Wall clock time and date at job start Tue Mar 31 2020 17:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.37137 * 2 1 4 4 C 1.54005 * 110.32503 * 237.81303 * 2 1 3 5 5 N 1.47485 * 107.24392 * 242.31631 * 4 2 1 6 6 C 1.34777 * 127.02912 * 154.61510 * 5 4 2 7 7 O 1.21282 * 119.99748 * 180.02562 * 6 5 4 8 8 C 1.50705 * 120.00262 * 0.02562 * 6 5 4 9 9 H 1.08993 * 110.01388 * 58.61125 * 8 6 5 10 10 C 1.54262 * 110.02969 * 297.16858 * 8 6 5 11 11 C 1.54891 * 104.19483 * 217.10427 * 10 8 6 12 12 C 1.54893 * 102.74816 * 37.94405 * 11 10 8 13 13 F 1.39897 * 110.48456 * 203.37841 * 12 11 10 14 14 F 1.39893 * 110.59578 * 80.79441 * 12 11 10 15 15 C 1.53881 * 110.02960 * 180.02562 * 8 6 5 16 16 C 1.48377 * 105.79701 * 334.78511 * 5 4 2 17 17 C 1.54616 * 110.32548 * 122.19255 * 2 1 3 18 18 H 1.09002 * 110.74101 * 22.40549 * 17 2 1 19 19 C 1.52999 * 110.73839 * 259.07674 * 17 2 1 20 20 C 1.53008 * 109.47071 * 175.00051 * 19 17 2 21 21 N 1.46500 * 109.47031 * 180.02562 * 20 19 17 22 22 C 1.36935 * 119.99974 * 180.02562 * 21 20 19 23 23 H 1.08003 * 119.99593 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00224 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99468 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99992 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47005 * 90.00111 * 26 24 22 28 28 H 1.48499 * 109.46796 * 209.99590 * 26 24 22 29 29 H 1.48500 * 109.47026 * 329.99728 * 26 24 22 30 30 H 1.09002 * 109.47188 * 180.73064 * 1 2 3 31 31 H 1.08995 * 109.47348 * 300.73257 * 1 2 3 32 32 H 1.09002 * 109.47358 * 60.73265 * 1 2 3 33 33 H 1.09002 * 109.91501 * 1.77607 * 4 2 1 34 34 H 1.08999 * 109.90987 * 122.86218 * 4 2 1 35 35 H 1.08999 * 110.49335 * 335.78072 * 10 8 6 36 36 H 1.08999 * 110.48629 * 98.43110 * 10 8 6 37 37 H 1.09004 * 110.75509 * 279.63137 * 11 10 8 38 38 H 1.09000 * 110.91529 * 156.33446 * 11 10 8 39 39 H 1.09000 * 110.03059 * 238.56653 * 15 8 6 40 40 H 1.08997 * 110.03134 * 359.95206 * 15 8 6 41 41 H 1.09005 * 110.51886 * 280.62106 * 16 5 4 42 42 H 1.09006 * 110.83140 * 157.65823 * 16 5 4 43 43 H 1.08993 * 109.47040 * 294.99926 * 19 17 2 44 44 H 1.08996 * 109.46892 * 55.00553 * 19 17 2 45 45 H 1.08999 * 109.46707 * 300.00043 * 20 19 17 46 46 H 1.09003 * 109.46641 * 59.99834 * 20 19 17 47 47 H 0.97000 * 120.00131 * 0.02562 * 21 20 19 48 48 H 0.97003 * 119.99539 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0649 -0.7693 -1.2222 5 7 2.8305 -1.9222 -0.7124 6 6 3.0656 -3.0862 -1.3498 7 8 3.7157 -3.9543 -0.8069 8 6 2.5209 -3.3091 -2.7372 9 1 2.8992 -2.5431 -3.4140 10 6 0.9788 -3.2775 -2.7107 11 6 0.5591 -4.3605 -3.7354 12 6 1.6118 -5.4735 -3.5070 13 9 1.7338 -6.2737 -4.6481 14 9 1.2699 -6.2540 -2.3975 15 6 2.9229 -4.7056 -3.2432 16 6 3.2835 -1.5370 0.6470 17 6 2.0671 -0.7725 1.2270 18 1 1.3174 -1.4685 1.6033 19 6 2.5095 0.1960 2.3257 20 6 2.9177 -0.5960 3.5696 21 7 3.3407 0.3314 4.6219 22 6 3.7534 -0.1517 5.8349 23 1 3.7665 -1.2164 6.0160 24 6 4.1538 0.7270 6.8322 25 7 4.1372 2.0244 6.6116 26 14 4.7174 0.0679 8.4867 27 1 6.1829 -0.1693 8.4518 28 1 4.4013 1.0578 9.5475 29 1 4.0160 -1.2087 8.7759 30 1 -0.3634 -1.0276 0.0131 31 1 -0.3634 0.5251 0.8833 32 1 -0.3634 0.5024 -0.8965 33 1 1.2333 -1.1174 -1.8349 34 1 2.7153 -0.1233 -1.8119 35 1 0.6090 -3.5292 -1.7167 36 1 0.6120 -2.2984 -3.0187 37 1 0.6202 -3.9740 -4.7528 38 1 -0.4447 -4.7287 -3.5233 39 1 3.4959 -4.6176 -4.1662 40 1 3.5127 -5.2217 -2.4856 41 1 4.1554 -0.8853 0.5888 42 1 3.5044 -2.4200 1.2467 43 1 3.3583 0.7819 1.9734 44 1 1.6851 0.8641 2.5747 45 1 2.0688 -1.1819 3.9219 46 1 3.7421 -1.2641 3.3205 47 1 3.3285 1.2876 4.4594 48 1 4.4166 2.6385 7.3086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104271968.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:21 Heat of formation + Delta-G solvation = -162.982262 kcal Electronic energy + Delta-G solvation = -28971.481058 eV Core-core repulsion = 24695.445410 eV Total energy + Delta-G solvation = -4276.035648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -49.90570 -48.05467 -41.50192 -39.48089 -37.55675 -36.89136 -34.61264 -33.41789 -31.86263 -30.45206 -29.69482 -28.05861 -27.28028 -25.91381 -24.24082 -22.82629 -22.26136 -21.88478 -20.98669 -20.04446 -19.19668 -18.89849 -18.13933 -17.72152 -17.09337 -16.83091 -16.67348 -16.60069 -15.93260 -15.58600 -15.34344 -15.12467 -15.11069 -14.80892 -14.63356 -14.39956 -14.36967 -14.19798 -14.01756 -13.59389 -13.28248 -13.24588 -13.12979 -12.89326 -12.82595 -12.70674 -12.63965 -12.45567 -12.35775 -12.26967 -12.13149 -11.94594 -11.90463 -11.61141 -11.55884 -11.43106 -11.23806 -10.94824 -10.87840 -9.71676 -9.02861 -7.98430 -5.27231 1.45011 1.46802 1.53017 1.55383 1.85514 2.53560 2.74637 2.90685 3.03752 3.33835 3.34978 3.50771 3.58763 3.76230 3.81301 3.92322 4.08498 4.09592 4.16286 4.26361 4.28596 4.33150 4.41692 4.47439 4.51393 4.59563 4.68001 4.69587 4.75879 4.79615 4.87634 4.90007 4.91532 4.95446 4.96863 5.07855 5.09835 5.17729 5.23288 5.31511 5.37136 5.43595 5.46921 5.58784 6.24951 6.53865 7.07086 7.30921 8.06766 8.30910 9.24986 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.020388 B = 0.002256 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.004129 B =12409.672465 C =13190.710103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.097 0.903 4 C 0.096 3.904 5 N -0.616 5.616 6 C 0.526 3.474 7 O -0.592 6.592 8 C -0.096 4.096 9 H 0.149 0.851 10 C -0.112 4.112 11 C -0.144 4.144 12 C 0.262 3.738 13 F -0.206 7.206 14 F -0.215 7.215 15 C -0.160 4.160 16 C 0.105 3.895 17 C -0.082 4.082 18 H 0.076 0.924 19 C -0.098 4.098 20 C 0.149 3.851 21 N -0.746 5.746 22 C -0.250 4.250 23 H 0.070 0.930 24 C -0.074 4.074 25 N -0.967 5.967 26 Si 0.973 3.027 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.272 1.272 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.102 0.898 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.013 0.987 46 H 0.012 0.988 47 H 0.376 0.624 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.862 -6.023 -30.028 32.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.115 0.885 4 C -0.025 4.025 5 N -0.348 5.348 6 C 0.316 3.684 7 O -0.473 6.473 8 C -0.117 4.117 9 H 0.167 0.833 10 C -0.149 4.149 11 C -0.181 4.181 12 C 0.226 3.774 13 F -0.187 7.187 14 F -0.197 7.197 15 C -0.198 4.198 16 C -0.017 4.017 17 C -0.102 4.102 18 H 0.094 0.906 19 C -0.137 4.137 20 C 0.023 3.977 21 N -0.389 5.389 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.266 4.266 25 N -0.618 5.618 26 Si 0.802 3.198 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.197 1.197 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.120 0.880 39 H 0.142 0.858 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.031 0.969 46 H 0.030 0.970 47 H 0.208 0.792 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.481 -6.750 -29.689 32.200 hybrid contribution 0.844 -0.483 1.693 1.952 sum -9.637 -7.233 -27.996 30.479 Atomic orbital electron populations 1.21843 0.92782 1.02181 1.03001 1.22155 0.97433 0.99812 0.92154 0.88464 1.22668 0.96702 0.86320 0.96843 1.48879 1.53253 1.15431 1.17222 1.20817 0.79223 0.79696 0.88669 1.90703 1.43047 1.44248 1.69259 1.21884 0.98468 0.98845 0.92520 0.83293 1.22489 0.90959 1.01809 0.99646 1.23513 0.98092 0.92776 1.03761 1.22429 0.99044 0.84353 0.71567 1.92982 1.97095 1.77286 1.51308 1.92992 1.93698 1.78166 1.54812 1.23142 0.95937 0.95386 1.05334 1.22562 0.97538 0.98618 0.83023 1.22189 0.96309 0.96771 0.94950 0.90568 1.21554 1.01342 0.97583 0.93183 1.20847 0.95704 0.92604 0.88566 1.42575 1.79165 1.05514 1.11677 1.19611 1.35066 0.92294 0.91216 0.91236 1.25565 1.03246 0.95668 1.02152 1.69802 1.55583 1.01742 1.34624 0.85151 0.77978 0.77268 0.79440 1.21348 1.21680 1.19702 0.92634 0.93017 0.89828 0.87275 0.89106 0.91798 0.84920 0.84824 0.87957 0.85763 0.90093 0.90761 0.92851 0.91491 0.91048 0.96932 0.97045 0.79221 0.93835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.89 71.98 0.64 -0.93 16 2 C -0.10 -1.34 3.17 -9.90 -0.03 -1.37 16 3 H 0.10 1.27 7.85 -2.39 -0.02 1.25 16 4 C 0.10 1.02 6.33 86.53 0.55 1.57 16 5 N -0.62 -12.18 3.30 -808.70 -2.67 -14.85 16 6 C 0.53 11.95 7.09 87.66 0.62 12.57 16 7 O -0.59 -20.09 15.44 -3.04 -0.05 -20.14 16 8 C -0.10 -1.17 2.82 -10.81 -0.03 -1.20 16 9 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 10 C -0.11 -0.84 5.08 31.67 0.16 -0.68 16 11 C -0.14 -1.10 6.49 31.89 0.21 -0.89 16 12 C 0.26 4.36 2.49 31.65 0.08 4.44 16 13 F -0.21 -3.80 17.16 44.97 0.77 -3.03 16 14 F -0.22 -5.25 17.17 44.97 0.77 -4.48 16 15 C -0.16 -2.55 6.01 31.30 0.19 -2.36 16 16 C 0.11 2.68 5.94 86.68 0.52 3.19 16 17 C -0.08 -1.85 2.59 -9.58 -0.02 -1.88 16 18 H 0.08 1.85 7.86 -2.39 -0.02 1.83 16 19 C -0.10 -2.89 4.70 30.60 0.14 -2.75 16 20 C 0.15 6.09 6.15 86.38 0.53 6.62 16 21 N -0.75 -38.98 5.60 -343.43 -1.92 -40.90 16 22 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 23 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 24 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 25 N -0.97 -59.67 13.06 21.65 0.28 -59.39 16 26 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 27 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 28 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 29 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 30 H 0.05 0.64 8.13 -2.39 -0.02 0.62 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.11 0.51 4.63 -2.39 -0.01 0.50 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.79 7.85 -2.39 -0.02 0.77 16 36 H 0.13 -0.02 6.63 -2.39 -0.02 -0.03 16 37 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.12 1.34 8.11 -2.39 -0.02 1.32 16 40 H 0.08 1.95 6.37 -2.39 -0.02 1.93 16 41 H 0.07 1.90 7.94 -2.38 -0.02 1.88 16 42 H 0.05 1.70 7.85 -2.38 -0.02 1.68 16 43 H 0.07 1.96 7.99 -2.39 -0.02 1.94 16 44 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.01 0.49 7.66 -2.39 -0.02 0.47 16 47 H 0.38 20.40 7.67 -92.71 -0.71 19.69 16 48 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -79.15 383.67 4.32 -74.84 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.25 Total: 19.98 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 4.85 Total: -1.20 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -4.31 Total: -115.14 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.05 Total: -20.14 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 1.54 Total: -7.51 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -79.15 4.32 -74.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104271968.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.144 kcal (2) G-P(sol) polarization free energy of solvation -79.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds