Wall clock time and date at job start Tue Mar 31 2020 17:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.88674 * 2 1 4 4 C 1.54908 * 111.00222 * 236.12262 * 2 1 3 5 5 N 1.47426 * 104.83480 * 204.87534 * 4 2 1 6 6 C 1.36935 * 125.65095 * 204.08509 * 5 4 2 7 7 H 1.08001 * 119.99955 * 11.50619 * 6 5 4 8 8 C 1.38811 * 119.99853 * 191.49692 * 6 5 4 9 9 N 1.31621 * 120.00295 * 206.17070 * 8 6 5 10 10 Si 1.86803 * 119.99841 * 26.17539 * 8 6 5 11 11 H 1.48497 * 109.47088 * 275.72957 * 10 8 6 12 12 H 1.48499 * 109.47011 * 35.73234 * 10 8 6 13 13 H 1.48502 * 109.46918 * 155.73052 * 10 8 6 14 14 C 1.47022 * 108.69923 * 24.35526 * 5 4 2 15 15 C 1.54340 * 107.26661 * 358.58709 * 14 5 4 16 16 H 1.08995 * 110.67079 * 96.52100 * 15 14 5 17 17 C 1.53003 * 110.84892 * 219.67266 * 15 14 5 18 18 C 1.52998 * 109.47361 * 288.69215 * 17 15 14 19 19 N 1.46498 * 109.47274 * 179.97438 * 18 17 15 20 20 C 1.34773 * 120.00059 * 179.97438 * 19 18 17 21 21 O 1.21287 * 120.00160 * 0.02562 * 20 19 18 22 22 C 1.50703 * 120.00089 * 179.97438 * 20 19 18 23 23 C 1.53002 * 109.47031 * 180.02562 * 22 20 19 24 24 C 1.53778 * 113.61446 * 274.13910 * 23 22 20 25 25 C 1.53961 * 87.01681 * 220.05010 * 24 23 22 26 26 F 1.39895 * 113.53531 * 270.80597 * 25 24 23 27 27 F 1.39905 * 113.73903 * 139.94494 * 25 24 23 28 28 C 1.53777 * 87.11163 * 25.36390 * 25 24 23 29 29 H 1.08991 * 109.46861 * 182.42661 * 1 2 3 30 30 H 1.09000 * 109.46110 * 302.42702 * 1 2 3 31 31 H 1.09000 * 109.47063 * 62.42276 * 1 2 3 32 32 H 1.09006 * 110.37290 * 86.03669 * 4 2 1 33 33 H 1.09004 * 110.36903 * 323.71634 * 4 2 1 34 34 H 0.96991 * 120.00246 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.88281 * 118.12776 * 14 5 4 36 36 H 1.08999 * 109.88588 * 239.29734 * 14 5 4 37 37 H 1.09008 * 109.46756 * 48.69158 * 17 15 14 38 38 H 1.08996 * 109.46968 * 168.68933 * 17 15 14 39 39 H 1.09005 * 109.46659 * 300.00288 * 18 17 15 40 40 H 1.09005 * 109.47110 * 59.99851 * 18 17 15 41 41 H 0.97000 * 119.99890 * 0.02562 * 19 18 17 42 42 H 1.08995 * 109.47156 * 300.00426 * 22 20 19 43 43 H 1.09005 * 109.47053 * 60.00244 * 22 20 19 44 44 H 1.08994 * 112.84907 * 45.33255 * 23 22 20 45 45 H 1.08997 * 113.61363 * 334.56478 * 24 23 22 46 46 H 1.08992 * 113.61739 * 105.47180 * 24 23 22 47 47 H 1.09003 * 113.61228 * 220.08973 * 28 25 24 48 48 H 1.09000 * 113.61443 * 89.18669 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2007 5 7 3.4275 -1.2419 -0.7743 6 6 4.4642 -1.5650 -1.6087 7 1 4.4008 -1.3365 -2.6623 8 6 5.5967 -2.1861 -1.1001 9 7 6.7545 -2.0455 -1.7102 10 14 5.4774 -3.2217 0.4500 11 1 5.5796 -2.3420 1.6420 12 1 4.1745 -3.9338 0.4705 13 1 6.5835 -4.2124 0.4697 14 6 3.4667 -1.2785 0.6949 15 6 2.0870 -0.8078 1.2018 16 1 1.4465 -1.6616 1.4226 17 6 2.2359 0.0876 2.4335 18 6 2.6670 -0.7606 3.6317 19 7 2.8101 0.0968 4.8108 20 6 3.1839 -0.4367 5.9907 21 8 3.4022 -1.6267 6.0761 22 6 3.3317 0.4454 7.2036 23 6 3.7626 -0.4029 8.4017 24 6 2.5872 -1.0510 9.1522 25 6 3.3394 -0.7179 10.4536 26 9 4.2187 -1.7255 10.8642 27 9 2.5082 -0.2687 11.4854 28 6 4.0242 0.4180 9.6755 29 1 -0.3633 -1.0267 0.0435 30 1 -0.3632 0.5511 0.8675 31 1 -0.3633 0.4758 -0.9109 32 1 2.1553 -0.1713 -2.0840 33 1 1.4522 -1.6702 -1.4027 34 1 7.5457 -2.4798 -1.3550 35 1 3.6617 -2.2955 1.0354 36 1 4.2431 -0.6072 1.0619 37 1 2.9894 0.8509 2.2388 38 1 1.2815 0.5665 2.6520 39 1 1.9135 -1.5240 3.8262 40 1 3.6214 -1.2396 3.4131 41 1 2.6351 1.0484 4.7426 42 1 4.0858 1.2078 7.0086 43 1 2.3777 0.9254 7.4221 44 1 4.5641 -1.1008 8.1598 45 1 1.6471 -0.5108 9.0409 46 1 2.4868 -2.1202 8.9664 47 1 5.0821 0.5330 9.9113 48 1 3.4775 1.3605 9.7074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103159273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:37 Heat of formation + Delta-G solvation = -103.232935 kcal Electronic energy + Delta-G solvation = -28324.369284 eV Core-core repulsion = 24050.924561 eV Total energy + Delta-G solvation = -4273.444723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.13282 -47.47131 -40.15806 -38.68183 -38.04131 -35.32743 -33.35620 -31.88718 -31.01108 -30.35040 -27.25756 -26.68766 -26.13472 -24.44671 -23.33301 -21.99028 -20.86601 -20.32984 -20.09763 -19.59312 -17.81123 -17.31634 -16.98251 -16.93602 -16.59454 -15.99063 -15.97268 -15.51858 -15.00130 -14.64325 -14.35339 -14.25821 -13.82092 -13.78196 -13.63011 -13.56385 -13.26986 -13.15563 -12.99061 -12.80483 -12.60849 -12.23408 -11.97935 -11.76460 -11.70495 -11.58690 -11.44986 -11.32929 -11.26944 -10.95609 -10.82451 -10.80869 -10.44248 -10.25551 -10.13717 -9.88303 -9.78405 -9.22720 -9.15063 -8.62277 -7.08350 -5.92931 -3.16988 2.48334 2.95363 3.10875 3.38567 3.40604 3.52358 3.54160 3.86588 3.91739 3.97100 4.52347 4.57790 4.71392 4.75050 4.90170 4.91990 4.94703 4.95793 5.00738 5.08656 5.11355 5.24512 5.27704 5.35536 5.37815 5.40200 5.46477 5.51803 5.73825 5.80265 5.83553 5.84814 5.93342 6.04746 6.10487 6.13056 6.22237 6.33201 6.39200 6.49463 6.63956 6.80380 6.84788 7.33332 7.69681 8.07360 8.31936 8.85412 9.72271 10.20090 11.23101 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.002389 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.628132 B =11718.932316 C =13020.736361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.078 0.922 4 C 0.139 3.861 5 N -0.611 5.611 6 C -0.242 4.242 7 H 0.094 0.906 8 C 0.019 3.981 9 N -0.906 5.906 10 Si 0.884 3.116 11 H -0.286 1.286 12 H -0.281 1.281 13 H -0.304 1.304 14 C 0.122 3.878 15 C -0.093 4.093 16 H 0.076 0.924 17 C -0.116 4.116 18 C 0.114 3.886 19 N -0.729 5.729 20 C 0.508 3.492 21 O -0.536 6.536 22 C -0.129 4.129 23 C -0.089 4.089 24 C -0.158 4.158 25 C 0.252 3.748 26 F -0.179 7.179 27 F -0.193 7.193 28 C -0.162 4.162 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.026 0.974 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.400 0.600 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.253 10.164 21.338 26.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.338 5.338 6 C -0.369 4.369 7 H 0.112 0.888 8 C -0.179 4.179 9 N -0.550 5.550 10 Si 0.716 3.284 11 H -0.214 1.214 12 H -0.208 1.208 13 H -0.233 1.233 14 C -0.003 4.003 15 C -0.113 4.113 16 H 0.095 0.905 17 C -0.154 4.154 18 C -0.010 4.010 19 N -0.381 5.381 20 C 0.294 3.706 21 O -0.413 6.413 22 C -0.169 4.169 23 C -0.107 4.107 24 C -0.196 4.196 25 C 0.215 3.785 26 F -0.160 7.160 27 F -0.174 7.174 28 C -0.200 4.200 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.234 0.766 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.133 0.867 45 H 0.128 0.872 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.831 9.204 21.340 26.078 hybrid contribution 0.025 -0.415 1.008 1.090 sum -11.806 8.789 22.348 26.759 Atomic orbital electron populations 1.21689 0.95090 1.01599 1.01114 1.22368 0.94628 0.99383 0.95637 0.90367 1.21640 0.86541 0.95479 0.95022 1.44812 1.09312 1.79364 1.00274 1.18659 0.92161 1.33816 0.92256 0.88805 1.24797 0.94930 1.00525 0.97628 1.69896 0.98159 1.44613 1.42302 0.87015 0.75848 0.81465 0.84080 1.21351 1.20832 1.23272 1.21745 0.94459 0.98151 0.85938 1.22168 0.97926 0.97719 0.93465 0.90518 1.21772 1.01688 0.98459 0.93530 1.21508 1.02405 0.93372 0.83671 1.46062 1.70213 1.12145 1.09692 1.20595 0.76702 0.88975 0.84367 1.90743 1.49399 1.16080 1.85037 1.21612 1.04102 0.98598 0.92583 1.22164 0.99043 0.97477 0.92061 1.24198 0.99352 1.04998 0.91069 1.22148 0.85452 0.87633 0.83244 1.93028 1.69303 1.61826 1.91844 1.93007 1.72266 1.89046 1.63104 1.24187 1.03473 0.97998 0.94326 0.92738 0.93090 0.92693 0.93401 0.95846 0.92783 0.95652 0.94199 0.90853 0.91283 0.91420 0.90983 0.76641 0.87963 0.88370 0.86699 0.87183 0.88392 0.88583 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.30 37.16 0.35 -1.22 16 2 C -0.10 -1.49 3.09 -88.47 -0.27 -1.77 16 3 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 4 C 0.14 2.67 6.70 -2.53 -0.02 2.66 16 5 N -0.61 -14.84 3.28 -170.06 -0.56 -15.40 16 6 C -0.24 -6.95 10.57 -15.06 -0.16 -7.11 16 7 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 8 C 0.02 0.58 5.43 -17.43 -0.09 0.48 16 9 N -0.91 -28.34 13.97 55.49 0.78 -27.56 16 10 Si 0.88 23.49 24.29 -169.99 -4.13 19.36 16 11 H -0.29 -7.36 6.72 56.52 0.38 -6.98 16 12 H -0.28 -7.41 6.74 56.52 0.38 -7.03 16 13 H -0.30 -8.21 7.11 56.52 0.40 -7.80 16 14 C 0.12 2.63 3.94 -3.06 -0.01 2.62 16 15 C -0.09 -1.45 2.39 -88.78 -0.21 -1.67 16 16 H 0.08 1.16 8.01 -51.93 -0.42 0.75 16 17 C -0.12 -1.39 4.73 -26.73 -0.13 -1.51 16 18 C 0.11 1.47 5.56 -4.04 -0.02 1.45 16 19 N -0.73 -7.21 5.56 -60.29 -0.33 -7.54 16 20 C 0.51 5.54 7.83 -10.99 -0.09 5.45 16 21 O -0.54 -8.38 15.79 5.55 0.09 -8.30 16 22 C -0.13 -0.80 5.52 -27.88 -0.15 -0.96 16 23 C -0.09 -0.66 3.09 -89.81 -0.28 -0.93 16 24 C -0.16 -1.21 7.44 -25.83 -0.19 -1.40 16 25 C 0.25 2.12 3.28 -25.83 -0.08 2.04 16 26 F -0.18 -1.92 17.38 2.25 0.04 -1.88 16 27 F -0.19 -1.85 17.42 2.25 0.04 -1.81 16 28 C -0.16 -0.94 7.43 -25.92 -0.19 -1.13 16 29 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.02 0.45 8.04 -51.93 -0.42 0.03 16 34 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 35 H 0.03 0.62 3.73 -51.93 -0.19 0.42 16 36 H 0.04 0.91 7.38 -51.93 -0.38 0.52 16 37 H 0.07 0.89 7.94 -51.92 -0.41 0.48 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.18 7.68 -51.93 -0.40 0.78 16 41 H 0.40 2.57 8.47 -40.82 -0.35 2.22 16 42 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.37 7.88 -51.93 -0.41 -0.04 16 44 H 0.11 1.10 7.73 -51.93 -0.40 0.70 16 45 H 0.11 0.64 7.92 -51.93 -0.41 0.23 16 46 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.11 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 385.09 15.07 5.80 5.80 Total: -1.00 -35.39 385.09 -7.87 -43.25 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -8.03 Total: -2.93 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.56 Total: -3.00 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.12 Total: -50.50 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.08 Total: -3.69 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -4.13 Total: 19.36 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.39 -7.87 -43.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103159273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.978 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds