Wall clock time and date at job start Tue Mar 31 2020 17:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.78091 * 2 1 4 4 C 1.54340 * 110.84957 * 236.93147 * 2 1 3 5 5 N 1.47025 * 107.26610 * 219.67324 * 4 2 1 6 6 C 1.36931 * 125.64663 * 178.85078 * 5 4 2 7 7 H 1.08002 * 120.00098 * 179.69469 * 6 5 4 8 8 C 1.38812 * 120.00429 * 359.69353 * 6 5 4 9 9 N 1.31624 * 119.99535 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00187 * 180.27849 * 8 6 5 11 11 H 1.48497 * 109.47173 * 179.72427 * 10 8 6 12 12 H 1.48506 * 109.46866 * 299.71963 * 10 8 6 13 13 H 1.48501 * 109.47438 * 59.72083 * 10 8 6 14 14 C 1.47428 * 108.70179 * 358.58750 * 5 4 2 15 15 C 1.54903 * 104.83203 * 24.35447 * 14 5 4 16 16 H 1.09001 * 111.00569 * 81.06485 * 15 14 5 17 17 C 1.53000 * 111.00557 * 204.91799 * 15 14 5 18 18 C 1.53003 * 109.46873 * 293.54781 * 17 15 14 19 19 N 1.46504 * 109.46963 * 180.02562 * 18 17 15 20 20 C 1.34778 * 119.99560 * 180.02562 * 19 18 17 21 21 O 1.21276 * 120.00191 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99714 * 179.97438 * 20 19 18 23 23 C 1.53000 * 112.85124 * 50.32717 * 22 20 19 24 24 F 1.39908 * 109.46976 * 309.66819 * 23 22 20 25 25 F 1.39895 * 109.47536 * 69.66634 * 23 22 20 26 26 C 1.53784 * 113.61133 * 279.13351 * 22 20 19 27 27 C 1.53959 * 87.01452 * 220.04811 * 26 22 20 28 28 C 1.53780 * 113.61320 * 181.52343 * 22 20 19 29 29 H 1.08999 * 109.47345 * 296.76093 * 1 2 3 30 30 H 1.09006 * 109.47164 * 56.76398 * 1 2 3 31 31 H 1.09005 * 109.47078 * 176.75759 * 1 2 3 32 32 H 1.08999 * 109.99167 * 100.19515 * 4 2 1 33 33 H 1.09002 * 109.78131 * 339.02930 * 4 2 1 34 34 H 0.97005 * 119.99717 * 180.02562 * 9 8 6 35 35 H 1.08997 * 110.36427 * 143.19155 * 14 5 4 36 36 H 1.09000 * 110.36373 * 265.40970 * 14 5 4 37 37 H 1.09000 * 109.47334 * 53.54696 * 17 15 14 38 38 H 1.09001 * 109.47525 * 173.54961 * 17 15 14 39 39 H 1.08999 * 109.47272 * 299.99561 * 18 17 15 40 40 H 1.08992 * 109.47465 * 59.99688 * 18 17 15 41 41 H 0.96996 * 119.99838 * 359.97438 * 19 18 17 42 42 H 1.09000 * 109.47313 * 189.67169 * 23 22 20 43 43 H 1.08995 * 113.61118 * 334.56185 * 26 22 20 44 44 H 1.08992 * 113.61827 * 105.46886 * 26 22 20 45 45 H 1.09003 * 113.53310 * 270.80412 * 27 26 22 46 46 H 1.09006 * 113.66183 * 139.93422 * 27 26 22 47 47 H 1.09003 * 113.61578 * 254.52430 * 28 22 20 48 48 H 1.08990 * 113.61559 * 25.34748 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0793 -0.7870 -1.2087 5 7 3.2445 -1.5508 -0.7391 6 6 4.0042 -2.3969 -1.5019 7 1 4.8468 -2.9103 -1.0626 8 6 3.6915 -2.5950 -2.8397 9 7 2.6643 -1.9698 -3.3749 10 14 4.7232 -3.7553 -3.8782 11 1 4.1819 -3.7965 -5.2604 12 1 6.1277 -3.2740 -3.9109 13 1 4.6804 -5.1177 -3.2890 14 6 3.4633 -1.2499 0.6875 15 6 2.0790 -0.7955 1.2137 16 1 1.4451 -1.6536 1.4374 17 6 2.2278 0.1079 2.4395 18 6 2.8018 -0.7023 3.6035 19 7 2.9437 0.1626 4.7775 20 6 3.4340 -0.3388 5.9285 21 8 3.7573 -1.5059 5.9925 22 6 3.5805 0.5511 7.1359 23 6 2.3054 1.3341 7.4551 24 9 1.8483 1.9729 6.2974 25 9 1.3225 0.4547 7.9215 26 6 4.8477 1.4219 7.1092 27 6 4.9835 1.1289 8.6145 28 6 4.1877 -0.1613 8.3560 29 1 -0.3634 0.4627 0.9176 30 1 -0.3634 0.5633 -0.8596 31 1 -0.3633 -1.0261 -0.0581 32 1 2.3814 -0.0970 -1.9965 33 1 1.3156 -1.4687 -1.5830 34 1 2.4455 -2.1085 -4.3097 35 1 3.7959 -2.1427 1.2168 36 1 4.1945 -0.4492 0.7985 37 1 2.9008 0.9323 2.2038 38 1 1.2517 0.5044 2.7193 39 1 2.1287 -1.5266 3.8393 40 1 3.7777 -1.0989 3.3238 41 1 2.6855 1.0961 4.7261 42 1 2.5190 2.0796 8.2211 43 1 5.6539 1.0013 6.5081 44 1 4.6526 2.4701 6.8832 45 1 4.4595 1.8461 9.2464 46 1 6.0103 0.9519 8.9349 47 1 3.4604 -0.3892 9.1353 48 1 4.8119 -1.0163 8.0965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103362255.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:27 Heat of formation + Delta-G solvation = -128.115516 kcal Electronic energy + Delta-G solvation = -29214.541242 eV Core-core repulsion = 24940.017530 eV Total energy + Delta-G solvation = -4274.523712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.09092 -48.08563 -41.47687 -39.87624 -38.82346 -36.48892 -35.02332 -32.59715 -32.52416 -29.75808 -28.34353 -27.44174 -26.73315 -26.05734 -25.12956 -23.52161 -22.14765 -21.45550 -20.76744 -20.27148 -19.02633 -18.87139 -18.23452 -18.06094 -17.15687 -17.05383 -16.81512 -16.42653 -15.97174 -15.71921 -15.58570 -15.35292 -15.02248 -14.85412 -14.48804 -14.40311 -14.17338 -13.88516 -13.72581 -13.52639 -13.44807 -13.38218 -13.10374 -12.95390 -12.80336 -12.73186 -12.71333 -12.43998 -12.28804 -12.19598 -11.95137 -11.80872 -11.48440 -11.44477 -11.39608 -11.27637 -11.17683 -10.77477 -10.70184 -10.17098 -8.89869 -7.85959 -5.21537 1.40374 1.42517 1.46340 1.52634 2.05320 2.47989 2.61112 2.97517 3.21425 3.28359 3.31183 3.61088 3.64977 3.74273 3.75676 3.91830 3.99796 4.02481 4.08339 4.24382 4.30583 4.39715 4.48935 4.59150 4.69620 4.70667 4.72054 4.75187 4.80033 4.93736 4.98645 4.99112 5.01353 5.08828 5.10407 5.14770 5.25447 5.34631 5.38220 5.40550 5.45145 5.51424 5.73735 5.82422 6.19952 6.44989 7.09997 7.12093 7.77811 8.42590 9.23870 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.002481 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.846313 B =11283.078396 C =12195.418710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.080 0.920 4 C 0.190 3.810 5 N -0.631 5.631 6 C -0.246 4.246 7 H 0.078 0.922 8 C -0.067 4.067 9 N -0.950 5.950 10 Si 0.979 3.021 11 H -0.292 1.292 12 H -0.276 1.276 13 H -0.278 1.278 14 C 0.134 3.866 15 C -0.080 4.080 16 H 0.070 0.930 17 C -0.098 4.098 18 C 0.121 3.879 19 N -0.714 5.714 20 C 0.516 3.484 21 O -0.579 6.579 22 C -0.178 4.178 23 C 0.287 3.713 24 F -0.203 7.203 25 F -0.214 7.214 26 C -0.107 4.107 27 C -0.126 4.126 28 C -0.112 4.112 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.000 1.000 33 H 0.011 0.989 34 H 0.247 0.753 35 H 0.031 0.969 36 H 0.024 0.976 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.415 0.585 42 H 0.175 0.825 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 14.465 27.697 31.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.099 0.901 4 C 0.065 3.935 5 N -0.357 5.357 6 C -0.376 4.376 7 H 0.096 0.904 8 C -0.260 4.260 9 N -0.599 5.599 10 Si 0.807 3.193 11 H -0.218 1.218 12 H -0.202 1.202 13 H -0.204 1.204 14 C 0.009 3.991 15 C -0.100 4.100 16 H 0.088 0.912 17 C -0.136 4.136 18 C -0.003 4.003 19 N -0.368 5.368 20 C 0.302 3.698 21 O -0.458 6.458 22 C -0.182 4.182 23 C 0.234 3.766 24 F -0.184 7.184 25 F -0.195 7.195 26 C -0.144 4.144 27 C -0.163 4.163 28 C -0.150 4.150 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.018 0.982 33 H 0.029 0.971 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.255 0.745 42 H 0.192 0.808 43 H 0.103 0.897 44 H 0.129 0.871 45 H 0.135 0.865 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.366 13.563 27.487 30.653 hybrid contribution 0.242 -0.970 -1.608 1.893 sum -0.124 12.593 25.879 28.781 Atomic orbital electron populations 1.21631 0.93191 1.01251 1.02340 1.22370 0.96783 0.98660 0.94219 0.90130 1.21016 0.87935 0.91897 0.92649 1.44823 1.32920 1.51159 1.06824 1.19424 1.07933 1.18111 0.92087 0.90445 1.25666 0.99905 1.02262 0.98149 1.70199 1.30217 1.47052 1.12455 0.85151 0.78064 0.78684 0.77438 1.21753 1.20234 1.20437 1.21801 0.95965 0.97044 0.84260 1.22190 0.95896 0.97965 0.93901 0.91189 1.21576 1.02711 0.97700 0.91629 1.21300 1.00634 0.93488 0.84858 1.46290 1.64257 1.15393 1.10877 1.20719 0.76364 0.87908 0.84774 1.90693 1.51233 1.19080 1.84820 1.23585 0.98282 0.99981 0.96324 1.22036 0.81686 0.87821 0.85091 1.92867 1.90273 1.82350 1.52917 1.92995 1.65540 1.72189 1.88765 1.22954 0.92326 1.00129 0.99027 1.23007 1.02240 0.95956 0.95105 1.22826 0.99648 0.98829 0.93701 0.90058 0.92756 0.94110 0.98160 0.97077 0.94399 0.95113 0.95811 0.90035 0.88893 0.92763 0.92859 0.74460 0.80809 0.89726 0.87135 0.86452 0.89305 0.89571 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 9.16 71.98 0.66 -3.15 16 2 C -0.10 -3.65 3.01 -9.60 -0.03 -3.68 16 3 H 0.08 2.67 8.04 -2.39 -0.02 2.65 16 4 C 0.19 9.70 4.98 86.73 0.43 10.13 16 5 N -0.63 -34.15 3.39 -691.96 -2.35 -36.50 16 6 C -0.25 -14.57 10.28 84.03 0.86 -13.70 16 7 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 8 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 9 N -0.95 -59.15 10.31 21.65 0.22 -58.92 16 10 Si 0.98 47.54 29.55 68.60 2.03 49.56 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 14 C 0.13 5.72 5.89 86.85 0.51 6.24 16 15 C -0.08 -2.68 2.52 -9.40 -0.02 -2.70 16 16 H 0.07 2.46 8.05 -2.39 -0.02 2.45 16 17 C -0.10 -2.38 4.85 30.60 0.15 -2.23 16 18 C 0.12 3.23 5.52 86.38 0.48 3.71 16 19 N -0.71 -16.01 5.26 -463.06 -2.44 -18.45 16 20 C 0.52 12.80 6.89 87.66 0.60 13.41 16 21 O -0.58 -19.80 15.91 -3.02 -0.05 -19.85 16 22 C -0.18 -2.58 0.91 -52.40 -0.05 -2.62 16 23 C 0.29 3.15 4.57 71.98 0.33 3.48 16 24 F -0.20 -2.67 14.57 44.97 0.66 -2.01 16 25 F -0.21 -3.78 17.06 44.97 0.77 -3.01 16 26 C -0.11 -0.92 7.21 31.18 0.22 -0.70 16 27 C -0.13 -0.68 7.74 31.18 0.24 -0.44 16 28 C -0.11 -1.48 6.92 31.12 0.22 -1.27 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.04 1.33 8.07 -2.38 -0.02 1.31 16 32 H 0.00 0.01 7.52 -2.39 -0.02 -0.01 16 33 H 0.01 0.63 6.99 -2.39 -0.02 0.62 16 34 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 35 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 36 H 0.02 0.99 8.01 -2.39 -0.02 0.97 16 37 H 0.08 1.83 8.10 -2.39 -0.02 1.81 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 1.64 7.46 -2.39 -0.02 1.62 16 41 H 0.41 7.19 6.07 -92.71 -0.56 6.63 16 42 H 0.18 0.18 7.34 -2.39 -0.02 0.17 16 43 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 44 H 0.11 0.40 8.10 -2.39 -0.02 0.38 16 45 H 0.12 -0.05 7.64 -2.39 -0.02 -0.06 16 46 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 47 H 0.09 1.02 7.94 -2.39 -0.02 1.00 16 48 H 0.08 1.52 7.45 -2.39 -0.02 1.50 16 Total: -1.00 -79.38 383.09 4.30 -75.08 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.39 Total: 11.13 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 5.07 Total: 2.97 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -4.56 Total: -113.87 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.05 Total: -19.85 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 1.42 Total: -5.02 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.56 kcal Total: -79.38 4.30 -75.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103362255.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.031 kcal (2) G-P(sol) polarization free energy of solvation -79.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds