Wall clock time and date at job start Tue Mar 31 2020 17:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.91676 * 2 1 4 4 C 1.55126 * 111.16516 * 236.07383 * 2 1 3 5 5 N 1.47423 * 104.94358 * 205.13160 * 4 2 1 6 6 C 1.36939 * 125.64794 * 203.96209 * 5 4 2 7 7 H 1.07995 * 119.99482 * 180.02562 * 6 5 4 8 8 C 1.38806 * 119.99836 * 0.04382 * 6 5 4 9 9 N 1.31614 * 120.00098 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99882 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47079 * 89.99947 * 10 8 6 12 12 H 1.48498 * 109.47069 * 210.00117 * 10 8 6 13 13 H 1.48505 * 109.46807 * 329.99975 * 10 8 6 14 14 C 1.47024 * 108.70150 * 24.00311 * 5 4 2 15 15 C 1.54322 * 107.27413 * 358.93733 * 14 5 4 16 16 H 1.08998 * 110.71904 * 96.34638 * 15 14 5 17 17 C 1.52996 * 110.71970 * 219.44782 * 15 14 5 18 18 C 1.53001 * 109.47105 * 291.15358 * 17 15 14 19 19 N 1.46499 * 109.47059 * 180.02562 * 18 17 15 20 20 C 1.34780 * 120.00178 * 180.02562 * 19 18 17 21 21 O 1.21285 * 119.99352 * 359.97438 * 20 19 18 22 22 C 1.50691 * 120.00341 * 179.97438 * 20 19 18 23 23 C 1.52996 * 112.85068 * 311.19709 * 22 20 19 24 24 C 1.53782 * 113.61657 * 179.97438 * 22 20 19 25 25 C 1.53781 * 87.08260 * 219.93614 * 24 22 20 26 26 F 1.39905 * 113.61459 * 139.98223 * 25 24 22 27 27 F 1.39901 * 113.61682 * 270.79882 * 25 24 22 28 28 C 1.53780 * 87.17569 * 25.39011 * 25 24 22 29 29 H 1.08998 * 109.47011 * 296.10310 * 1 2 3 30 30 H 1.09005 * 109.46853 * 56.09756 * 1 2 3 31 31 H 1.08989 * 109.47117 * 176.09685 * 1 2 3 32 32 H 1.08991 * 110.41921 * 86.20307 * 4 2 1 33 33 H 1.09001 * 110.19996 * 323.94834 * 4 2 1 34 34 H 0.97006 * 119.99909 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.87776 * 239.52212 * 14 5 4 36 36 H 1.09000 * 110.01263 * 118.43436 * 14 5 4 37 37 H 1.09009 * 109.47008 * 171.15910 * 17 15 14 38 38 H 1.08995 * 109.47585 * 51.16032 * 17 15 14 39 39 H 1.08994 * 109.47102 * 60.00625 * 18 17 15 40 40 H 1.08995 * 109.47450 * 300.00757 * 18 17 15 41 41 H 0.96997 * 120.00239 * 0.02562 * 19 18 17 42 42 H 1.08993 * 109.47285 * 288.79845 * 23 22 20 43 43 H 1.08999 * 109.47324 * 48.80170 * 23 22 20 44 44 H 1.09006 * 109.47299 * 168.80192 * 23 22 20 45 45 H 1.09001 * 113.61250 * 105.38431 * 24 22 20 46 46 H 1.09002 * 113.68969 * 334.49378 * 24 22 20 47 47 H 1.09000 * 113.61461 * 89.15487 * 28 25 24 48 48 H 1.08995 * 113.61894 * 220.06224 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0901 -0.8074 -1.2003 5 7 3.4299 -1.2473 -0.7705 6 6 4.4675 -1.5741 -1.6022 7 1 5.4142 -1.8868 -1.1872 8 6 4.3025 -1.5031 -2.9786 9 7 3.1487 -1.1222 -3.4843 10 14 5.7183 -1.9482 -4.1132 11 1 5.6612 -3.3978 -4.4307 12 1 5.6126 -1.1620 -5.3685 13 1 7.0064 -1.6387 -3.4421 14 6 3.4671 -1.2781 0.6989 15 6 2.0861 -0.8079 1.2022 16 1 1.4450 -1.6613 1.4229 17 6 2.2350 0.0876 2.4338 18 6 2.7237 -0.7499 3.6173 19 7 2.8656 0.1075 4.7967 20 6 3.2868 -0.4172 5.9645 21 8 3.5479 -1.5992 6.0390 22 6 3.4334 0.4648 7.1775 23 6 4.2134 1.7488 6.8878 24 6 3.9221 -0.2843 8.4285 25 6 2.9244 0.5668 9.2317 26 9 2.2591 -0.1467 10.2345 27 9 3.4600 1.7755 9.6892 28 6 2.1133 0.7051 7.9325 29 1 -0.3633 0.4522 0.9228 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3633 -1.0252 -0.0699 32 1 2.1643 -0.1733 -2.0837 33 1 1.4547 -1.6695 -1.4033 34 1 3.0333 -1.0730 -4.4463 35 1 4.2434 -0.6057 1.0641 36 1 3.6625 -2.2927 1.0460 37 1 1.2705 0.5333 2.6777 38 1 2.9572 0.8767 2.2242 39 1 3.6880 -1.1954 3.3735 40 1 2.0015 -1.5389 3.8269 41 1 2.6565 1.0528 4.7371 42 1 5.2649 1.5078 6.7321 43 1 3.8128 2.2229 5.9918 44 1 4.1182 2.4304 7.7331 45 1 4.9646 -0.0856 8.6769 46 1 3.6835 -1.3478 8.4232 47 1 1.3785 -0.0873 7.7901 48 1 1.6977 1.7013 7.7811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103634355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:33 Heat of formation + Delta-G solvation = -105.125930 kcal Electronic energy + Delta-G solvation = -28632.570308 eV Core-core repulsion = 24359.043499 eV Total energy + Delta-G solvation = -4273.526809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -49.25972 -47.56967 -40.70746 -38.36391 -37.56943 -35.35010 -33.30478 -31.37471 -30.70459 -29.67598 -27.09230 -26.73981 -25.74131 -24.88541 -23.84572 -22.14902 -21.52353 -19.90293 -19.47795 -19.08565 -18.40770 -17.23662 -16.92613 -16.78702 -16.32342 -15.87379 -15.67539 -15.16334 -14.62332 -14.54611 -14.29708 -14.10412 -14.02075 -13.92083 -13.68709 -13.50820 -13.03100 -12.88197 -12.83906 -12.70339 -12.23700 -12.09886 -12.07016 -11.76964 -11.63351 -11.52393 -11.45771 -11.14440 -11.04472 -10.92176 -10.85098 -10.76135 -10.15999 -10.04134 -9.89675 -9.81355 -9.72387 -9.32856 -9.21195 -8.64136 -6.81250 -5.64232 -3.05689 2.28951 2.82231 3.04180 3.31456 3.40283 3.45282 3.47054 3.71315 3.72308 3.96854 4.45930 4.49779 4.58896 4.80526 4.90545 4.95833 5.00733 5.06324 5.17575 5.25329 5.30868 5.33522 5.45053 5.51048 5.53825 5.54572 5.63830 5.68780 5.74924 5.90431 5.94417 6.11381 6.20795 6.24125 6.28955 6.32522 6.54346 6.60865 6.68607 6.82177 7.01013 7.26890 7.55511 7.64886 7.87704 7.97106 8.37915 9.23806 9.84768 10.50068 11.39451 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.002113 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.059826 B =13246.943778 C =13879.682832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.067 0.933 4 C 0.159 3.841 5 N -0.606 5.606 6 C -0.221 4.221 7 H 0.077 0.923 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.140 3.860 15 C -0.092 4.092 16 H 0.072 0.928 17 C -0.116 4.116 18 C 0.116 3.884 19 N -0.722 5.722 20 C 0.531 3.469 21 O -0.533 6.533 22 C -0.105 4.105 23 C -0.140 4.140 24 C -0.140 4.140 25 C 0.257 3.743 26 F -0.188 7.188 27 F -0.176 7.176 28 C -0.148 4.148 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.105 0.895 33 H 0.011 0.989 34 H 0.251 0.749 35 H 0.022 0.978 36 H 0.019 0.981 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.400 0.600 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.100 0.900 46 H 0.126 0.874 47 H 0.117 0.883 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 8.077 23.180 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.086 0.914 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.349 4.349 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.014 3.986 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.154 4.154 18 C -0.007 4.007 19 N -0.373 5.373 20 C 0.315 3.685 21 O -0.409 6.409 22 C -0.108 4.108 23 C -0.197 4.197 24 C -0.178 4.178 25 C 0.220 3.780 26 F -0.168 7.168 27 F -0.157 7.157 28 C -0.186 4.186 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.029 0.971 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.235 0.765 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.118 0.882 46 H 0.145 0.855 47 H 0.135 0.865 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.904 7.205 23.019 24.434 hybrid contribution 0.580 0.200 -0.445 0.758 sum -3.324 7.406 22.574 23.989 Atomic orbital electron populations 1.21628 0.95744 1.01345 1.00347 1.22667 0.94359 0.99330 0.97122 0.91408 1.22008 0.84106 0.95813 0.94695 1.44500 1.10668 1.78789 0.99164 1.19085 0.91140 1.37434 0.87266 0.90562 1.24782 0.97305 1.02083 0.96613 1.69803 1.22549 1.53902 1.10907 0.86083 0.81265 0.77862 0.80369 1.21647 1.21668 1.20721 1.21362 0.93668 0.97197 0.86393 1.22139 0.98139 0.97619 0.93298 0.90926 1.21788 1.01225 0.98588 0.93821 1.21556 1.02299 0.93329 0.83492 1.46060 1.67868 1.13115 1.10264 1.19872 0.76895 0.87996 0.83689 1.90736 1.49550 1.16158 1.84465 1.21908 0.97790 0.97569 0.93547 1.21790 1.00446 0.94105 1.03330 1.24080 1.00653 1.01846 0.91193 1.21935 0.93167 0.79595 0.83267 1.93029 1.81456 1.77556 1.64793 1.93002 1.86603 1.45649 1.90468 1.24162 0.97015 1.06182 0.91230 0.93854 0.92885 0.93011 0.87764 0.97097 0.93788 0.96044 0.96313 0.91606 0.91184 0.90799 0.91390 0.76544 0.90805 0.91135 0.90209 0.88152 0.85546 0.86466 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.31 37.16 0.35 -1.62 16 2 C -0.12 -2.05 3.10 -88.36 -0.27 -2.32 16 3 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 4 C 0.16 3.79 5.37 -2.41 -0.01 3.78 16 5 N -0.61 -15.51 3.40 -169.94 -0.58 -16.08 16 6 C -0.22 -6.19 10.27 -15.06 -0.15 -6.35 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 9 N -0.92 -26.90 10.09 55.49 0.56 -26.34 16 10 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.14 2.86 6.11 -3.06 -0.02 2.85 16 15 C -0.09 -1.49 2.42 -88.79 -0.21 -1.71 16 16 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 17 C -0.12 -1.38 4.72 -26.73 -0.13 -1.51 16 18 C 0.12 1.37 5.54 -4.04 -0.02 1.35 16 19 N -0.72 -6.78 5.44 -60.30 -0.33 -7.11 16 20 C 0.53 5.64 6.94 -10.99 -0.08 5.56 16 21 O -0.53 -7.87 15.90 5.55 0.09 -7.79 16 22 C -0.10 -0.78 1.26 -154.76 -0.19 -0.97 16 23 C -0.14 -0.81 8.95 37.16 0.33 -0.48 16 24 C -0.14 -1.09 6.78 -25.92 -0.18 -1.27 16 25 C 0.26 2.01 3.26 -25.92 -0.08 1.93 16 26 F -0.19 -1.80 17.41 2.25 0.04 -1.76 16 27 F -0.18 -1.48 15.54 2.25 0.03 -1.44 16 28 C -0.15 -0.93 7.00 -25.82 -0.18 -1.11 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.78 8.08 -51.94 -0.42 0.36 16 32 H 0.10 2.82 5.87 -51.93 -0.31 2.52 16 33 H 0.01 0.28 7.99 -51.93 -0.41 -0.13 16 34 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 35 H 0.02 0.44 7.73 -51.93 -0.40 0.04 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.07 0.85 8.00 -51.93 -0.42 0.43 16 39 H 0.07 1.03 7.58 -51.93 -0.39 0.63 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.40 2.65 7.36 -40.82 -0.30 2.35 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.33 7.00 -51.93 -0.36 -0.04 16 44 H 0.08 0.43 6.22 -51.93 -0.32 0.11 16 45 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 46 H 0.13 1.12 7.44 -51.93 -0.39 0.73 16 47 H 0.12 0.74 8.10 -51.93 -0.42 0.32 16 48 H 0.10 0.47 8.10 -51.93 -0.42 0.05 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -32.47 383.80 -8.28 -40.75 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.90 Total: -0.83 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.95 Total: -2.33 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.35 Total: -49.52 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.09 Total: -7.79 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.07 Total: -3.20 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.47 -8.28 -40.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103634355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.377 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds