Wall clock time and date at job start Tue Mar 31 2020 17:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.88676 * 2 1 4 4 C 1.54911 * 111.00049 * 236.12589 * 2 1 3 5 5 N 1.47428 * 104.83117 * 204.91401 * 4 2 1 6 6 C 1.36936 * 125.65064 * 204.08750 * 5 4 2 7 7 H 1.08000 * 119.99664 * 168.09853 * 6 5 4 8 8 C 1.38814 * 119.99940 * 348.10380 * 6 5 4 9 9 N 1.31611 * 119.99770 * 325.97326 * 8 6 5 10 10 Si 1.86803 * 119.99856 * 145.97398 * 8 6 5 11 11 H 1.48498 * 109.47176 * 59.99787 * 10 8 6 12 12 H 1.48504 * 109.47098 * 299.99679 * 10 8 6 13 13 H 1.48503 * 109.46709 * 179.97438 * 10 8 6 14 14 C 1.47029 * 108.69950 * 24.35676 * 5 4 2 15 15 C 1.54326 * 107.26545 * 358.58471 * 14 5 4 16 16 H 1.08998 * 110.51792 * 96.45441 * 15 14 5 17 17 C 1.53004 * 110.84969 * 219.67235 * 15 14 5 18 18 C 1.52998 * 109.46973 * 288.69629 * 17 15 14 19 19 N 1.46502 * 109.46866 * 179.97438 * 18 17 15 20 20 C 1.34776 * 120.00018 * 179.97438 * 19 18 17 21 21 O 1.21279 * 120.00073 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99942 * 180.02562 * 20 19 18 23 23 H 1.08998 * 110.01692 * 58.60893 * 22 20 19 24 24 C 1.53879 * 110.03109 * 179.97438 * 22 20 19 25 25 C 1.54274 * 106.59594 * 119.28236 * 24 22 20 26 26 C 1.54887 * 104.19216 * 23.61213 * 25 24 22 27 27 F 1.39898 * 110.75609 * 80.37398 * 26 25 24 28 28 F 1.39900 * 110.75577 * 203.74042 * 26 25 24 29 29 C 1.54260 * 110.03294 * 297.16294 * 22 20 19 30 30 H 1.09005 * 109.46919 * 182.42542 * 1 2 3 31 31 H 1.09000 * 109.46841 * 302.42413 * 1 2 3 32 32 H 1.08995 * 109.47319 * 62.42376 * 1 2 3 33 33 H 1.09001 * 110.37176 * 86.07693 * 4 2 1 34 34 H 1.09004 * 110.36966 * 323.75279 * 4 2 1 35 35 H 0.97001 * 120.00692 * 354.24878 * 9 8 6 36 36 H 1.09001 * 109.88100 * 118.13374 * 14 5 4 37 37 H 1.09001 * 109.88095 * 239.29376 * 14 5 4 38 38 H 1.08999 * 109.46578 * 48.69526 * 17 15 14 39 39 H 1.09000 * 109.47220 * 168.69226 * 17 15 14 40 40 H 1.08999 * 109.47385 * 299.99404 * 18 17 15 41 41 H 1.08993 * 109.47304 * 60.00082 * 18 17 15 42 42 H 0.97004 * 120.00259 * 359.97438 * 19 18 17 43 43 H 1.08994 * 110.03931 * 238.56734 * 24 22 20 44 44 H 1.09007 * 110.03377 * 0.02562 * 24 22 20 45 45 H 1.08997 * 110.48318 * 142.28702 * 25 24 22 46 46 H 1.08997 * 110.48826 * 264.80199 * 25 24 22 47 47 H 1.09005 * 110.48784 * 335.78686 * 29 22 20 48 48 H 1.08999 * 110.48682 * 98.42513 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4271 -1.2427 -0.7740 6 6 4.4640 -1.5661 -1.6080 7 1 5.4600 -1.6885 -1.2089 8 6 4.2348 -1.7363 -2.9665 9 7 3.0950 -2.2461 -3.3827 10 14 5.5441 -1.2418 -4.2037 11 1 6.7842 -2.0180 -3.9490 12 1 5.8313 0.2088 -4.0674 13 1 5.0577 -1.5237 -5.5783 14 6 3.4658 -1.2797 0.6953 15 6 2.0862 -0.8085 1.2018 16 1 1.4469 -1.6638 1.4201 17 6 2.2351 0.0865 2.4338 18 6 2.6653 -0.7624 3.6318 19 7 2.8084 0.0946 4.8113 20 6 3.1815 -0.4395 5.9911 21 8 3.3983 -1.6297 6.0765 22 6 3.3281 0.4421 7.2046 23 1 2.3848 0.9456 7.4162 24 6 3.7597 -0.3995 8.4184 25 6 5.1220 0.1586 8.8795 26 6 5.1351 1.6140 8.3499 27 9 4.4023 2.4554 9.1939 28 9 6.4473 2.0768 8.2040 29 6 4.4427 1.4825 6.9703 30 1 -0.3633 -1.0268 0.0435 31 1 -0.3633 0.5510 0.8675 32 1 -0.3634 0.4757 -0.9109 33 1 2.1559 -0.1711 -2.0839 34 1 1.4518 -1.6698 -1.4033 35 1 2.4495 -2.5799 -2.7402 36 1 3.6602 -2.2969 1.0355 37 1 4.2424 -0.6090 1.0627 38 1 2.9889 0.8494 2.2396 39 1 1.2808 0.5659 2.6521 40 1 1.9114 -1.5253 3.8260 41 1 3.6195 -1.2417 3.4135 42 1 2.6346 1.0466 4.7432 43 1 3.0266 -0.3034 9.2191 44 1 3.8636 -1.4455 8.1297 45 1 5.1902 0.1479 9.9673 46 1 5.9379 -0.4163 8.4414 47 1 5.1490 1.1230 6.2218 48 1 4.0151 2.4375 6.6651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103068890.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:40 Heat of formation + Delta-G solvation = -142.086394 kcal Electronic energy + Delta-G solvation = -28530.668052 eV Core-core repulsion = 24255.538516 eV Total energy + Delta-G solvation = -4275.129535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.25214 -47.41886 -40.39700 -38.47570 -37.02374 -35.43513 -33.50951 -31.55568 -30.73956 -29.77013 -28.66338 -26.77034 -25.84167 -24.18170 -22.63125 -21.95863 -21.64495 -20.29340 -19.80594 -19.41400 -18.30826 -17.44245 -17.39270 -17.05078 -16.40869 -15.96161 -15.80757 -15.29584 -14.83083 -14.51262 -14.39969 -14.07415 -13.81067 -13.72904 -13.66608 -13.45456 -13.32764 -13.10436 -12.88109 -12.62390 -12.38890 -12.26595 -11.96589 -11.92210 -11.84822 -11.73589 -11.27472 -11.22825 -11.08994 -11.07166 -10.71792 -10.46369 -10.24631 -10.15837 -10.03716 -9.93916 -9.81641 -9.54175 -9.26899 -8.31532 -6.93523 -6.13690 -3.05870 2.30733 2.85183 3.23732 3.34696 3.51768 3.56083 3.68475 3.73886 3.93698 4.40279 4.48249 4.61260 4.63312 4.74365 4.75928 4.79623 4.88580 4.96281 5.05522 5.10858 5.20274 5.30667 5.36177 5.40498 5.42774 5.54208 5.58162 5.59363 5.72630 5.78306 5.84034 5.95479 6.05263 6.10586 6.16980 6.21309 6.30890 6.39382 6.51703 6.65119 6.86722 7.02128 7.09941 7.22442 7.82194 7.93926 8.50868 9.03399 9.84543 10.41248 11.21070 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.002213 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.618946 B =12646.666842 C =13444.272124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 H 0.072 0.928 4 C 0.151 3.849 5 N -0.604 5.604 6 C -0.343 4.343 7 H 0.066 0.934 8 C -0.023 4.023 9 N -0.908 5.908 10 Si 1.055 2.945 11 H -0.293 1.293 12 H -0.294 1.294 13 H -0.286 1.286 14 C 0.140 3.860 15 C -0.092 4.092 16 H 0.074 0.926 17 C -0.116 4.116 18 C 0.117 3.883 19 N -0.726 5.726 20 C 0.517 3.483 21 O -0.532 6.532 22 C -0.112 4.112 23 H 0.110 0.890 24 C -0.117 4.117 25 C -0.157 4.157 26 C 0.278 3.722 27 F -0.192 7.192 28 F -0.194 7.194 29 C -0.151 4.151 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.023 0.977 35 H 0.268 0.732 36 H 0.020 0.980 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.400 0.600 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.013 9.434 24.251 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 H 0.091 0.909 4 C 0.025 3.975 5 N -0.330 5.330 6 C -0.470 4.470 7 H 0.084 0.916 8 C -0.225 4.225 9 N -0.549 5.549 10 Si 0.885 3.115 11 H -0.220 1.220 12 H -0.222 1.222 13 H -0.211 1.211 14 C 0.014 3.986 15 C -0.112 4.112 16 H 0.093 0.907 17 C -0.154 4.154 18 C -0.006 4.006 19 N -0.377 5.377 20 C 0.302 3.698 21 O -0.409 6.409 22 C -0.134 4.134 23 H 0.128 0.872 24 C -0.155 4.155 25 C -0.195 4.195 26 C 0.241 3.759 27 F -0.173 7.173 28 F -0.175 7.175 29 C -0.190 4.190 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.234 0.766 43 H 0.099 0.901 44 H 0.124 0.876 45 H 0.112 0.888 46 H 0.120 0.880 47 H 0.124 0.876 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.407 8.679 22.619 24.346 hybrid contribution -0.281 0.489 1.665 1.758 sum -2.688 9.167 24.283 26.095 Atomic orbital electron populations 1.21675 0.95314 1.01502 1.00907 1.22421 0.94600 0.99177 0.96249 0.90922 1.21539 0.86548 0.95136 0.94267 1.44585 1.10468 1.78188 0.99786 1.19687 0.87385 1.49177 0.90787 0.91633 1.25634 1.02040 0.98596 0.96213 1.70785 1.11062 1.35244 1.37762 0.83665 0.74945 0.76450 0.76449 1.22034 1.22200 1.21145 1.21377 0.93495 0.97390 0.86291 1.22147 0.98282 0.97558 0.93190 0.90727 1.21773 1.01574 0.98442 0.93611 1.21521 1.02369 0.93305 0.83445 1.46067 1.69756 1.12244 1.09623 1.20307 0.76576 0.88648 0.84236 1.90710 1.49701 1.15860 1.84608 1.21870 1.00613 0.96180 0.94696 0.87199 1.22156 0.95376 1.02203 0.95776 1.23333 1.00725 0.92088 1.03370 1.21964 0.75003 0.88293 0.90600 1.93013 1.77059 1.74014 1.73170 1.93022 1.37602 1.90636 1.96213 1.23295 0.98709 1.01131 0.95822 0.92804 0.93344 0.92740 0.93241 0.95906 0.92119 0.96191 0.95780 0.91101 0.91479 0.91352 0.90869 0.76583 0.90121 0.87580 0.88810 0.88050 0.87640 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.29 37.16 0.35 -1.54 16 2 C -0.10 -1.78 3.09 -88.47 -0.27 -2.05 16 3 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 4 C 0.15 3.46 4.81 -2.53 -0.01 3.45 16 5 N -0.60 -15.39 3.33 -170.06 -0.57 -15.96 16 6 C -0.34 -9.84 9.97 -15.06 -0.15 -9.99 16 7 H 0.07 1.89 8.02 -52.49 -0.42 1.47 16 8 C -0.02 -0.66 4.95 -17.43 -0.09 -0.74 16 9 N -0.91 -27.63 12.87 55.49 0.71 -26.91 16 10 Si 1.06 25.56 30.03 -169.99 -5.10 20.46 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.14 2.88 6.24 -3.06 -0.02 2.86 16 15 C -0.09 -1.45 2.39 -88.78 -0.21 -1.66 16 16 H 0.07 1.17 8.01 -51.93 -0.42 0.75 16 17 C -0.12 -1.34 4.73 -26.73 -0.13 -1.46 16 18 C 0.12 1.34 5.56 -4.04 -0.02 1.32 16 19 N -0.73 -6.53 5.50 -60.30 -0.33 -6.86 16 20 C 0.52 5.23 6.99 -10.98 -0.08 5.15 16 21 O -0.53 -7.60 15.21 5.56 0.08 -7.51 16 22 C -0.11 -0.76 3.30 -90.65 -0.30 -1.06 16 23 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 24 C -0.12 -0.81 6.40 -25.61 -0.16 -0.98 16 25 C -0.16 -1.04 6.43 -25.07 -0.16 -1.20 16 26 C 0.28 2.16 2.51 -24.73 -0.06 2.10 16 27 F -0.19 -1.67 17.21 2.25 0.04 -1.64 16 28 F -0.19 -1.88 17.21 2.25 0.04 -1.84 16 29 C -0.15 -0.97 5.91 -25.06 -0.15 -1.12 16 30 H 0.05 0.76 8.11 -51.93 -0.42 0.33 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 1.26 7.82 -51.93 -0.41 0.85 16 34 H 0.02 0.57 6.92 -51.93 -0.36 0.21 16 35 H 0.27 8.19 6.45 -40.82 -0.26 7.93 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.49 7.69 -51.93 -0.40 0.09 16 38 H 0.07 0.82 7.94 -51.93 -0.41 0.41 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 42 H 0.40 2.45 8.47 -40.82 -0.35 2.11 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.11 0.94 6.39 -51.92 -0.33 0.61 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.11 0.74 7.85 -51.93 -0.41 0.33 16 48 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 386.09 15.07 5.82 5.82 Total: -1.00 -33.95 386.09 -8.80 -42.75 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.02 Total: -1.38 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -1.47 Total: -6.92 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.18 Total: -49.73 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.08 Total: -7.51 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.08 Total: -3.48 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.10 Total: 20.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.95 -8.80 -42.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103068890.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.333 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds