Wall clock time and date at job start Tue Mar 31 2020 17:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.37137 * 2 1 4 4 C 1.54005 * 110.32503 * 237.81303 * 2 1 3 5 5 N 1.47485 * 107.24392 * 242.31631 * 4 2 1 6 6 C 1.34777 * 127.02912 * 154.61510 * 5 4 2 7 7 O 1.21282 * 119.99748 * 180.02562 * 6 5 4 8 8 C 1.50705 * 120.00262 * 0.02562 * 6 5 4 9 9 H 1.08993 * 110.01388 * 58.61125 * 8 6 5 10 10 C 1.54262 * 110.02969 * 297.16858 * 8 6 5 11 11 C 1.54891 * 104.19483 * 217.10427 * 10 8 6 12 12 C 1.54893 * 102.74816 * 37.94405 * 11 10 8 13 13 F 1.39897 * 110.48456 * 203.37841 * 12 11 10 14 14 F 1.39893 * 110.59578 * 80.79441 * 12 11 10 15 15 C 1.53881 * 110.02960 * 180.02562 * 8 6 5 16 16 C 1.48377 * 105.79701 * 334.78511 * 5 4 2 17 17 C 1.54616 * 110.32548 * 122.19255 * 2 1 3 18 18 H 1.09002 * 110.74101 * 22.40549 * 17 2 1 19 19 C 1.52999 * 110.73839 * 259.07674 * 17 2 1 20 20 C 1.53008 * 109.47071 * 175.00051 * 19 17 2 21 21 N 1.46500 * 109.47031 * 180.02562 * 20 19 17 22 22 C 1.36935 * 119.99974 * 180.02562 * 21 20 19 23 23 H 1.08003 * 119.99593 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00224 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99468 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99992 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47005 * 90.00111 * 26 24 22 28 28 H 1.48499 * 109.46796 * 209.99590 * 26 24 22 29 29 H 1.48500 * 109.47026 * 329.99728 * 26 24 22 30 30 H 1.09002 * 109.47188 * 180.73064 * 1 2 3 31 31 H 1.08995 * 109.47348 * 300.73257 * 1 2 3 32 32 H 1.09002 * 109.47358 * 60.73265 * 1 2 3 33 33 H 1.09002 * 109.91501 * 1.77607 * 4 2 1 34 34 H 1.08999 * 109.90987 * 122.86218 * 4 2 1 35 35 H 1.08999 * 110.49335 * 335.78072 * 10 8 6 36 36 H 1.08999 * 110.48629 * 98.43110 * 10 8 6 37 37 H 1.09004 * 110.75509 * 279.63137 * 11 10 8 38 38 H 1.09000 * 110.91529 * 156.33446 * 11 10 8 39 39 H 1.09000 * 110.03059 * 238.56653 * 15 8 6 40 40 H 1.08997 * 110.03134 * 359.95206 * 15 8 6 41 41 H 1.09005 * 110.51886 * 280.62106 * 16 5 4 42 42 H 1.09006 * 110.83140 * 157.65823 * 16 5 4 43 43 H 1.08993 * 109.47040 * 294.99926 * 19 17 2 44 44 H 1.08996 * 109.46892 * 55.00553 * 19 17 2 45 45 H 1.08999 * 109.46707 * 300.00043 * 20 19 17 46 46 H 1.09003 * 109.46641 * 59.99834 * 20 19 17 47 47 H 0.97000 * 120.00131 * 0.02562 * 21 20 19 48 48 H 0.97003 * 119.99539 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0649 -0.7693 -1.2222 5 7 2.8305 -1.9222 -0.7124 6 6 3.0656 -3.0862 -1.3498 7 8 3.7157 -3.9543 -0.8069 8 6 2.5209 -3.3091 -2.7372 9 1 2.8992 -2.5431 -3.4140 10 6 0.9788 -3.2775 -2.7107 11 6 0.5591 -4.3605 -3.7354 12 6 1.6118 -5.4735 -3.5070 13 9 1.7338 -6.2737 -4.6481 14 9 1.2699 -6.2540 -2.3975 15 6 2.9229 -4.7056 -3.2432 16 6 3.2835 -1.5370 0.6470 17 6 2.0671 -0.7725 1.2270 18 1 1.3174 -1.4685 1.6033 19 6 2.5095 0.1960 2.3257 20 6 2.9177 -0.5960 3.5696 21 7 3.3407 0.3314 4.6219 22 6 3.7534 -0.1517 5.8349 23 1 3.7665 -1.2164 6.0160 24 6 4.1538 0.7270 6.8322 25 7 4.1372 2.0244 6.6116 26 14 4.7174 0.0679 8.4867 27 1 6.1829 -0.1693 8.4518 28 1 4.4013 1.0578 9.5475 29 1 4.0160 -1.2087 8.7759 30 1 -0.3634 -1.0276 0.0131 31 1 -0.3634 0.5251 0.8833 32 1 -0.3634 0.5024 -0.8965 33 1 1.2333 -1.1174 -1.8349 34 1 2.7153 -0.1233 -1.8119 35 1 0.6090 -3.5292 -1.7167 36 1 0.6120 -2.2984 -3.0187 37 1 0.6202 -3.9740 -4.7528 38 1 -0.4447 -4.7287 -3.5233 39 1 3.4959 -4.6176 -4.1662 40 1 3.5127 -5.2217 -2.4856 41 1 4.1554 -0.8853 0.5888 42 1 3.5044 -2.4200 1.2467 43 1 3.3583 0.7819 1.9734 44 1 1.6851 0.8641 2.5747 45 1 2.0688 -1.1819 3.9219 46 1 3.7421 -1.2641 3.3205 47 1 3.3285 1.2876 4.4594 48 1 4.4166 2.6385 7.3086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104271968.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:22 Heat of formation + Delta-G solvation = -141.639261 kcal Electronic energy + Delta-G solvation = -28970.555556 eV Core-core repulsion = 24695.445410 eV Total energy + Delta-G solvation = -4275.110146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.17170 -47.29523 -40.66994 -38.61255 -36.84481 -35.17220 -33.30573 -32.09442 -30.42039 -29.81019 -28.83918 -26.81905 -26.65106 -24.36979 -22.81473 -21.92711 -21.62618 -20.73042 -20.10393 -19.27788 -18.21841 -17.43385 -17.15128 -16.92907 -16.27204 -16.00970 -15.77130 -14.90214 -14.81948 -14.59494 -14.47396 -14.09796 -13.90274 -13.66387 -13.61084 -13.39147 -13.29545 -13.20964 -13.11040 -12.69066 -12.58892 -12.38783 -12.21515 -12.06235 -11.90056 -11.68480 -11.40902 -11.40239 -11.24303 -11.05902 -10.94173 -10.81927 -10.61214 -10.47309 -10.29561 -10.00435 -9.95211 -9.65816 -8.85643 -8.85029 -6.90640 -5.75401 -3.03758 2.37545 2.66602 3.32626 3.45227 3.48517 3.50350 3.52017 3.62381 3.95395 4.24718 4.33175 4.41728 4.55337 4.60016 4.64699 4.66456 4.69430 4.76549 4.89198 4.98120 5.13938 5.17260 5.23166 5.30694 5.32236 5.42797 5.46417 5.51213 5.53069 5.58913 5.62552 5.69991 5.74493 5.84614 5.86536 5.96653 6.03148 6.13171 6.26575 6.36798 6.41336 6.84823 6.88487 7.35168 7.72161 7.93059 8.44016 9.55001 10.13129 10.47589 11.47660 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.020388 B = 0.002256 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.004129 B =12409.672465 C =13190.710103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.089 0.911 4 C 0.097 3.903 5 N -0.618 5.618 6 C 0.535 3.465 7 O -0.533 6.533 8 C -0.106 4.106 9 H 0.111 0.889 10 C -0.115 4.115 11 C -0.157 4.157 12 C 0.279 3.721 13 F -0.198 7.198 14 F -0.190 7.190 15 C -0.158 4.158 16 C 0.108 3.892 17 C -0.090 4.090 18 H 0.084 0.916 19 C -0.114 4.114 20 C 0.151 3.849 21 N -0.734 5.734 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.016 4.016 25 N -0.935 5.935 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.017 0.983 46 H 0.019 0.981 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 -7.182 -27.402 29.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.026 4.026 5 N -0.352 5.352 6 C 0.323 3.677 7 O -0.410 6.410 8 C -0.128 4.128 9 H 0.129 0.871 10 C -0.153 4.153 11 C -0.195 4.195 12 C 0.242 3.758 13 F -0.179 7.179 14 F -0.171 7.171 15 C -0.196 4.196 16 C -0.014 4.014 17 C -0.110 4.110 18 H 0.102 0.898 19 C -0.153 4.153 20 C 0.024 3.976 21 N -0.378 5.378 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.584 5.584 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.035 0.965 46 H 0.037 0.963 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.933 -7.905 -27.027 29.543 hybrid contribution 0.342 -0.057 0.879 0.945 sum -8.591 -7.963 -26.148 28.652 Atomic orbital electron populations 1.21845 0.94046 1.01957 1.02180 1.22163 0.96454 0.99851 0.93771 0.89268 1.22401 0.95658 0.87455 0.97107 1.48802 1.53471 1.14676 1.18208 1.19943 0.80052 0.80400 0.87261 1.90723 1.40369 1.42330 1.67579 1.21797 0.97177 0.98691 0.95109 0.87144 1.22422 0.92732 0.99745 1.00406 1.23469 0.99197 0.94633 1.02165 1.21872 0.97355 0.84012 0.72521 1.93003 1.96941 1.76845 1.51115 1.93044 1.93460 1.77265 1.53345 1.23137 0.96140 0.94947 1.05403 1.22721 0.96989 0.99984 0.81668 1.22343 0.96910 0.97316 0.94464 0.89787 1.21722 1.01294 0.97629 0.94620 1.20678 0.96412 0.92814 0.87703 1.42363 1.79131 1.05137 1.11190 1.19247 1.35612 0.92153 0.89907 0.91205 1.24743 1.02497 0.95333 0.98558 1.69661 1.54367 1.00702 1.33658 0.86183 0.78516 0.77626 0.83861 1.21703 1.21771 1.20748 0.92608 0.91759 0.92607 0.90361 0.91422 0.89782 0.88887 0.87872 0.88579 0.88007 0.86430 0.90529 0.89444 0.91621 0.91364 0.96487 0.96348 0.78346 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.89 37.16 0.33 -0.72 16 2 C -0.10 -0.87 3.17 -89.25 -0.28 -1.16 16 3 H 0.09 0.74 7.85 -51.93 -0.41 0.33 16 4 C 0.10 0.71 6.33 -2.98 -0.02 0.69 16 5 N -0.62 -6.52 3.30 -169.54 -0.56 -7.08 16 6 C 0.54 6.21 7.09 -10.98 -0.08 6.13 16 7 O -0.53 -8.52 15.44 5.56 0.09 -8.43 16 8 C -0.11 -0.79 2.82 -90.65 -0.26 -1.04 16 9 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 10 C -0.12 -0.66 5.08 -25.07 -0.13 -0.78 16 11 C -0.16 -0.87 6.49 -24.74 -0.16 -1.03 16 12 C 0.28 2.46 2.49 -25.10 -0.06 2.39 16 13 F -0.20 -1.93 17.16 2.25 0.04 -1.89 16 14 F -0.19 -2.24 17.17 2.25 0.04 -2.20 16 15 C -0.16 -1.33 6.01 -25.64 -0.15 -1.48 16 16 C 0.11 1.35 5.94 -1.98 -0.01 1.33 16 17 C -0.09 -1.05 2.59 -88.75 -0.23 -1.28 16 18 H 0.08 1.02 7.86 -51.93 -0.41 0.62 16 19 C -0.11 -1.69 4.70 -26.73 -0.13 -1.81 16 20 C 0.15 3.01 6.15 -4.04 -0.02 2.98 16 21 N -0.73 -18.75 5.60 -59.90 -0.34 -19.08 16 22 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 23 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 24 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 25 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 26 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.41 4.63 -51.93 -0.24 0.17 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.62 7.85 -51.93 -0.41 0.21 16 36 H 0.09 0.30 6.63 -51.93 -0.34 -0.04 16 37 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.64 8.11 -51.93 -0.42 0.22 16 40 H 0.12 1.32 6.37 -51.93 -0.33 0.99 16 41 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 42 H 0.09 1.28 7.85 -51.93 -0.41 0.87 16 43 H 0.07 0.97 7.99 -51.93 -0.42 0.56 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.38 7.66 -51.93 -0.40 -0.02 16 47 H 0.38 10.17 7.67 -40.82 -0.31 9.85 16 48 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 383.67 15.07 5.78 5.78 Total: -1.00 -34.25 383.67 -8.55 -42.80 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.86 Total: 3.40 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.45 Total: -3.25 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.17 Total: -53.92 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.08 Total: -4.09 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.25 -8.55 -42.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104271968.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.839 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds