Wall clock time and date at job start Tue Mar 31 2020 17:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.78091 * 2 1 4 4 C 1.54340 * 110.84957 * 236.93147 * 2 1 3 5 5 N 1.47025 * 107.26610 * 219.67324 * 4 2 1 6 6 C 1.36931 * 125.64663 * 178.85078 * 5 4 2 7 7 H 1.08002 * 120.00098 * 179.69469 * 6 5 4 8 8 C 1.38812 * 120.00429 * 359.69353 * 6 5 4 9 9 N 1.31624 * 119.99535 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00187 * 180.27849 * 8 6 5 11 11 H 1.48497 * 109.47173 * 179.72427 * 10 8 6 12 12 H 1.48506 * 109.46866 * 299.71963 * 10 8 6 13 13 H 1.48501 * 109.47438 * 59.72083 * 10 8 6 14 14 C 1.47428 * 108.70179 * 358.58750 * 5 4 2 15 15 C 1.54903 * 104.83203 * 24.35447 * 14 5 4 16 16 H 1.09001 * 111.00569 * 81.06485 * 15 14 5 17 17 C 1.53000 * 111.00557 * 204.91799 * 15 14 5 18 18 C 1.53003 * 109.46873 * 293.54781 * 17 15 14 19 19 N 1.46504 * 109.46963 * 180.02562 * 18 17 15 20 20 C 1.34778 * 119.99560 * 180.02562 * 19 18 17 21 21 O 1.21276 * 120.00191 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99714 * 179.97438 * 20 19 18 23 23 C 1.53000 * 112.85124 * 50.32717 * 22 20 19 24 24 F 1.39908 * 109.46976 * 309.66819 * 23 22 20 25 25 F 1.39895 * 109.47536 * 69.66634 * 23 22 20 26 26 C 1.53784 * 113.61133 * 279.13351 * 22 20 19 27 27 C 1.53959 * 87.01452 * 220.04811 * 26 22 20 28 28 C 1.53780 * 113.61320 * 181.52343 * 22 20 19 29 29 H 1.08999 * 109.47345 * 296.76093 * 1 2 3 30 30 H 1.09006 * 109.47164 * 56.76398 * 1 2 3 31 31 H 1.09005 * 109.47078 * 176.75759 * 1 2 3 32 32 H 1.08999 * 109.99167 * 100.19515 * 4 2 1 33 33 H 1.09002 * 109.78131 * 339.02930 * 4 2 1 34 34 H 0.97005 * 119.99717 * 180.02562 * 9 8 6 35 35 H 1.08997 * 110.36427 * 143.19155 * 14 5 4 36 36 H 1.09000 * 110.36373 * 265.40970 * 14 5 4 37 37 H 1.09000 * 109.47334 * 53.54696 * 17 15 14 38 38 H 1.09001 * 109.47525 * 173.54961 * 17 15 14 39 39 H 1.08999 * 109.47272 * 299.99561 * 18 17 15 40 40 H 1.08992 * 109.47465 * 59.99688 * 18 17 15 41 41 H 0.96996 * 119.99838 * 359.97438 * 19 18 17 42 42 H 1.09000 * 109.47313 * 189.67169 * 23 22 20 43 43 H 1.08995 * 113.61118 * 334.56185 * 26 22 20 44 44 H 1.08992 * 113.61827 * 105.46886 * 26 22 20 45 45 H 1.09003 * 113.53310 * 270.80412 * 27 26 22 46 46 H 1.09006 * 113.66183 * 139.93422 * 27 26 22 47 47 H 1.09003 * 113.61578 * 254.52430 * 28 22 20 48 48 H 1.08990 * 113.61559 * 25.34748 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0793 -0.7870 -1.2087 5 7 3.2445 -1.5508 -0.7391 6 6 4.0042 -2.3969 -1.5019 7 1 4.8468 -2.9103 -1.0626 8 6 3.6915 -2.5950 -2.8397 9 7 2.6643 -1.9698 -3.3749 10 14 4.7232 -3.7553 -3.8782 11 1 4.1819 -3.7965 -5.2604 12 1 6.1277 -3.2740 -3.9109 13 1 4.6804 -5.1177 -3.2890 14 6 3.4633 -1.2499 0.6875 15 6 2.0790 -0.7955 1.2137 16 1 1.4451 -1.6536 1.4374 17 6 2.2278 0.1079 2.4395 18 6 2.8018 -0.7023 3.6035 19 7 2.9437 0.1626 4.7775 20 6 3.4340 -0.3388 5.9285 21 8 3.7573 -1.5059 5.9925 22 6 3.5805 0.5511 7.1359 23 6 2.3054 1.3341 7.4551 24 9 1.8483 1.9729 6.2974 25 9 1.3225 0.4547 7.9215 26 6 4.8477 1.4219 7.1092 27 6 4.9835 1.1289 8.6145 28 6 4.1877 -0.1613 8.3560 29 1 -0.3634 0.4627 0.9176 30 1 -0.3634 0.5633 -0.8596 31 1 -0.3633 -1.0261 -0.0581 32 1 2.3814 -0.0970 -1.9965 33 1 1.3156 -1.4687 -1.5830 34 1 2.4455 -2.1085 -4.3097 35 1 3.7959 -2.1427 1.2168 36 1 4.1945 -0.4492 0.7985 37 1 2.9008 0.9323 2.2038 38 1 1.2517 0.5044 2.7193 39 1 2.1287 -1.5266 3.8393 40 1 3.7777 -1.0989 3.3238 41 1 2.6855 1.0961 4.7261 42 1 2.5190 2.0796 8.2211 43 1 5.6539 1.0013 6.5081 44 1 4.6526 2.4701 6.8832 45 1 4.4595 1.8461 9.2464 46 1 6.0103 0.9519 8.9349 47 1 3.4604 -0.3892 9.1353 48 1 4.8119 -1.0163 8.0965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103362255.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:28 Heat of formation + Delta-G solvation = -106.878320 kcal Electronic energy + Delta-G solvation = -29213.620328 eV Core-core repulsion = 24940.017530 eV Total energy + Delta-G solvation = -4273.602799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.50580 -47.47943 -40.68186 -38.46919 -37.82723 -35.22200 -33.20781 -31.26564 -30.62019 -29.02365 -26.87334 -26.23848 -25.69429 -25.01739 -23.86865 -22.06007 -21.26281 -19.97819 -19.49838 -19.19572 -18.33877 -17.63678 -17.37354 -16.80328 -16.45278 -15.92519 -15.46078 -15.15235 -14.91001 -14.64819 -14.26205 -14.13194 -13.82874 -13.80598 -13.57799 -13.15826 -13.01140 -12.98364 -12.65355 -12.50397 -12.30087 -12.14128 -11.86341 -11.69565 -11.66244 -11.35969 -11.18055 -11.03513 -10.99781 -10.92786 -10.74412 -10.70749 -10.07281 -9.96757 -9.83935 -9.77943 -9.59837 -9.43943 -9.09252 -8.54337 -6.76168 -5.65362 -2.98337 2.31975 2.93752 3.16815 3.44292 3.48230 3.49576 3.55786 3.69506 3.83531 4.14802 4.26277 4.49446 4.54911 4.63246 4.83872 4.96150 5.11852 5.15345 5.22847 5.32989 5.35556 5.40861 5.50584 5.51090 5.55855 5.65148 5.73263 5.78970 5.80368 5.96983 6.03674 6.14199 6.26446 6.29680 6.38763 6.41404 6.56311 6.68192 6.70891 6.84768 7.06142 7.38724 7.62816 7.70901 7.89738 8.05813 8.32686 9.28577 9.89039 10.55905 11.46218 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.002481 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.846313 B =11283.078396 C =12195.418710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.063 0.937 4 C 0.183 3.817 5 N -0.607 5.607 6 C -0.227 4.227 7 H 0.076 0.924 8 C -0.010 4.010 9 N -0.923 5.923 10 Si 0.911 3.089 11 H -0.291 1.291 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.140 3.860 15 C -0.095 4.095 16 H 0.076 0.924 17 C -0.115 4.115 18 C 0.116 3.884 19 N -0.722 5.722 20 C 0.526 3.474 21 O -0.529 6.529 22 C -0.175 4.175 23 C 0.290 3.710 24 F -0.197 7.197 25 F -0.195 7.195 26 C -0.111 4.111 27 C -0.145 4.145 28 C -0.103 4.103 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.252 0.748 35 H 0.037 0.963 36 H 0.016 0.984 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.403 0.597 42 H 0.123 0.877 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 12.035 25.241 27.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 H 0.082 0.918 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.355 4.355 7 H 0.094 0.906 8 C -0.206 4.206 9 N -0.571 5.571 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.212 1.212 13 H -0.212 1.212 14 C 0.013 3.987 15 C -0.115 4.115 16 H 0.095 0.905 17 C -0.153 4.153 18 C -0.007 4.007 19 N -0.376 5.376 20 C 0.310 3.690 21 O -0.405 6.405 22 C -0.179 4.179 23 C 0.236 3.764 24 F -0.178 7.178 25 F -0.176 7.176 26 C -0.149 4.149 27 C -0.183 4.183 28 C -0.141 4.141 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.241 0.759 42 H 0.141 0.859 43 H 0.119 0.881 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.321 11.094 24.997 27.350 hybrid contribution 0.187 -0.167 -0.849 0.885 sum -0.134 10.927 24.148 26.505 Atomic orbital electron populations 1.21673 0.95555 1.01545 1.00260 1.22483 0.94950 0.98925 0.97001 0.91825 1.21213 0.89160 0.93019 0.90743 1.44469 1.32746 1.51308 1.04769 1.19028 1.07510 1.17671 0.91289 0.90578 1.24794 0.98487 1.00383 0.96912 1.69965 1.28739 1.45731 1.12649 0.86206 0.79435 0.80647 0.79528 1.21638 1.21239 1.21190 1.21605 0.93340 0.97031 0.86691 1.22323 0.98857 0.97578 0.92723 0.90543 1.21730 1.00897 0.98641 0.94072 1.21529 1.02016 0.93311 0.83821 1.46363 1.64652 1.15094 1.11519 1.19812 0.77679 0.87869 0.83594 1.90720 1.49225 1.16681 1.83885 1.23403 0.96264 0.99781 0.98429 1.21523 0.83193 0.87417 0.84218 1.92890 1.90261 1.82418 1.52227 1.93029 1.64735 1.71241 1.88573 1.22912 0.94457 0.99416 0.98090 1.22999 1.01976 0.97560 0.95725 1.22806 0.99276 0.98120 0.93852 0.93815 0.93012 0.92766 0.94310 0.93418 0.93803 0.94491 0.96595 0.91374 0.91608 0.91424 0.90838 0.75894 0.85932 0.88136 0.89780 0.89607 0.89904 0.90081 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.16 37.16 0.34 -1.78 16 2 C -0.11 -2.12 3.01 -88.78 -0.27 -2.38 16 3 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 4 C 0.18 4.52 4.98 -3.05 -0.02 4.50 16 5 N -0.61 -15.92 3.39 -170.06 -0.58 -16.50 16 6 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 7 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 8 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 9 N -0.92 -27.65 10.31 55.49 0.57 -27.08 16 10 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.14 2.94 5.89 -2.53 -0.01 2.93 16 15 C -0.09 -1.64 2.52 -88.47 -0.22 -1.86 16 16 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 17 C -0.12 -1.54 4.85 -26.73 -0.13 -1.67 16 18 C 0.12 1.59 5.52 -4.04 -0.02 1.57 16 19 N -0.72 -8.58 5.26 -60.29 -0.32 -8.89 16 20 C 0.53 6.62 6.89 -10.98 -0.08 6.55 16 21 O -0.53 -8.71 15.91 5.56 0.09 -8.63 16 22 C -0.17 -1.44 0.91 -154.85 -0.14 -1.58 16 23 C 0.29 2.08 4.57 37.16 0.17 2.24 16 24 F -0.20 -1.63 14.57 2.25 0.03 -1.60 16 25 F -0.19 -1.92 17.06 2.25 0.04 -1.89 16 26 C -0.11 -0.64 7.21 -25.82 -0.19 -0.82 16 27 C -0.15 -0.64 7.74 -25.83 -0.20 -0.84 16 28 C -0.10 -0.74 6.92 -25.92 -0.18 -0.92 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.04 1.06 7.52 -51.93 -0.39 0.67 16 33 H 0.05 1.30 6.99 -51.93 -0.36 0.94 16 34 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.02 0.34 8.01 -51.93 -0.42 -0.08 16 37 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.11 7.46 -51.93 -0.39 0.73 16 41 H 0.40 4.02 6.07 -40.82 -0.25 3.77 16 42 H 0.12 0.40 7.34 -51.93 -0.38 0.02 16 43 H 0.10 0.68 8.09 -51.93 -0.42 0.25 16 44 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 45 H 0.09 0.22 7.64 -51.93 -0.40 -0.18 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.08 0.54 7.94 -51.93 -0.41 0.12 16 48 H 0.11 0.97 7.45 -51.93 -0.39 0.58 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -33.93 383.09 -8.58 -42.51 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.98 Total: -0.20 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.19 Total: -1.11 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.32 Total: -52.47 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.07 Total: -3.48 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.93 -8.58 -42.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103362255.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.365 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds