Wall clock time and date at job start Tue Mar 31 2020 17:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.88501 * 2 1 4 4 C 1.54906 * 111.00375 * 236.07603 * 2 1 3 5 5 N 1.47431 * 104.83013 * 204.91793 * 4 2 1 6 6 C 1.36940 * 125.64522 * 204.17223 * 5 4 2 7 7 H 1.07991 * 119.99590 * 161.46463 * 6 5 4 8 8 C 1.38811 * 120.00024 * 341.46597 * 6 5 4 9 9 N 1.31613 * 120.00078 * 157.64412 * 8 6 5 10 10 Si 1.86800 * 120.00111 * 337.63660 * 8 6 5 11 11 H 1.48507 * 109.47050 * 84.53947 * 10 8 6 12 12 H 1.48495 * 109.47204 * 204.53970 * 10 8 6 13 13 H 1.48500 * 109.47264 * 324.54252 * 10 8 6 14 14 C 1.47020 * 108.70212 * 24.12529 * 5 4 2 15 15 C 1.54323 * 107.27270 * 358.94293 * 14 5 4 16 16 H 1.09001 * 110.71876 * 96.16744 * 15 14 5 17 17 C 1.52997 * 110.87121 * 219.37192 * 15 14 5 18 18 N 1.46501 * 109.47297 * 288.61344 * 17 15 14 19 19 C 1.34775 * 120.00082 * 180.02562 * 18 17 15 20 20 O 1.21275 * 119.99978 * 359.97438 * 19 18 17 21 21 C 1.50705 * 119.99693 * 179.97438 * 19 18 17 22 22 C 1.53005 * 109.46819 * 179.97438 * 21 19 18 23 23 H 1.08999 * 110.01935 * 305.70394 * 22 21 19 24 24 C 1.54270 * 110.02779 * 67.09391 * 22 21 19 25 25 C 1.54969 * 104.15395 * 142.86370 * 24 22 21 26 26 C 1.54888 * 102.77892 * 322.10792 * 25 24 22 27 27 C 1.53873 * 110.03035 * 184.31071 * 22 21 19 28 28 F 1.39900 * 110.03331 * 0.02562 * 27 22 21 29 29 F 1.39900 * 110.03507 * 121.38647 * 27 22 21 30 30 H 1.09002 * 109.47084 * 296.12679 * 1 2 3 31 31 H 1.08999 * 109.47210 * 176.12445 * 1 2 3 32 32 H 1.09004 * 109.47011 * 56.11930 * 1 2 3 33 33 H 1.09002 * 110.36657 * 323.74979 * 4 2 1 34 34 H 1.09002 * 110.36750 * 86.07689 * 4 2 1 35 35 H 0.97005 * 120.00705 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.87996 * 239.52150 * 14 5 4 37 37 H 1.08998 * 110.00657 * 118.43508 * 14 5 4 38 38 H 1.09000 * 109.47138 * 48.60903 * 17 15 14 39 39 H 1.08995 * 109.47633 * 168.61117 * 17 15 14 40 40 H 0.97000 * 120.00094 * 359.97438 * 18 17 15 41 41 H 1.09000 * 109.47171 * 299.99897 * 21 19 18 42 42 H 1.08995 * 109.46863 * 60.00207 * 21 19 18 43 43 H 1.09000 * 110.48841 * 261.56359 * 24 22 21 44 44 H 1.08997 * 110.48829 * 24.22104 * 24 22 21 45 45 H 1.09005 * 110.76242 * 203.77476 * 25 24 22 46 46 H 1.08999 * 110.88291 * 80.50082 * 25 24 22 47 47 H 1.09003 * 110.48582 * 279.23748 * 26 25 24 48 48 H 1.08997 * 110.59938 * 156.65299 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8071 -1.2000 5 7 3.4272 -1.2434 -0.7728 6 6 4.4645 -1.5659 -1.6065 7 1 5.4759 -1.5831 -1.2282 8 6 4.2161 -1.8705 -2.9378 9 7 5.1754 -1.7498 -3.8306 10 14 2.5201 -2.4521 -3.4621 11 1 1.6469 -1.2758 -3.7060 12 1 2.6342 -3.2509 -4.7086 13 1 1.9308 -3.2917 -2.3883 14 6 3.4674 -1.2738 0.6966 15 6 2.0861 -0.8074 1.2026 16 1 1.4467 -1.6626 1.4216 17 6 2.2308 0.0876 2.4350 18 7 2.6428 -0.7244 3.5826 19 6 2.8328 -0.1451 4.7846 20 8 2.6632 1.0485 4.9160 21 6 3.2561 -0.9806 5.9652 22 6 3.4009 -0.0855 7.1977 23 1 4.0763 0.7420 6.9806 24 6 2.0204 0.4566 7.6221 25 6 2.0748 0.4611 9.1708 26 6 2.8623 -0.8340 9.4897 27 6 3.9363 -0.9054 8.3846 28 9 4.1379 -2.2344 7.9968 29 9 5.1367 -0.3541 8.8453 30 1 -0.3633 0.4525 0.9227 31 1 -0.3633 -1.0253 -0.0695 32 1 -0.3633 0.5729 -0.8532 33 1 1.4519 -1.6710 -1.4017 34 1 2.1560 -0.1728 -2.0836 35 1 5.0020 -1.9630 -4.7609 36 1 4.2426 -0.5993 1.0602 37 1 3.6662 -2.2879 1.0433 38 1 2.9832 0.8524 2.2423 39 1 1.2751 0.5647 2.6519 40 1 2.7781 -1.6792 3.4776 41 1 2.5037 -1.7454 6.1575 42 1 4.2120 -1.4576 5.7487 43 1 1.8742 1.4676 7.2419 44 1 1.2270 -0.2029 7.2704 45 1 1.0707 0.4164 9.5929 46 1 2.6080 1.3378 9.5383 47 1 2.2051 -1.7022 9.4398 48 1 3.3297 -0.7666 10.4720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102281065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:38 Heat of formation + Delta-G solvation = -133.723068 kcal Electronic energy + Delta-G solvation = -28924.754681 eV Core-core repulsion = 24649.987807 eV Total energy + Delta-G solvation = -4274.766874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -49.24134 -47.29015 -40.07726 -38.53083 -37.51079 -34.81415 -33.08033 -32.22872 -31.14626 -29.90036 -28.21446 -26.84725 -25.97691 -25.17835 -22.63205 -21.71359 -21.18376 -20.51925 -20.18583 -19.57757 -18.19598 -17.33975 -16.91925 -16.69081 -16.21676 -15.99302 -15.61175 -15.13246 -15.02675 -14.82132 -14.48815 -14.23897 -14.03084 -13.65997 -13.51630 -13.48542 -13.23092 -12.99435 -12.96326 -12.76494 -12.48076 -12.26323 -12.06779 -11.97278 -11.60381 -11.53294 -11.42365 -11.29361 -11.14301 -11.09908 -10.96131 -10.93312 -10.60303 -10.36580 -10.10439 -9.95694 -9.75594 -9.45229 -9.07894 -8.69654 -7.06089 -5.95967 -3.26459 2.54428 2.97661 3.32881 3.44322 3.45992 3.48155 3.56467 3.82631 3.95996 4.50368 4.53121 4.58614 4.65465 4.76032 4.81513 4.90291 4.93751 4.94506 4.97144 5.05992 5.11874 5.22493 5.30294 5.40194 5.40364 5.47688 5.50227 5.59638 5.62474 5.72036 5.78802 5.87192 5.88426 5.90542 6.02132 6.06371 6.20755 6.32868 6.38217 6.49228 6.62320 6.73240 6.77754 7.42226 7.69806 8.12877 8.30013 8.82144 9.67476 10.16260 11.20207 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.022294 B = 0.002359 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.638200 B =11866.483252 C =12587.198329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.082 0.918 4 C 0.116 3.884 5 N -0.609 5.609 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.021 3.979 9 N -0.908 5.908 10 Si 0.883 3.117 11 H -0.285 1.285 12 H -0.303 1.303 13 H -0.277 1.277 14 C 0.141 3.859 15 C -0.112 4.112 16 H 0.080 0.920 17 C 0.133 3.867 18 N -0.725 5.725 19 C 0.514 3.486 20 O -0.541 6.541 21 C -0.136 4.136 22 C -0.114 4.114 23 H 0.109 0.891 24 C -0.110 4.110 25 C -0.125 4.125 26 C -0.161 4.161 27 C 0.282 3.718 28 F -0.198 7.198 29 F -0.197 7.197 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.027 0.973 34 H 0.059 0.941 35 H 0.263 0.737 36 H 0.034 0.966 37 H 0.028 0.972 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.403 0.597 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.098 0.902 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 2.126 26.232 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.100 0.900 4 C -0.009 4.009 5 N -0.336 5.336 6 C -0.370 4.370 7 H 0.109 0.891 8 C -0.177 4.177 9 N -0.552 5.552 10 Si 0.714 3.286 11 H -0.212 1.212 12 H -0.231 1.231 13 H -0.203 1.203 14 C 0.015 3.985 15 C -0.131 4.131 16 H 0.099 0.901 17 C 0.010 3.990 18 N -0.376 5.376 19 C 0.300 3.700 20 O -0.419 6.419 21 C -0.176 4.176 22 C -0.133 4.133 23 H 0.128 0.872 24 C -0.148 4.148 25 C -0.163 4.163 26 C -0.199 4.199 27 C 0.246 3.754 28 F -0.179 7.179 29 F -0.178 7.178 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.237 0.763 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.116 0.884 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.735 2.915 26.079 27.989 hybrid contribution -0.536 -1.151 -0.582 1.397 sum -10.271 1.765 25.497 27.544 Atomic orbital electron populations 1.21729 0.94994 1.01744 1.01375 1.22310 0.94836 0.99531 0.94993 0.89962 1.22026 0.87279 0.95641 0.95923 1.44749 1.09931 1.78323 1.00568 1.18635 0.86660 1.41396 0.90268 0.89099 1.24997 0.96917 1.00192 0.95594 1.69843 1.33038 1.50618 1.01690 0.86969 0.85606 0.79157 0.76917 1.21156 1.23066 1.20310 1.21396 0.93432 0.98022 0.85629 1.22519 0.98754 0.98190 0.93642 0.90126 1.21407 1.00302 0.93602 0.83719 1.46060 1.69771 1.12486 1.09329 1.20415 0.77132 0.88433 0.84001 1.90693 1.51260 1.15318 1.84622 1.21705 1.04697 0.98640 0.92562 1.22525 1.00451 0.98468 0.91883 0.87238 1.22415 0.94591 1.03315 0.94474 1.22534 1.00803 0.96521 0.96418 1.23358 0.97133 1.01386 0.98040 1.21903 0.82126 0.76536 0.94862 1.92996 1.95781 1.36962 1.92118 1.93025 1.49410 1.85335 1.90039 0.92768 0.92732 0.92524 0.95596 0.92291 0.92695 0.94794 0.95365 0.91047 0.91486 0.76311 0.88069 0.87976 0.89101 0.90882 0.89987 0.90437 0.88383 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.31 37.16 0.35 -1.47 16 2 C -0.10 -1.54 3.09 -88.47 -0.27 -1.81 16 3 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 4 C 0.12 2.47 4.16 -2.53 -0.01 2.46 16 5 N -0.61 -14.51 3.21 -170.07 -0.55 -15.06 16 6 C -0.24 -6.87 10.57 -15.06 -0.16 -7.03 16 7 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 8 C 0.02 0.63 5.43 -17.43 -0.09 0.53 16 9 N -0.91 -28.08 13.97 55.49 0.78 -27.31 16 10 Si 0.88 22.50 24.27 -169.99 -4.13 18.38 16 11 H -0.28 -6.96 6.49 56.52 0.37 -6.59 16 12 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 13 H -0.28 -6.93 6.66 56.52 0.38 -6.55 16 14 C 0.14 2.63 6.76 -3.07 -0.02 2.61 16 15 C -0.11 -1.62 2.42 -88.79 -0.22 -1.83 16 16 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 17 C 0.13 1.70 5.02 -4.04 -0.02 1.68 16 18 N -0.73 -7.94 5.47 -60.30 -0.33 -8.27 16 19 C 0.51 5.84 7.61 -10.98 -0.08 5.76 16 20 O -0.54 -7.85 14.78 5.56 0.08 -7.77 16 21 C -0.14 -1.16 4.18 -27.88 -0.12 -1.28 16 22 C -0.11 -0.99 2.40 -89.50 -0.21 -1.20 16 23 H 0.11 1.11 7.82 -51.93 -0.41 0.70 16 24 C -0.11 -0.82 5.40 -25.03 -0.14 -0.96 16 25 C -0.13 -0.70 6.91 -24.70 -0.17 -0.87 16 26 C -0.16 -0.97 6.40 -25.07 -0.16 -1.13 16 27 C 0.28 2.42 2.53 -25.61 -0.06 2.36 16 28 F -0.20 -1.90 15.46 2.25 0.03 -1.86 16 29 F -0.20 -2.07 17.04 2.25 0.04 -2.04 16 30 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.03 0.58 5.42 -51.93 -0.28 0.29 16 34 H 0.06 1.36 6.63 -51.93 -0.34 1.01 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.03 0.65 7.70 -51.93 -0.40 0.25 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 1.04 7.94 -51.93 -0.41 0.62 16 39 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.40 3.66 8.47 -40.82 -0.35 3.31 16 41 H 0.10 0.68 7.97 -51.93 -0.41 0.26 16 42 H 0.10 0.84 7.78 -51.93 -0.40 0.44 16 43 H 0.09 0.81 7.63 -51.93 -0.40 0.41 16 44 H 0.07 0.51 7.77 -51.93 -0.40 0.10 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.10 0.49 8.12 -51.93 -0.42 0.06 16 48 H 0.09 0.49 8.11 -51.93 -0.42 0.07 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -33.21 377.27 -7.83 -41.04 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -8.05 Total: -0.61 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.39 Total: -2.19 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.10 Total: -50.63 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.08 Total: -7.77 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.07 Total: -3.90 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.13 Total: 18.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.21 -7.83 -41.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102281065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.682 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds