Wall clock time and date at job start Tue Mar 31 2020 17:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.88501 * 2 1 4 4 C 1.54906 * 111.00375 * 236.07603 * 2 1 3 5 5 N 1.47431 * 104.83013 * 204.91793 * 4 2 1 6 6 C 1.36940 * 125.64522 * 204.17223 * 5 4 2 7 7 H 1.07991 * 119.99590 * 161.46463 * 6 5 4 8 8 C 1.38811 * 120.00024 * 341.46597 * 6 5 4 9 9 N 1.31613 * 120.00078 * 157.64412 * 8 6 5 10 10 Si 1.86800 * 120.00111 * 337.63660 * 8 6 5 11 11 H 1.48507 * 109.47050 * 84.53947 * 10 8 6 12 12 H 1.48495 * 109.47204 * 204.53970 * 10 8 6 13 13 H 1.48500 * 109.47264 * 324.54252 * 10 8 6 14 14 C 1.47020 * 108.70212 * 24.12529 * 5 4 2 15 15 C 1.54323 * 107.27270 * 358.94293 * 14 5 4 16 16 H 1.09001 * 110.71876 * 96.16744 * 15 14 5 17 17 C 1.52997 * 110.87121 * 219.37192 * 15 14 5 18 18 N 1.46501 * 109.47297 * 288.61344 * 17 15 14 19 19 C 1.34775 * 120.00082 * 180.02562 * 18 17 15 20 20 O 1.21275 * 119.99978 * 359.97438 * 19 18 17 21 21 C 1.50705 * 119.99693 * 179.97438 * 19 18 17 22 22 C 1.53005 * 109.46819 * 179.97438 * 21 19 18 23 23 H 1.08999 * 110.01935 * 305.70394 * 22 21 19 24 24 C 1.54270 * 110.02779 * 67.09391 * 22 21 19 25 25 C 1.54969 * 104.15395 * 142.86370 * 24 22 21 26 26 C 1.54888 * 102.77892 * 322.10792 * 25 24 22 27 27 C 1.53873 * 110.03035 * 184.31071 * 22 21 19 28 28 F 1.39900 * 110.03331 * 0.02562 * 27 22 21 29 29 F 1.39900 * 110.03507 * 121.38647 * 27 22 21 30 30 H 1.09002 * 109.47084 * 296.12679 * 1 2 3 31 31 H 1.08999 * 109.47210 * 176.12445 * 1 2 3 32 32 H 1.09004 * 109.47011 * 56.11930 * 1 2 3 33 33 H 1.09002 * 110.36657 * 323.74979 * 4 2 1 34 34 H 1.09002 * 110.36750 * 86.07689 * 4 2 1 35 35 H 0.97005 * 120.00705 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.87996 * 239.52150 * 14 5 4 37 37 H 1.08998 * 110.00657 * 118.43508 * 14 5 4 38 38 H 1.09000 * 109.47138 * 48.60903 * 17 15 14 39 39 H 1.08995 * 109.47633 * 168.61117 * 17 15 14 40 40 H 0.97000 * 120.00094 * 359.97438 * 18 17 15 41 41 H 1.09000 * 109.47171 * 299.99897 * 21 19 18 42 42 H 1.08995 * 109.46863 * 60.00207 * 21 19 18 43 43 H 1.09000 * 110.48841 * 261.56359 * 24 22 21 44 44 H 1.08997 * 110.48829 * 24.22104 * 24 22 21 45 45 H 1.09005 * 110.76242 * 203.77476 * 25 24 22 46 46 H 1.08999 * 110.88291 * 80.50082 * 25 24 22 47 47 H 1.09003 * 110.48582 * 279.23748 * 26 25 24 48 48 H 1.08997 * 110.59938 * 156.65299 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8071 -1.2000 5 7 3.4272 -1.2434 -0.7728 6 6 4.4645 -1.5659 -1.6065 7 1 5.4759 -1.5831 -1.2282 8 6 4.2161 -1.8705 -2.9378 9 7 5.1754 -1.7498 -3.8306 10 14 2.5201 -2.4521 -3.4621 11 1 1.6469 -1.2758 -3.7060 12 1 2.6342 -3.2509 -4.7086 13 1 1.9308 -3.2917 -2.3883 14 6 3.4674 -1.2738 0.6966 15 6 2.0861 -0.8074 1.2026 16 1 1.4467 -1.6626 1.4216 17 6 2.2308 0.0876 2.4350 18 7 2.6428 -0.7244 3.5826 19 6 2.8328 -0.1451 4.7846 20 8 2.6632 1.0485 4.9160 21 6 3.2561 -0.9806 5.9652 22 6 3.4009 -0.0855 7.1977 23 1 4.0763 0.7420 6.9806 24 6 2.0204 0.4566 7.6221 25 6 2.0748 0.4611 9.1708 26 6 2.8623 -0.8340 9.4897 27 6 3.9363 -0.9054 8.3846 28 9 4.1379 -2.2344 7.9968 29 9 5.1367 -0.3541 8.8453 30 1 -0.3633 0.4525 0.9227 31 1 -0.3633 -1.0253 -0.0695 32 1 -0.3633 0.5729 -0.8532 33 1 1.4519 -1.6710 -1.4017 34 1 2.1560 -0.1728 -2.0836 35 1 5.0020 -1.9630 -4.7609 36 1 4.2426 -0.5993 1.0602 37 1 3.6662 -2.2879 1.0433 38 1 2.9832 0.8524 2.2423 39 1 1.2751 0.5647 2.6519 40 1 2.7781 -1.6792 3.4776 41 1 2.5037 -1.7454 6.1575 42 1 4.2120 -1.4576 5.7487 43 1 1.8742 1.4676 7.2419 44 1 1.2270 -0.2029 7.2704 45 1 1.0707 0.4164 9.5929 46 1 2.6080 1.3378 9.5383 47 1 2.2051 -1.7022 9.4398 48 1 3.3297 -0.7666 10.4720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102281065.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:35 Heat of formation + Delta-G solvation = -155.276873 kcal Electronic energy + Delta-G solvation = -28925.689324 eV Core-core repulsion = 24649.987807 eV Total energy + Delta-G solvation = -4275.701517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -49.95268 -48.01877 -41.03022 -39.88035 -38.20373 -36.06196 -34.75763 -33.06268 -32.84662 -31.13710 -28.78450 -28.08896 -27.42289 -26.31351 -24.13032 -22.42707 -22.18107 -21.63797 -21.27566 -20.69850 -19.06680 -18.80275 -18.04163 -17.60369 -17.20617 -16.95385 -16.76568 -16.51946 -16.29239 -15.57187 -15.35138 -15.16729 -15.12941 -14.94744 -14.61532 -14.50265 -14.38885 -14.30201 -14.07436 -13.99483 -13.51434 -13.32969 -13.20135 -12.86865 -12.85146 -12.68543 -12.57460 -12.46643 -12.26778 -12.12643 -11.89493 -11.76798 -11.67867 -11.63806 -11.58552 -11.48973 -11.33932 -10.85249 -10.77801 -10.05137 -9.06874 -8.20259 -5.46952 1.29253 1.37023 1.46545 1.65301 2.12283 2.39836 2.79449 2.96887 3.00900 3.23175 3.28738 3.32075 3.64489 3.76261 3.80768 3.86703 3.98905 4.03815 4.23388 4.27389 4.30334 4.36094 4.42735 4.47009 4.51447 4.59871 4.67990 4.70971 4.73723 4.80161 4.81514 4.86612 4.92086 5.03078 5.05900 5.08085 5.09896 5.22029 5.24454 5.32387 5.34055 5.44080 5.51642 5.66291 6.07935 6.56069 6.74822 7.25443 7.52165 8.08777 8.99799 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.022294 B = 0.002359 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.638200 B =11866.483252 C =12587.198329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.079 0.921 4 C 0.108 3.892 5 N -0.630 5.630 6 C -0.237 4.237 7 H 0.055 0.945 8 C -0.040 4.040 9 N -0.958 5.958 10 Si 0.949 3.051 11 H -0.269 1.269 12 H -0.309 1.309 13 H -0.265 1.265 14 C 0.135 3.865 15 C -0.091 4.091 16 H 0.105 0.895 17 C 0.144 3.856 18 N -0.720 5.720 19 C 0.514 3.486 20 O -0.575 6.575 21 C -0.130 4.130 22 C -0.116 4.116 23 H 0.087 0.913 24 C -0.108 4.108 25 C -0.119 4.119 26 C -0.155 4.155 27 C 0.275 3.725 28 F -0.204 7.204 29 F -0.212 7.212 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.034 0.966 35 H 0.263 0.737 36 H 0.023 0.977 37 H 0.036 0.964 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.414 0.586 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.103 0.897 46 H 0.074 0.926 47 H 0.115 0.885 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.160 1.409 28.550 31.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 H 0.098 0.902 4 C -0.017 4.017 5 N -0.357 5.357 6 C -0.366 4.366 7 H 0.073 0.927 8 C -0.234 4.234 9 N -0.605 5.605 10 Si 0.778 3.222 11 H -0.195 1.195 12 H -0.237 1.237 13 H -0.190 1.190 14 C 0.011 3.989 15 C -0.110 4.110 16 H 0.123 0.877 17 C 0.020 3.980 18 N -0.372 5.372 19 C 0.302 3.698 20 O -0.455 6.455 21 C -0.170 4.170 22 C -0.135 4.135 23 H 0.105 0.895 24 C -0.145 4.145 25 C -0.157 4.157 26 C -0.192 4.192 27 C 0.239 3.761 28 F -0.185 7.185 29 F -0.194 7.194 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.250 0.750 41 H 0.145 0.855 42 H 0.123 0.877 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.121 0.879 46 H 0.093 0.907 47 H 0.133 0.867 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.113 2.188 28.442 31.396 hybrid contribution 0.643 -0.871 -1.259 1.661 sum -12.470 1.317 27.183 29.935 Atomic orbital electron populations 1.21712 0.91902 1.02592 1.03054 1.22265 0.97213 0.98565 0.92778 0.90234 1.22165 0.86093 0.95930 0.97487 1.44876 1.10006 1.78384 1.02392 1.18570 0.86838 1.40151 0.91038 0.92719 1.25680 1.00977 1.01029 0.95703 1.69980 1.35625 1.52839 1.02025 0.85897 0.81096 0.78946 0.76290 1.19459 1.23726 1.18988 1.21581 0.96126 0.98369 0.82863 1.22387 0.96009 0.98954 0.93614 0.87657 1.21174 1.00424 0.92882 0.83539 1.45986 1.69468 1.12957 1.08762 1.20850 0.76254 0.88174 0.84528 1.90687 1.52724 1.16905 1.85148 1.21717 1.05516 0.98583 0.91148 1.22505 1.00872 0.97936 0.92225 0.89468 1.22375 0.93922 1.02352 0.95863 1.22533 1.01901 0.96275 0.94948 1.23392 0.96378 1.02187 0.97282 1.22227 0.82145 0.76003 0.95756 1.92980 1.95844 1.37346 1.92285 1.92994 1.50568 1.85593 1.90207 0.90043 0.92108 0.92181 0.95373 0.94763 0.92853 0.95844 0.94621 0.93173 0.90002 0.74994 0.85468 0.87716 0.90903 0.89844 0.87894 0.90736 0.86708 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.31 71.98 0.67 -2.25 16 2 C -0.09 -2.58 3.09 -9.40 -0.03 -2.61 16 3 H 0.08 2.38 8.05 -2.38 -0.02 2.36 16 4 C 0.11 4.41 4.16 86.85 0.36 4.77 16 5 N -0.63 -29.99 3.21 -691.98 -2.22 -32.21 16 6 C -0.24 -13.86 10.57 84.03 0.89 -12.98 16 7 H 0.05 3.49 8.06 -2.92 -0.02 3.46 16 8 C -0.04 -2.36 5.43 84.86 0.46 -1.90 16 9 N -0.96 -61.41 13.97 21.65 0.30 -61.10 16 10 Si 0.95 46.92 24.27 68.60 1.66 48.59 16 11 H -0.27 -12.46 6.49 99.48 0.65 -11.82 16 12 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 13 H -0.26 -12.40 6.66 99.48 0.66 -11.74 16 14 C 0.14 4.93 6.76 86.73 0.59 5.52 16 15 C -0.09 -2.37 2.42 -9.61 -0.02 -2.39 16 16 H 0.11 2.33 8.04 -2.39 -0.02 2.31 16 17 C 0.14 3.31 5.02 86.38 0.43 3.75 16 18 N -0.72 -14.00 5.47 -463.07 -2.53 -16.54 16 19 C 0.51 10.82 7.61 87.66 0.67 11.49 16 20 O -0.57 -16.17 14.78 -3.01 -0.04 -16.21 16 21 C -0.13 -1.97 4.18 29.85 0.12 -1.84 16 22 C -0.12 -1.89 2.40 -10.07 -0.02 -1.91 16 23 H 0.09 1.81 7.82 -2.39 -0.02 1.79 16 24 C -0.11 -1.42 5.40 31.70 0.17 -1.25 16 25 C -0.12 -1.06 6.91 31.91 0.22 -0.84 16 26 C -0.15 -1.47 6.40 31.67 0.20 -1.26 16 27 C 0.27 4.33 2.53 31.32 0.08 4.41 16 28 F -0.20 -3.54 15.46 44.97 0.70 -2.84 16 29 F -0.21 -4.38 17.04 44.97 0.77 -3.61 16 30 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 31 H 0.06 1.27 8.07 -2.39 -0.02 1.25 16 32 H 0.06 1.27 8.14 -2.38 -0.02 1.26 16 33 H 0.03 1.17 5.42 -2.39 -0.01 1.15 16 34 H 0.03 1.55 6.63 -2.39 -0.02 1.54 16 35 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 36 H 0.02 0.90 7.70 -2.39 -0.02 0.88 16 37 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.40 7.94 -2.39 -0.02 1.38 16 39 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 40 H 0.41 6.28 8.47 -92.71 -0.79 5.49 16 41 H 0.13 1.28 7.97 -2.39 -0.02 1.26 16 42 H 0.10 1.56 7.78 -2.39 -0.02 1.54 16 43 H 0.07 1.25 7.63 -2.39 -0.02 1.23 16 44 H 0.08 0.92 7.77 -2.39 -0.02 0.91 16 45 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.11 0.73 8.12 -2.39 -0.02 0.71 16 48 H 0.10 0.82 8.11 -2.39 -0.02 0.80 16 Total: -1.00 -75.04 377.27 3.48 -71.55 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.06 Total: 11.67 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 4.79 Total: 0.70 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -4.45 Total: -109.85 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.04 Total: -16.21 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 1.46 Total: -6.46 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.66 Total: 48.59 kcal Total: -75.04 3.48 -71.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102281065.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.722 kcal (2) G-P(sol) polarization free energy of solvation -75.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds