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.25 Total: 14.53 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.02 Total: 3.47 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -4.51 Total: -107.14 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.05 Total: -18.20 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 1.47 Total: -7.41 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -71.47 4.21 -67.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102275356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.613 kcal (2) G-P(sol) polarization free energy of solvation -71.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds