Wall clock time and date at job start Tue Mar 31 2020 17:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.92120 * 2 1 4 4 C 1.54913 * 111.00252 * 236.09888 * 2 1 3 5 5 N 1.47420 * 104.83259 * 204.91614 * 4 2 1 6 6 C 1.36937 * 125.64793 * 204.09478 * 5 4 2 7 7 H 1.08001 * 120.00419 * 180.02562 * 6 5 4 8 8 C 1.38811 * 120.00235 * 0.03911 * 6 5 4 9 9 N 1.31626 * 119.99794 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00448 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47099 * 89.99880 * 10 8 6 12 12 H 1.48494 * 109.47109 * 210.00368 * 10 8 6 13 13 H 1.48500 * 109.46851 * 330.00169 * 10 8 6 14 14 C 1.47020 * 108.70258 * 24.12758 * 5 4 2 15 15 C 1.54317 * 107.27352 * 358.94192 * 14 5 4 16 16 H 1.09008 * 110.72489 * 96.34084 * 15 14 5 17 17 C 1.52995 * 110.72394 * 219.44432 * 15 14 5 18 18 C 1.53010 * 109.46760 * 293.54485 * 17 15 14 19 19 N 1.46501 * 109.46682 * 179.97438 * 18 17 15 20 20 C 1.34777 * 119.99373 * 180.02562 * 19 18 17 21 21 O 1.21275 * 120.00396 * 359.97438 * 20 19 18 22 22 C 1.50704 * 119.99776 * 180.02562 * 20 19 18 23 23 H 1.09002 * 110.01694 * 59.29570 * 22 20 19 24 24 C 1.54263 * 110.03078 * 297.90209 * 22 20 19 25 25 C 1.55013 * 104.14119 * 217.06572 * 24 22 20 26 26 C 1.54894 * 102.75068 * 37.95307 * 25 24 22 27 27 F 1.39893 * 110.48896 * 203.36631 * 26 25 24 28 28 F 1.39907 * 110.48366 * 80.72550 * 26 25 24 29 29 C 1.53876 * 110.03281 * 180.68974 * 22 20 19 30 30 H 1.09002 * 109.46981 * 296.09892 * 1 2 3 31 31 H 1.08997 * 109.47119 * 56.09249 * 1 2 3 32 32 H 1.08997 * 109.47775 * 176.09634 * 1 2 3 33 33 H 1.09007 * 110.36529 * 86.07853 * 4 2 1 34 34 H 1.09005 * 110.36473 * 323.75998 * 4 2 1 35 35 H 0.97001 * 120.00032 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.88371 * 239.51569 * 14 5 4 37 37 H 1.09003 * 109.87926 * 118.35522 * 14 5 4 38 38 H 1.08991 * 109.47742 * 173.54504 * 17 15 14 39 39 H 1.09000 * 109.47308 * 53.53645 * 17 15 14 40 40 H 1.09001 * 109.46974 * 59.99538 * 18 17 15 41 41 H 1.08995 * 109.46878 * 299.99329 * 18 17 15 42 42 H 0.96990 * 120.00361 * 359.97438 * 19 18 17 43 43 H 1.08996 * 110.48639 * 335.74137 * 24 22 20 44 44 H 1.09002 * 110.48477 * 98.37959 * 24 22 20 45 45 H 1.08997 * 110.76517 * 279.63453 * 25 24 22 46 46 H 1.08997 * 110.90480 * 156.33575 * 25 24 22 47 47 H 1.09002 * 110.03233 * 238.62121 * 29 22 20 48 48 H 1.09003 * 110.02920 * 0.04654 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4270 -1.2431 -0.7734 6 6 4.4639 -1.5667 -1.6073 7 1 5.4124 -1.8769 -1.1944 8 6 4.2960 -1.4957 -2.9834 9 7 3.1403 -1.1168 -3.4867 10 14 5.7102 -1.9378 -4.1210 11 1 5.6552 -3.3874 -4.4388 12 1 5.6004 -1.1514 -5.3759 13 1 6.9991 -1.6260 -3.4526 14 6 3.4674 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4477 -1.6633 1.4238 17 6 2.2350 0.0875 2.4337 18 6 2.7849 -0.7364 3.5999 19 7 2.9280 0.1213 4.7789 20 6 3.3989 -0.3924 5.9326 21 8 3.7038 -1.5646 5.9947 22 6 3.5456 0.4896 7.1457 23 1 2.5789 0.9135 7.4179 24 6 4.5560 1.6193 6.8586 25 6 5.3154 1.7977 8.1981 26 6 5.4521 0.3422 8.7100 27 9 5.6226 0.3254 10.0985 28 9 6.5208 -0.3012 8.0765 29 6 4.1152 -0.3224 8.3221 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8529 32 1 -0.3634 -1.0252 -0.0700 33 1 2.1559 -0.1719 -2.0838 34 1 1.4517 -1.6704 -1.4025 35 1 3.0230 -1.0668 -4.4483 36 1 4.2426 -0.5999 1.0598 37 1 3.6649 -2.2895 1.0399 38 1 1.2620 0.4968 2.7051 39 1 2.9224 0.9030 2.2091 40 1 3.7580 -1.1457 3.3284 41 1 2.0975 -1.5518 3.8246 42 1 2.6845 1.0588 4.7292 43 1 5.2436 1.3238 6.0662 44 1 4.0348 2.5381 6.5896 45 1 4.7326 2.3993 8.8956 46 1 6.2966 2.2427 8.0327 47 1 3.4249 -0.2928 9.1652 48 1 4.2863 -1.3543 8.0153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103068891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:43 Heat of formation + Delta-G solvation = -137.357056 kcal Electronic energy + Delta-G solvation = -28578.448198 eV Core-core repulsion = 24303.523743 eV Total energy + Delta-G solvation = -4274.924456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.14819 -47.28023 -40.31452 -38.26113 -36.99362 -35.32404 -33.27953 -31.32673 -30.68543 -29.78657 -28.66463 -26.70480 -25.62760 -24.22639 -22.63392 -21.95884 -21.58585 -20.23845 -19.63070 -19.21588 -18.15862 -17.55580 -16.92646 -16.85550 -16.22989 -15.97188 -15.69629 -15.07707 -14.62519 -14.47606 -14.37266 -14.24732 -13.75262 -13.68168 -13.58206 -13.46072 -12.99345 -12.84115 -12.63752 -12.36014 -12.17147 -12.10215 -12.01960 -11.90131 -11.66974 -11.50862 -11.38370 -11.13959 -11.02673 -10.99141 -10.83878 -10.74765 -10.15343 -10.03995 -9.88566 -9.80691 -9.71302 -9.31899 -9.18008 -8.63032 -6.80088 -5.63107 -3.04520 2.40652 2.90564 3.36023 3.41312 3.46358 3.48110 3.52391 3.64804 4.02610 4.43609 4.50739 4.52657 4.65305 4.70435 4.79025 4.88468 4.96912 5.08205 5.20117 5.23783 5.27879 5.45921 5.46482 5.52811 5.55474 5.55911 5.64889 5.66188 5.76438 5.92132 5.95979 6.13076 6.22732 6.25016 6.30916 6.34710 6.55249 6.61927 6.69832 6.83343 7.02327 7.30564 7.56509 7.66130 7.88598 8.02263 8.38962 9.24969 9.85911 10.51213 11.40566 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.002242 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.766531 B =12486.477438 C =13559.276582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.220 4.220 7 H 0.077 0.923 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.139 3.861 15 C -0.093 4.093 16 H 0.072 0.928 17 C -0.115 4.115 18 C 0.116 3.884 19 N -0.725 5.725 20 C 0.515 3.485 21 O -0.533 6.533 22 C -0.111 4.111 23 H 0.112 0.888 24 C -0.116 4.116 25 C -0.157 4.157 26 C 0.278 3.722 27 F -0.198 7.198 28 F -0.190 7.190 29 C -0.158 4.158 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.105 0.895 34 H 0.011 0.989 35 H 0.251 0.749 36 H 0.022 0.978 37 H 0.019 0.981 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.400 0.600 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 9.626 23.708 25.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.086 0.914 4 C 0.033 3.967 5 N -0.331 5.331 6 C -0.349 4.349 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.154 4.154 18 C -0.007 4.007 19 N -0.376 5.376 20 C 0.300 3.700 21 O -0.410 6.410 22 C -0.133 4.133 23 H 0.130 0.870 24 C -0.154 4.154 25 C -0.195 4.195 26 C 0.242 3.758 27 F -0.179 7.179 28 F -0.171 7.171 29 C -0.196 4.196 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.029 0.971 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.234 0.766 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.121 0.879 46 H 0.114 0.886 47 H 0.119 0.881 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.203 8.717 23.521 25.288 hybrid contribution 0.709 0.031 -0.519 0.879 sum -2.494 8.748 23.002 24.735 Atomic orbital electron populations 1.21633 0.95777 1.01342 1.00333 1.22632 0.94355 0.99319 0.97108 0.91396 1.21979 0.84101 0.95841 0.94744 1.44507 1.10528 1.78940 0.99172 1.19091 0.91083 1.37457 0.87245 0.90563 1.24783 0.97296 1.02111 0.96613 1.69806 1.22438 1.53998 1.10962 0.86080 0.81267 0.77854 0.80373 1.21653 1.21680 1.20708 1.21366 0.93695 0.97217 0.86373 1.22143 0.98147 0.97624 0.93306 0.90923 1.21778 1.00911 0.98672 0.93992 1.21546 1.02166 0.93356 0.83640 1.46024 1.66319 1.13942 1.11294 1.20341 0.76948 0.88391 0.84343 1.90716 1.49179 1.17086 1.83969 1.21851 1.01765 0.96073 0.93583 0.87025 1.22391 0.97521 0.98124 0.97354 1.23478 1.03731 0.93759 0.98524 1.21892 0.85822 0.94282 0.73853 1.93001 1.96304 1.97353 1.31268 1.93050 1.58968 1.83505 1.81584 1.23134 0.94261 1.03276 0.98921 0.93870 0.92894 0.93015 0.87765 0.97074 0.93805 0.96007 0.96292 0.91640 0.91220 0.90839 0.91440 0.76624 0.89717 0.88935 0.87915 0.88596 0.88067 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.31 37.16 0.35 -1.63 16 2 C -0.11 -2.05 3.09 -88.47 -0.27 -2.32 16 3 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 4 C 0.16 3.80 5.36 -2.53 -0.01 3.78 16 5 N -0.61 -15.62 3.39 -170.08 -0.58 -16.20 16 6 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 7 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 9 N -0.92 -27.02 10.09 55.49 0.56 -26.46 16 10 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.14 2.89 5.99 -3.07 -0.02 2.87 16 15 C -0.09 -1.51 2.45 -88.79 -0.22 -1.73 16 16 H 0.07 1.18 8.04 -51.92 -0.42 0.76 16 17 C -0.12 -1.39 4.72 -26.73 -0.13 -1.52 16 18 C 0.12 1.40 5.52 -4.04 -0.02 1.38 16 19 N -0.72 -6.81 5.49 -60.29 -0.33 -7.14 16 20 C 0.51 5.54 7.00 -10.98 -0.08 5.46 16 21 O -0.53 -8.21 15.21 5.56 0.08 -8.12 16 22 C -0.11 -0.76 3.29 -90.65 -0.30 -1.06 16 23 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 24 C -0.12 -0.63 6.30 -25.01 -0.16 -0.79 16 25 C -0.16 -0.89 6.49 -24.67 -0.16 -1.05 16 26 C 0.28 2.47 2.49 -25.07 -0.06 2.41 16 27 F -0.20 -1.95 17.16 2.25 0.04 -1.92 16 28 F -0.19 -2.28 17.17 2.25 0.04 -2.24 16 29 C -0.16 -1.29 6.01 -25.61 -0.15 -1.45 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.10 2.83 5.87 -51.93 -0.30 2.53 16 34 H 0.01 0.29 7.98 -51.93 -0.41 -0.12 16 35 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.02 0.45 7.76 -51.93 -0.40 0.05 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 40 H 0.07 1.06 7.49 -51.93 -0.39 0.67 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.40 2.49 8.46 -40.82 -0.35 2.15 16 43 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 44 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.62 8.11 -51.93 -0.42 0.20 16 48 H 0.12 1.29 6.37 -51.93 -0.33 0.96 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -33.72 384.69 -8.94 -42.66 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -8.04 Total: -1.18 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.48 Total: -2.47 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.35 Total: -49.80 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.08 Total: -8.12 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.08 Total: -4.16 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.72 -8.94 -42.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103068891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.697 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds