Wall clock time and date at job start Tue Mar 31 2020 17:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.88676 * 2 1 4 4 C 1.54911 * 111.00049 * 236.12589 * 2 1 3 5 5 N 1.47428 * 104.83117 * 204.91401 * 4 2 1 6 6 C 1.36936 * 125.65064 * 204.08750 * 5 4 2 7 7 H 1.08000 * 119.99664 * 168.09853 * 6 5 4 8 8 C 1.38814 * 119.99940 * 348.10380 * 6 5 4 9 9 N 1.31611 * 119.99770 * 325.97326 * 8 6 5 10 10 Si 1.86803 * 119.99856 * 145.97398 * 8 6 5 11 11 H 1.48498 * 109.47176 * 59.99787 * 10 8 6 12 12 H 1.48504 * 109.47098 * 299.99679 * 10 8 6 13 13 H 1.48503 * 109.46709 * 179.97438 * 10 8 6 14 14 C 1.47029 * 108.69950 * 24.35676 * 5 4 2 15 15 C 1.54326 * 107.26545 * 358.58471 * 14 5 4 16 16 H 1.08998 * 110.51792 * 96.45441 * 15 14 5 17 17 C 1.53004 * 110.84969 * 219.67235 * 15 14 5 18 18 C 1.52998 * 109.46973 * 288.69629 * 17 15 14 19 19 N 1.46502 * 109.46866 * 179.97438 * 18 17 15 20 20 C 1.34776 * 120.00018 * 179.97438 * 19 18 17 21 21 O 1.21279 * 120.00073 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99942 * 180.02562 * 20 19 18 23 23 H 1.08998 * 110.01692 * 58.60893 * 22 20 19 24 24 C 1.53879 * 110.03109 * 179.97438 * 22 20 19 25 25 C 1.54274 * 106.59594 * 119.28236 * 24 22 20 26 26 C 1.54887 * 104.19216 * 23.61213 * 25 24 22 27 27 F 1.39898 * 110.75609 * 80.37398 * 26 25 24 28 28 F 1.39900 * 110.75577 * 203.74042 * 26 25 24 29 29 C 1.54260 * 110.03294 * 297.16294 * 22 20 19 30 30 H 1.09005 * 109.46919 * 182.42542 * 1 2 3 31 31 H 1.09000 * 109.46841 * 302.42413 * 1 2 3 32 32 H 1.08995 * 109.47319 * 62.42376 * 1 2 3 33 33 H 1.09001 * 110.37176 * 86.07693 * 4 2 1 34 34 H 1.09004 * 110.36966 * 323.75279 * 4 2 1 35 35 H 0.97001 * 120.00692 * 354.24878 * 9 8 6 36 36 H 1.09001 * 109.88100 * 118.13374 * 14 5 4 37 37 H 1.09001 * 109.88095 * 239.29376 * 14 5 4 38 38 H 1.08999 * 109.46578 * 48.69526 * 17 15 14 39 39 H 1.09000 * 109.47220 * 168.69226 * 17 15 14 40 40 H 1.08999 * 109.47385 * 299.99404 * 18 17 15 41 41 H 1.08993 * 109.47304 * 60.00082 * 18 17 15 42 42 H 0.97004 * 120.00259 * 359.97438 * 19 18 17 43 43 H 1.08994 * 110.03931 * 238.56734 * 24 22 20 44 44 H 1.09007 * 110.03377 * 0.02562 * 24 22 20 45 45 H 1.08997 * 110.48318 * 142.28702 * 25 24 22 46 46 H 1.08997 * 110.48826 * 264.80199 * 25 24 22 47 47 H 1.09005 * 110.48784 * 335.78686 * 29 22 20 48 48 H 1.08999 * 110.48682 * 98.42513 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4271 -1.2427 -0.7740 6 6 4.4640 -1.5661 -1.6080 7 1 5.4600 -1.6885 -1.2089 8 6 4.2348 -1.7363 -2.9665 9 7 3.0950 -2.2461 -3.3827 10 14 5.5441 -1.2418 -4.2037 11 1 6.7842 -2.0180 -3.9490 12 1 5.8313 0.2088 -4.0674 13 1 5.0577 -1.5237 -5.5783 14 6 3.4658 -1.2797 0.6953 15 6 2.0862 -0.8085 1.2018 16 1 1.4469 -1.6638 1.4201 17 6 2.2351 0.0865 2.4338 18 6 2.6653 -0.7624 3.6318 19 7 2.8084 0.0946 4.8113 20 6 3.1815 -0.4395 5.9911 21 8 3.3983 -1.6297 6.0765 22 6 3.3281 0.4421 7.2046 23 1 2.3848 0.9456 7.4162 24 6 3.7597 -0.3995 8.4184 25 6 5.1220 0.1586 8.8795 26 6 5.1351 1.6140 8.3499 27 9 4.4023 2.4554 9.1939 28 9 6.4473 2.0768 8.2040 29 6 4.4427 1.4825 6.9703 30 1 -0.3633 -1.0268 0.0435 31 1 -0.3633 0.5510 0.8675 32 1 -0.3634 0.4757 -0.9109 33 1 2.1559 -0.1711 -2.0839 34 1 1.4518 -1.6698 -1.4033 35 1 2.4495 -2.5799 -2.7402 36 1 3.6602 -2.2969 1.0355 37 1 4.2424 -0.6090 1.0627 38 1 2.9889 0.8494 2.2396 39 1 1.2808 0.5659 2.6521 40 1 1.9114 -1.5253 3.8260 41 1 3.6195 -1.2417 3.4135 42 1 2.6346 1.0466 4.7432 43 1 3.0266 -0.3034 9.2191 44 1 3.8636 -1.4455 8.1297 45 1 5.1902 0.1479 9.9673 46 1 5.9379 -0.4163 8.4414 47 1 5.1490 1.1230 6.2218 48 1 4.0151 2.4375 6.6651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103068890.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:39 Heat of formation + Delta-G solvation = -163.245121 kcal Electronic energy + Delta-G solvation = -28531.585563 eV Core-core repulsion = 24255.538516 eV Total energy + Delta-G solvation = -4276.047046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.89056 -48.07079 -41.18950 -39.97530 -37.70134 -36.54228 -35.22318 -32.68256 -32.56331 -30.48080 -29.27213 -28.17669 -27.54388 -25.61001 -23.81539 -22.96315 -22.24425 -21.57480 -21.09316 -20.55535 -19.51433 -18.98104 -18.01786 -17.75678 -17.14482 -16.93331 -16.69818 -16.35114 -16.07737 -15.71758 -15.60075 -15.19824 -15.13250 -15.05037 -14.72564 -14.42891 -14.38549 -14.07301 -13.96052 -13.64938 -13.45820 -13.31396 -13.20548 -12.93010 -12.67077 -12.52419 -12.47884 -12.44519 -12.36148 -12.27386 -11.92356 -11.75237 -11.74383 -11.67483 -11.55494 -11.46384 -11.26596 -10.87479 -10.47019 -10.13213 -9.04826 -8.42323 -5.30062 1.53851 1.54728 1.62207 1.82217 2.09858 2.62127 2.66382 2.80080 3.09938 3.12162 3.37752 3.53819 3.58999 3.79811 3.83219 3.90558 3.94476 4.10676 4.17010 4.23028 4.27955 4.29153 4.35135 4.38128 4.51990 4.60087 4.61348 4.67610 4.73911 4.84365 4.85219 4.89694 4.91190 5.00408 5.06665 5.09637 5.14584 5.16484 5.18609 5.32371 5.38735 5.43771 5.55691 5.65167 6.27358 6.52500 6.87469 7.21437 7.69865 8.29050 8.91997 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.017063 B = 0.002213 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.618946 B =12646.666842 C =13444.272124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 H 0.083 0.917 4 C 0.151 3.849 5 N -0.628 5.628 6 C -0.357 4.357 7 H 0.056 0.944 8 C -0.076 4.076 9 N -0.934 5.934 10 Si 1.110 2.890 11 H -0.276 1.276 12 H -0.280 1.280 13 H -0.290 1.290 14 C 0.134 3.866 15 C -0.078 4.078 16 H 0.076 0.924 17 C -0.100 4.100 18 C 0.123 3.877 19 N -0.712 5.712 20 C 0.515 3.485 21 O -0.580 6.580 22 C -0.102 4.102 23 H 0.140 0.860 24 C -0.117 4.117 25 C -0.156 4.156 26 C 0.272 3.728 27 F -0.196 7.196 28 F -0.207 7.207 29 C -0.146 4.146 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.014 0.986 34 H -0.002 1.002 35 H 0.253 0.747 36 H 0.002 0.998 37 H 0.029 0.971 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.418 0.582 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.912 11.937 26.006 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 H 0.101 0.899 4 C 0.026 3.974 5 N -0.355 5.355 6 C -0.485 4.485 7 H 0.074 0.926 8 C -0.272 4.272 9 N -0.576 5.576 10 Si 0.934 3.066 11 H -0.201 1.201 12 H -0.206 1.206 13 H -0.215 1.215 14 C 0.009 3.991 15 C -0.097 4.097 16 H 0.095 0.905 17 C -0.137 4.137 18 C -0.001 4.001 19 N -0.364 5.364 20 C 0.302 3.698 21 O -0.460 6.460 22 C -0.123 4.123 23 H 0.158 0.842 24 C -0.155 4.155 25 C -0.194 4.194 26 C 0.236 3.764 27 F -0.177 7.177 28 F -0.188 7.188 29 C -0.185 4.185 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.016 0.984 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.256 0.744 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.123 0.877 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.314 11.226 24.411 27.072 hybrid contribution 0.037 -0.351 1.165 1.217 sum -3.277 10.875 25.575 27.984 Atomic orbital electron populations 1.21652 0.92387 1.01953 1.02778 1.22335 0.96820 0.98476 0.93206 0.89889 1.21527 0.85565 0.94442 0.95906 1.44928 1.10734 1.78104 1.01751 1.19947 0.88109 1.48641 0.91810 0.92562 1.27074 1.03445 0.98291 0.98399 1.70908 1.11941 1.37529 1.37251 0.82939 0.73000 0.76907 0.73758 1.20148 1.20629 1.21542 1.21580 0.96997 0.96676 0.83816 1.22062 0.94800 0.98298 0.94564 0.90515 1.21632 1.03734 0.97357 0.91019 1.21260 1.00712 0.93605 0.84548 1.45889 1.69072 1.12926 1.08540 1.20888 0.75398 0.88371 0.85126 1.90702 1.51725 1.18160 1.85383 1.21884 1.02166 0.95584 0.92699 0.84210 1.22144 0.95982 1.00945 0.96443 1.23335 1.00508 0.91397 1.04118 1.22165 0.74465 0.88414 0.91358 1.93004 1.77039 1.74207 1.73413 1.92995 1.38709 1.90821 1.96315 1.23297 0.98311 1.02071 0.94788 0.93320 0.89344 0.92788 0.96727 0.98388 0.93743 0.98040 0.95293 0.90474 0.87843 0.91986 0.93710 0.74419 0.88378 0.89762 0.87673 0.88546 0.88391 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.29 71.98 0.67 -2.57 16 2 C -0.09 -2.87 3.09 -9.40 -0.03 -2.90 16 3 H 0.08 2.54 8.05 -2.39 -0.02 2.52 16 4 C 0.15 7.16 4.81 86.86 0.42 7.57 16 5 N -0.63 -33.07 3.33 -691.94 -2.30 -35.37 16 6 C -0.36 -21.11 9.97 84.03 0.84 -20.28 16 7 H 0.06 3.34 8.02 -2.91 -0.02 3.32 16 8 C -0.08 -4.48 4.95 84.86 0.42 -4.06 16 9 N -0.93 -58.95 12.87 21.65 0.28 -58.67 16 10 Si 1.11 52.40 30.03 68.60 2.06 54.46 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 14 C 0.13 5.60 6.24 86.73 0.54 6.14 16 15 C -0.08 -2.33 2.39 -9.60 -0.02 -2.35 16 16 H 0.08 2.29 8.01 -2.39 -0.02 2.27 16 17 C -0.10 -1.95 4.73 30.60 0.14 -1.81 16 18 C 0.12 2.61 5.56 86.38 0.48 3.09 16 19 N -0.71 -10.86 5.50 -463.07 -2.55 -13.41 16 20 C 0.52 9.53 6.99 87.66 0.61 10.14 16 21 O -0.58 -16.48 15.21 -3.03 -0.05 -16.53 16 22 C -0.10 -1.11 3.30 -10.82 -0.04 -1.15 16 23 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 24 C -0.12 -1.43 6.40 31.32 0.20 -1.23 16 25 C -0.16 -1.85 6.43 31.67 0.20 -1.65 16 26 C 0.27 3.71 2.51 31.89 0.08 3.79 16 27 F -0.20 -2.94 17.21 44.97 0.77 -2.17 16 28 F -0.21 -3.78 17.21 44.97 0.77 -3.01 16 29 C -0.15 -1.49 5.91 31.68 0.19 -1.30 16 30 H 0.05 1.27 8.11 -2.38 -0.02 1.25 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.01 0.77 7.82 -2.39 -0.02 0.75 16 34 H 0.00 -0.08 6.92 -2.39 -0.02 -0.10 16 35 H 0.25 16.28 6.45 -92.71 -0.60 15.68 16 36 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.03 1.18 7.69 -2.39 -0.02 1.16 16 38 H 0.08 1.49 7.94 -2.39 -0.02 1.48 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 41 H 0.04 1.22 7.68 -2.39 -0.02 1.20 16 42 H 0.42 3.36 8.47 -92.71 -0.79 2.57 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 1.47 6.39 -2.38 -0.02 1.45 16 45 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 47 H 0.10 1.19 7.85 -2.38 -0.02 1.17 16 48 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -78.66 386.09 4.04 -74.63 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.34 Total: 8.62 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 4.71 Total: -8.56 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -4.57 Total: -107.45 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.05 Total: -16.53 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 1.55 Total: -5.17 kcal Atomic # 14 Polarization: 52.40 SS G_CDS: 2.06 Total: 54.46 kcal Total: -78.66 4.04 -74.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103068890.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.618 kcal (2) G-P(sol) polarization free energy of solvation -78.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds