Wall clock time and date at job start Tue Mar 31 2020 17:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.88674 * 2 1 4 4 C 1.54908 * 111.00222 * 236.12262 * 2 1 3 5 5 N 1.47426 * 104.83480 * 204.87534 * 4 2 1 6 6 C 1.36935 * 125.65095 * 204.08509 * 5 4 2 7 7 H 1.08001 * 119.99955 * 11.50619 * 6 5 4 8 8 C 1.38811 * 119.99853 * 191.49692 * 6 5 4 9 9 N 1.31621 * 120.00295 * 206.17070 * 8 6 5 10 10 Si 1.86803 * 119.99841 * 26.17539 * 8 6 5 11 11 H 1.48497 * 109.47088 * 275.72957 * 10 8 6 12 12 H 1.48499 * 109.47011 * 35.73234 * 10 8 6 13 13 H 1.48502 * 109.46918 * 155.73052 * 10 8 6 14 14 C 1.47022 * 108.69923 * 24.35526 * 5 4 2 15 15 C 1.54340 * 107.26661 * 358.58709 * 14 5 4 16 16 H 1.08995 * 110.67079 * 96.52100 * 15 14 5 17 17 C 1.53003 * 110.84892 * 219.67266 * 15 14 5 18 18 C 1.52998 * 109.47361 * 288.69215 * 17 15 14 19 19 N 1.46498 * 109.47274 * 179.97438 * 18 17 15 20 20 C 1.34773 * 120.00059 * 179.97438 * 19 18 17 21 21 O 1.21287 * 120.00160 * 0.02562 * 20 19 18 22 22 C 1.50703 * 120.00089 * 179.97438 * 20 19 18 23 23 C 1.53002 * 109.47031 * 180.02562 * 22 20 19 24 24 C 1.53778 * 113.61446 * 274.13910 * 23 22 20 25 25 C 1.53961 * 87.01681 * 220.05010 * 24 23 22 26 26 F 1.39895 * 113.53531 * 270.80597 * 25 24 23 27 27 F 1.39905 * 113.73903 * 139.94494 * 25 24 23 28 28 C 1.53777 * 87.11163 * 25.36390 * 25 24 23 29 29 H 1.08991 * 109.46861 * 182.42661 * 1 2 3 30 30 H 1.09000 * 109.46110 * 302.42702 * 1 2 3 31 31 H 1.09000 * 109.47063 * 62.42276 * 1 2 3 32 32 H 1.09006 * 110.37290 * 86.03669 * 4 2 1 33 33 H 1.09004 * 110.36903 * 323.71634 * 4 2 1 34 34 H 0.96991 * 120.00246 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.88281 * 118.12776 * 14 5 4 36 36 H 1.08999 * 109.88588 * 239.29734 * 14 5 4 37 37 H 1.09008 * 109.46756 * 48.69158 * 17 15 14 38 38 H 1.08996 * 109.46968 * 168.68933 * 17 15 14 39 39 H 1.09005 * 109.46659 * 300.00288 * 18 17 15 40 40 H 1.09005 * 109.47110 * 59.99851 * 18 17 15 41 41 H 0.97000 * 119.99890 * 0.02562 * 19 18 17 42 42 H 1.08995 * 109.47156 * 300.00426 * 22 20 19 43 43 H 1.09005 * 109.47053 * 60.00244 * 22 20 19 44 44 H 1.08994 * 112.84907 * 45.33255 * 23 22 20 45 45 H 1.08997 * 113.61363 * 334.56478 * 24 23 22 46 46 H 1.08992 * 113.61739 * 105.47180 * 24 23 22 47 47 H 1.09003 * 113.61228 * 220.08973 * 28 25 24 48 48 H 1.09000 * 113.61443 * 89.18669 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2007 5 7 3.4275 -1.2419 -0.7743 6 6 4.4642 -1.5650 -1.6087 7 1 4.4008 -1.3365 -2.6623 8 6 5.5967 -2.1861 -1.1001 9 7 6.7545 -2.0455 -1.7102 10 14 5.4774 -3.2217 0.4500 11 1 5.5796 -2.3420 1.6420 12 1 4.1745 -3.9338 0.4705 13 1 6.5835 -4.2124 0.4697 14 6 3.4667 -1.2785 0.6949 15 6 2.0870 -0.8078 1.2018 16 1 1.4465 -1.6616 1.4226 17 6 2.2359 0.0876 2.4335 18 6 2.6670 -0.7606 3.6317 19 7 2.8101 0.0968 4.8108 20 6 3.1839 -0.4367 5.9907 21 8 3.4022 -1.6267 6.0761 22 6 3.3317 0.4454 7.2036 23 6 3.7626 -0.4029 8.4017 24 6 2.5872 -1.0510 9.1522 25 6 3.3394 -0.7179 10.4536 26 9 4.2187 -1.7255 10.8642 27 9 2.5082 -0.2687 11.4854 28 6 4.0242 0.4180 9.6755 29 1 -0.3633 -1.0267 0.0435 30 1 -0.3632 0.5511 0.8675 31 1 -0.3633 0.4758 -0.9109 32 1 2.1553 -0.1713 -2.0840 33 1 1.4522 -1.6702 -1.4027 34 1 7.5457 -2.4798 -1.3550 35 1 3.6617 -2.2955 1.0354 36 1 4.2431 -0.6072 1.0619 37 1 2.9894 0.8509 2.2388 38 1 1.2815 0.5665 2.6520 39 1 1.9135 -1.5240 3.8262 40 1 3.6214 -1.2396 3.4131 41 1 2.6351 1.0484 4.7426 42 1 4.0858 1.2078 7.0086 43 1 2.3777 0.9254 7.4221 44 1 4.5641 -1.1008 8.1598 45 1 1.6471 -0.5108 9.0409 46 1 2.4868 -2.1202 8.9664 47 1 5.0821 0.5330 9.9113 48 1 3.4775 1.3605 9.7074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103159273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:36 Heat of formation + Delta-G solvation = -127.602375 kcal Electronic energy + Delta-G solvation = -28325.426022 eV Core-core repulsion = 24050.924561 eV Total energy + Delta-G solvation = -4274.501461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.82647 -48.18057 -40.98371 -40.03369 -38.76005 -36.44669 -35.09862 -33.21317 -32.63958 -31.09721 -28.65281 -27.69605 -27.19264 -25.66722 -24.26592 -23.41705 -21.85390 -21.56389 -20.88759 -20.73035 -19.01671 -18.49773 -18.06346 -17.57417 -17.52523 -17.25755 -16.91446 -16.63259 -16.29130 -15.74839 -15.50813 -15.33168 -15.05169 -14.77659 -14.63281 -14.50630 -14.47643 -14.29530 -14.20324 -13.69934 -13.49421 -13.47872 -13.31293 -13.12564 -12.91682 -12.70199 -12.63882 -12.30997 -12.14759 -12.12940 -12.11113 -11.85446 -11.73911 -11.53532 -11.43809 -11.37561 -11.04087 -10.82121 -10.78158 -10.09540 -9.15038 -8.23812 -5.42115 1.22358 1.30487 1.37963 1.68450 2.19191 2.33981 2.52958 2.85523 2.96510 3.26649 3.34115 3.37761 3.41841 3.59601 3.78463 3.87645 3.92543 4.13142 4.23183 4.26364 4.39049 4.42169 4.50410 4.52204 4.54974 4.56686 4.67987 4.70867 4.72380 4.76739 4.84142 4.85429 4.88974 4.90468 4.99628 5.11548 5.14854 5.21580 5.29587 5.32451 5.43426 5.46889 5.58810 5.65652 6.04793 6.61480 6.73006 7.32691 7.52349 8.08244 8.95959 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.002389 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.628132 B =11718.932316 C =13020.736361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 H 0.086 0.914 4 C 0.126 3.874 5 N -0.632 5.632 6 C -0.230 4.230 7 H 0.068 0.932 8 C -0.035 4.035 9 N -0.950 5.950 10 Si 0.943 3.057 11 H -0.280 1.280 12 H -0.281 1.281 13 H -0.311 1.311 14 C 0.115 3.885 15 C -0.084 4.084 16 H 0.084 0.916 17 C -0.102 4.102 18 C 0.117 3.883 19 N -0.716 5.716 20 C 0.500 3.500 21 O -0.593 6.593 22 C -0.116 4.116 23 C -0.093 4.093 24 C -0.158 4.158 25 C 0.233 3.767 26 F -0.200 7.200 27 F -0.201 7.201 28 C -0.140 4.140 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.002 0.998 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.421 0.579 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.083 0.917 45 H 0.135 0.865 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 13.182 23.305 30.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.103 4.103 3 H 0.105 0.895 4 C 0.002 3.998 5 N -0.358 5.358 6 C -0.359 4.359 7 H 0.086 0.914 8 C -0.230 4.230 9 N -0.597 5.597 10 Si 0.775 3.225 11 H -0.207 1.207 12 H -0.208 1.208 13 H -0.240 1.240 14 C -0.009 4.009 15 C -0.104 4.104 16 H 0.103 0.897 17 C -0.140 4.140 18 C -0.007 4.007 19 N -0.369 5.369 20 C 0.288 3.712 21 O -0.474 6.474 22 C -0.155 4.155 23 C -0.112 4.112 24 C -0.195 4.195 25 C 0.197 3.803 26 F -0.181 7.181 27 F -0.181 7.181 28 C -0.177 4.177 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.020 0.980 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.258 0.742 42 H 0.148 0.852 43 H 0.155 0.845 44 H 0.101 0.899 45 H 0.153 0.847 46 H 0.093 0.907 47 H 0.119 0.881 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.927 12.277 23.320 30.288 hybrid contribution 0.922 -1.354 0.308 1.667 sum -14.004 10.922 23.628 29.559 Atomic orbital electron populations 1.21661 0.91660 1.02299 1.03137 1.22312 0.97154 0.98554 0.92301 0.89518 1.21962 0.84351 0.96182 0.97286 1.45021 1.10382 1.78988 1.01402 1.18692 0.93279 1.31963 0.91956 0.91424 1.25330 0.94861 1.02183 1.00609 1.69990 0.98824 1.46453 1.44477 0.86050 0.75246 0.79843 0.81371 1.20665 1.20781 1.23993 1.21855 0.98103 0.96606 0.84344 1.22166 0.93986 0.98912 0.95297 0.89738 1.21682 1.04033 0.97331 0.90944 1.21263 0.99959 0.94052 0.85451 1.45908 1.69560 1.12924 1.08521 1.21523 0.75239 0.88810 0.85625 1.90731 1.51807 1.18884 1.85950 1.21670 1.06973 0.97703 0.89203 1.22062 0.98038 0.97658 0.93444 1.24277 1.00601 1.04061 0.90600 1.22635 0.85914 0.88573 0.83193 1.92983 1.70006 1.63012 1.92087 1.92987 1.72541 1.89065 1.63549 1.24168 1.04042 0.97908 0.91605 0.92843 0.89993 0.91706 0.93713 0.95461 0.92938 0.98029 0.95840 0.90696 0.86819 0.91890 0.95414 0.74155 0.85195 0.84463 0.89853 0.84698 0.90741 0.88057 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.30 71.98 0.67 -1.65 16 2 C -0.08 -2.20 3.09 -9.40 -0.03 -2.23 16 3 H 0.09 2.17 8.05 -2.39 -0.02 2.15 16 4 C 0.13 4.72 6.70 86.85 0.58 5.30 16 5 N -0.63 -30.85 3.28 -691.94 -2.27 -33.12 16 6 C -0.23 -13.61 10.57 84.03 0.89 -12.72 16 7 H 0.07 4.25 8.06 -2.91 -0.02 4.23 16 8 C -0.04 -2.16 5.43 84.86 0.46 -1.70 16 9 N -0.95 -61.65 13.97 21.65 0.30 -61.35 16 10 Si 0.94 50.67 24.29 68.60 1.67 52.33 16 11 H -0.28 -14.50 6.72 99.48 0.67 -13.84 16 12 H -0.28 -14.82 6.74 99.48 0.67 -14.15 16 13 H -0.31 -16.84 7.11 99.48 0.71 -16.13 16 14 C 0.12 4.95 3.94 86.73 0.34 5.29 16 15 C -0.08 -2.40 2.39 -9.60 -0.02 -2.42 16 16 H 0.08 2.32 8.01 -2.39 -0.02 2.30 16 17 C -0.10 -2.05 4.73 30.59 0.14 -1.90 16 18 C 0.12 2.82 5.56 86.38 0.48 3.30 16 19 N -0.72 -11.99 5.56 -463.05 -2.57 -14.57 16 20 C 0.50 9.90 7.83 87.66 0.69 10.58 16 21 O -0.59 -18.70 15.79 -3.05 -0.05 -18.75 16 22 C -0.12 -0.99 5.52 29.85 0.16 -0.83 16 23 C -0.09 -1.21 3.09 -10.27 -0.03 -1.24 16 24 C -0.16 -2.20 7.44 31.18 0.23 -1.97 16 25 C 0.23 3.67 3.28 31.18 0.10 3.77 16 26 F -0.20 -4.37 17.38 44.97 0.78 -3.59 16 27 F -0.20 -3.52 17.42 44.97 0.78 -2.74 16 28 C -0.14 -1.21 7.43 31.12 0.23 -0.98 16 29 H 0.05 0.99 8.11 -2.39 -0.02 0.97 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.03 1.01 8.04 -2.39 -0.02 0.99 16 34 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 35 H 0.00 0.11 3.73 -2.38 -0.01 0.10 16 36 H 0.02 1.08 7.38 -2.39 -0.02 1.06 16 37 H 0.07 1.54 7.94 -2.38 -0.02 1.52 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.03 0.91 7.68 -2.38 -0.02 0.89 16 41 H 0.42 3.41 8.47 -92.71 -0.79 2.63 16 42 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.14 0.19 7.88 -2.38 -0.02 0.17 16 44 H 0.08 1.63 7.73 -2.39 -0.02 1.61 16 45 H 0.13 1.15 7.92 -2.39 -0.02 1.13 16 46 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.10 0.81 8.14 -2.39 -0.02 0.80 16 48 H 0.15 0.34 8.10 -2.39 -0.02 0.32 16 Total: -1.00 -84.19 385.09 3.64 -80.55 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: 0.09 Total: 0.62 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 4.90 Total: 0.60 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -4.54 Total: -109.03 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.05 Total: -18.75 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 1.56 Total: -6.33 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 1.67 Total: 52.33 kcal Total: -84.19 3.64 -80.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103159273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.049 kcal (2) G-P(sol) polarization free energy of solvation -84.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds