Wall clock time and date at job start Tue Mar 31 2020 17:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.91676 * 2 1 4 4 C 1.55126 * 111.16516 * 236.07383 * 2 1 3 5 5 N 1.47423 * 104.94358 * 205.13160 * 4 2 1 6 6 C 1.36939 * 125.64794 * 203.96209 * 5 4 2 7 7 H 1.07995 * 119.99482 * 180.02562 * 6 5 4 8 8 C 1.38806 * 119.99836 * 0.04382 * 6 5 4 9 9 N 1.31614 * 120.00098 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99882 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47079 * 89.99947 * 10 8 6 12 12 H 1.48498 * 109.47069 * 210.00117 * 10 8 6 13 13 H 1.48505 * 109.46807 * 329.99975 * 10 8 6 14 14 C 1.47024 * 108.70150 * 24.00311 * 5 4 2 15 15 C 1.54322 * 107.27413 * 358.93733 * 14 5 4 16 16 H 1.08998 * 110.71904 * 96.34638 * 15 14 5 17 17 C 1.52996 * 110.71970 * 219.44782 * 15 14 5 18 18 C 1.53001 * 109.47105 * 291.15358 * 17 15 14 19 19 N 1.46499 * 109.47059 * 180.02562 * 18 17 15 20 20 C 1.34780 * 120.00178 * 180.02562 * 19 18 17 21 21 O 1.21285 * 119.99352 * 359.97438 * 20 19 18 22 22 C 1.50691 * 120.00341 * 179.97438 * 20 19 18 23 23 C 1.52996 * 112.85068 * 311.19709 * 22 20 19 24 24 C 1.53782 * 113.61657 * 179.97438 * 22 20 19 25 25 C 1.53781 * 87.08260 * 219.93614 * 24 22 20 26 26 F 1.39905 * 113.61459 * 139.98223 * 25 24 22 27 27 F 1.39901 * 113.61682 * 270.79882 * 25 24 22 28 28 C 1.53780 * 87.17569 * 25.39011 * 25 24 22 29 29 H 1.08998 * 109.47011 * 296.10310 * 1 2 3 30 30 H 1.09005 * 109.46853 * 56.09756 * 1 2 3 31 31 H 1.08989 * 109.47117 * 176.09685 * 1 2 3 32 32 H 1.08991 * 110.41921 * 86.20307 * 4 2 1 33 33 H 1.09001 * 110.19996 * 323.94834 * 4 2 1 34 34 H 0.97006 * 119.99909 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.87776 * 239.52212 * 14 5 4 36 36 H 1.09000 * 110.01263 * 118.43436 * 14 5 4 37 37 H 1.09009 * 109.47008 * 171.15910 * 17 15 14 38 38 H 1.08995 * 109.47585 * 51.16032 * 17 15 14 39 39 H 1.08994 * 109.47102 * 60.00625 * 18 17 15 40 40 H 1.08995 * 109.47450 * 300.00757 * 18 17 15 41 41 H 0.96997 * 120.00239 * 0.02562 * 19 18 17 42 42 H 1.08993 * 109.47285 * 288.79845 * 23 22 20 43 43 H 1.08999 * 109.47324 * 48.80170 * 23 22 20 44 44 H 1.09006 * 109.47299 * 168.80192 * 23 22 20 45 45 H 1.09001 * 113.61250 * 105.38431 * 24 22 20 46 46 H 1.09002 * 113.68969 * 334.49378 * 24 22 20 47 47 H 1.09000 * 113.61461 * 89.15487 * 28 25 24 48 48 H 1.08995 * 113.61894 * 220.06224 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0901 -0.8074 -1.2003 5 7 3.4299 -1.2473 -0.7705 6 6 4.4675 -1.5741 -1.6022 7 1 5.4142 -1.8868 -1.1872 8 6 4.3025 -1.5031 -2.9786 9 7 3.1487 -1.1222 -3.4843 10 14 5.7183 -1.9482 -4.1132 11 1 5.6612 -3.3978 -4.4307 12 1 5.6126 -1.1620 -5.3685 13 1 7.0064 -1.6387 -3.4421 14 6 3.4671 -1.2781 0.6989 15 6 2.0861 -0.8079 1.2022 16 1 1.4450 -1.6613 1.4229 17 6 2.2350 0.0876 2.4338 18 6 2.7237 -0.7499 3.6173 19 7 2.8656 0.1075 4.7967 20 6 3.2868 -0.4172 5.9645 21 8 3.5479 -1.5992 6.0390 22 6 3.4334 0.4648 7.1775 23 6 4.2134 1.7488 6.8878 24 6 3.9221 -0.2843 8.4285 25 6 2.9244 0.5668 9.2317 26 9 2.2591 -0.1467 10.2345 27 9 3.4600 1.7755 9.6892 28 6 2.1133 0.7051 7.9325 29 1 -0.3633 0.4522 0.9228 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3633 -1.0252 -0.0699 32 1 2.1643 -0.1733 -2.0837 33 1 1.4547 -1.6695 -1.4033 34 1 3.0333 -1.0730 -4.4463 35 1 4.2434 -0.6057 1.0641 36 1 3.6625 -2.2927 1.0460 37 1 1.2705 0.5333 2.6777 38 1 2.9572 0.8767 2.2242 39 1 3.6880 -1.1954 3.3735 40 1 2.0015 -1.5389 3.8269 41 1 2.6565 1.0528 4.7371 42 1 5.2649 1.5078 6.7321 43 1 3.8128 2.2229 5.9918 44 1 4.1182 2.4304 7.7331 45 1 4.9646 -0.0856 8.6769 46 1 3.6835 -1.3478 8.4232 47 1 1.3785 -0.0873 7.7901 48 1 1.6977 1.7013 7.7811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103634355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:31 Heat of formation + Delta-G solvation = -124.822203 kcal Electronic energy + Delta-G solvation = -28633.424403 eV Core-core repulsion = 24359.043499 eV Total energy + Delta-G solvation = -4274.380904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -49.89848 -48.22607 -41.47655 -39.79878 -38.39846 -36.47080 -35.02336 -32.58278 -32.50358 -30.33384 -28.46016 -27.49079 -27.29293 -25.99266 -24.99836 -23.48165 -22.31610 -21.40760 -20.79794 -20.02089 -19.07944 -18.86839 -17.82666 -17.55464 -17.23902 -16.91552 -16.69272 -16.48365 -16.01210 -15.59103 -15.24735 -15.14988 -14.94272 -14.76596 -14.59399 -14.54499 -14.34799 -14.16815 -13.70220 -13.52532 -13.38436 -13.33029 -13.22943 -12.90835 -12.85981 -12.76867 -12.72721 -12.39744 -12.26207 -12.18567 -12.02150 -11.94372 -11.76806 -11.48012 -11.41373 -11.25160 -11.07654 -10.78264 -10.70536 -10.10915 -8.87213 -7.77390 -5.21877 1.44723 1.46613 1.48734 1.55358 2.05570 2.43414 2.48790 2.72509 3.12018 3.14448 3.30956 3.37458 3.72368 3.74463 3.82612 3.94351 4.02915 4.08056 4.24441 4.33439 4.37043 4.42919 4.53073 4.59388 4.63792 4.64474 4.75480 4.81120 4.84121 4.85416 4.87633 4.97497 5.03076 5.05413 5.14056 5.21677 5.25852 5.30476 5.41470 5.44024 5.46928 5.56596 5.77873 5.86557 6.33003 6.52437 7.11933 7.20080 7.80115 8.43785 9.23741 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.002113 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.059826 B =13246.943778 C =13879.682832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.073 0.927 4 C 0.158 3.842 5 N -0.630 5.630 6 C -0.240 4.240 7 H 0.076 0.924 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.979 3.021 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.270 1.270 14 C 0.134 3.866 15 C -0.079 4.079 16 H 0.076 0.924 17 C -0.100 4.100 18 C 0.123 3.877 19 N -0.708 5.708 20 C 0.529 3.471 21 O -0.580 6.580 22 C -0.097 4.097 23 C -0.138 4.138 24 C -0.146 4.146 25 C 0.254 3.746 26 F -0.200 7.200 27 F -0.178 7.178 28 C -0.136 4.136 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.068 0.932 33 H -0.019 1.019 34 H 0.247 0.753 35 H 0.026 0.974 36 H 0.009 0.991 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.418 0.582 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.112 0.888 47 H 0.117 0.883 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 10.059 24.733 27.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.091 0.909 4 C 0.033 3.967 5 N -0.356 5.356 6 C -0.369 4.369 7 H 0.094 0.906 8 C -0.260 4.260 9 N -0.598 5.598 10 Si 0.807 3.193 11 H -0.215 1.215 12 H -0.217 1.217 13 H -0.195 1.195 14 C 0.009 3.991 15 C -0.098 4.098 16 H 0.095 0.905 17 C -0.138 4.138 18 C -0.001 4.001 19 N -0.360 5.360 20 C 0.316 3.684 21 O -0.460 6.460 22 C -0.100 4.100 23 C -0.195 4.195 24 C -0.184 4.184 25 C 0.217 3.783 26 F -0.181 7.181 27 F -0.159 7.159 28 C -0.174 4.174 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.086 0.914 33 H -0.001 1.001 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.027 0.973 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.255 0.745 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.125 0.875 46 H 0.130 0.870 47 H 0.136 0.864 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.561 9.227 24.602 26.669 hybrid contribution 0.822 -0.472 -0.910 1.314 sum -3.740 8.755 23.693 25.534 Atomic orbital electron populations 1.21592 0.92945 1.01461 1.02415 1.22504 0.96507 0.98436 0.94530 0.90895 1.21837 0.83583 0.94773 0.96459 1.44858 1.10671 1.78789 1.01265 1.19440 0.92017 1.37267 0.88198 0.90608 1.25623 0.99817 1.02533 0.98050 1.70070 1.24225 1.54792 1.10673 0.85073 0.78794 0.77259 0.78183 1.21547 1.21665 1.19488 1.21572 0.96789 0.96923 0.83839 1.22048 0.95049 0.98283 0.94445 0.90546 1.21636 1.03286 0.97492 0.91373 1.21302 1.00804 0.93605 0.84405 1.45872 1.67141 1.13761 1.09180 1.20395 0.75787 0.87681 0.84555 1.90723 1.51594 1.18410 1.85260 1.21873 0.98948 0.97515 0.91658 1.21832 0.99974 0.93180 1.04511 1.24103 1.01290 1.01220 0.91830 1.22043 0.93500 0.79357 0.83358 1.93005 1.81696 1.77941 1.65430 1.92998 1.86705 1.45624 1.90562 1.24162 0.96246 1.07758 0.89226 0.89881 0.92982 0.93638 0.91377 1.00134 0.94352 0.95590 0.97311 0.88153 0.90658 0.93386 0.91884 0.74456 0.91286 0.89393 0.89367 0.87462 0.87009 0.86425 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.31 71.98 0.67 -2.73 16 2 C -0.10 -3.42 3.10 -9.33 -0.03 -3.45 16 3 H 0.07 2.44 8.05 -2.38 -0.02 2.42 16 4 C 0.16 7.79 5.37 86.93 0.47 8.25 16 5 N -0.63 -33.07 3.40 -691.58 -2.35 -35.42 16 6 C -0.24 -13.81 10.27 84.03 0.86 -12.95 16 7 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 8 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 9 N -0.95 -57.12 10.09 21.65 0.22 -56.90 16 10 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 C 0.13 5.50 6.11 86.73 0.53 6.03 16 15 C -0.08 -2.41 2.42 -9.61 -0.02 -2.43 16 16 H 0.08 2.30 8.04 -2.39 -0.02 2.29 16 17 C -0.10 -2.03 4.72 30.59 0.14 -1.89 16 18 C 0.12 2.64 5.54 86.38 0.48 3.12 16 19 N -0.71 -11.30 5.44 -463.07 -2.52 -13.82 16 20 C 0.53 10.38 6.94 87.65 0.61 10.99 16 21 O -0.58 -17.05 15.90 -3.04 -0.05 -17.10 16 22 C -0.10 -1.23 1.26 -52.34 -0.07 -1.29 16 23 C -0.14 -1.19 8.95 71.98 0.64 -0.54 16 24 C -0.15 -2.15 6.78 31.12 0.21 -1.94 16 25 C 0.25 3.55 3.26 31.12 0.10 3.65 16 26 F -0.20 -3.64 17.41 44.97 0.78 -2.85 16 27 F -0.18 -2.60 15.54 44.97 0.70 -1.90 16 28 C -0.14 -1.33 7.00 31.18 0.22 -1.11 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.04 1.28 8.08 -2.39 -0.02 1.26 16 32 H 0.07 3.84 5.87 -2.39 -0.01 3.83 16 33 H -0.02 -1.04 7.99 -2.39 -0.02 -1.06 16 34 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 35 H 0.03 1.05 7.73 -2.39 -0.02 1.03 16 36 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.07 1.52 8.00 -2.39 -0.02 1.51 16 39 H 0.05 1.30 7.58 -2.39 -0.02 1.28 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.42 3.76 7.36 -92.71 -0.68 3.07 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.09 0.45 7.00 -2.39 -0.02 0.44 16 44 H 0.09 0.66 6.22 -2.38 -0.01 0.64 16 45 H 0.11 1.38 8.10 -2.39 -0.02 1.36 16 46 H 0.11 2.01 7.44 -2.39 -0.02 1.99 16 47 H 0.12 1.20 8.10 -2.39 -0.02 1.18 16 48 H 0.13 0.61 8.10 -2.39 -0.02 0.59 16 Total: -1.00 -74.39 383.80 4.37 -70.02 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.27 Total: 9.35 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 5.28 Total: 0.25 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -4.65 Total: -106.14 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.05 Total: -17.10 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 1.48 Total: -4.75 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -74.39 4.37 -70.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103634355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.803 kcal (2) G-P(sol) polarization free energy of solvation -74.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds