Wall clock time and date at job start Tue Mar 31 2020 17:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 110.65731 * 2 1 4 4 C 1.54595 * 110.99111 * 236.84575 * 2 1 3 5 5 N 1.48119 * 103.42425 * 204.37264 * 4 2 1 6 6 C 1.34771 * 127.03342 * 219.28258 * 5 4 2 7 7 O 1.21282 * 119.99641 * 174.21863 * 6 5 4 8 8 C 1.50695 * 120.00156 * 354.22823 * 6 5 4 9 9 C 1.53002 * 115.56547 * 88.75555 * 8 6 5 10 10 C 1.53000 * 109.46731 * 40.32126 * 9 8 6 11 11 F 1.39903 * 109.47133 * 160.31690 * 9 8 6 12 12 F 1.39902 * 109.47119 * 280.31937 * 9 8 6 13 13 C 1.53003 * 117.49840 * 303.06643 * 8 6 5 14 14 C 1.52997 * 60.00218 * 252.51386 * 13 8 6 15 15 C 1.47484 * 105.92962 * 39.02032 * 5 4 2 16 16 C 1.54005 * 107.08759 * 334.78390 * 15 5 4 17 17 H 1.08996 * 110.33292 * 120.19690 * 16 15 5 18 18 C 1.53002 * 110.32374 * 242.41600 * 16 15 5 19 19 C 1.53005 * 109.46851 * 293.54064 * 18 16 15 20 20 N 1.46498 * 109.46821 * 180.02562 * 19 18 16 21 21 C 1.36945 * 119.99889 * 180.02562 * 20 19 18 22 22 H 1.07995 * 119.99886 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00187 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00132 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99711 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47347 * 89.99994 * 25 23 21 27 27 H 1.48505 * 109.46797 * 209.99956 * 25 23 21 28 28 H 1.48494 * 109.47244 * 329.99549 * 25 23 21 29 29 H 1.08992 * 109.47167 * 296.80906 * 1 2 3 30 30 H 1.09004 * 109.46769 * 56.81032 * 1 2 3 31 31 H 1.09001 * 109.47165 * 176.80684 * 1 2 3 32 32 H 1.08998 * 110.61641 * 85.85503 * 4 2 1 33 33 H 1.09004 * 110.54517 * 322.85341 * 4 2 1 34 34 H 1.08996 * 109.47548 * 56.98419 * 10 9 8 35 35 H 1.09002 * 109.46976 * 176.98549 * 10 9 8 36 36 H 1.09000 * 109.47003 * 296.98061 * 10 9 8 37 37 H 1.08998 * 117.49966 * 145.02022 * 13 8 6 38 38 H 1.09004 * 117.49530 * 359.97438 * 13 8 6 39 39 H 1.09002 * 117.50518 * 107.48735 * 14 13 8 40 40 H 1.09003 * 117.49797 * 252.48890 * 14 13 8 41 41 H 1.09006 * 109.91128 * 94.14012 * 15 5 4 42 42 H 1.09001 * 109.91414 * 215.41713 * 15 5 4 43 43 H 1.08998 * 109.47551 * 53.53774 * 18 16 15 44 44 H 1.08995 * 109.47066 * 173.54464 * 18 16 15 45 45 H 1.08995 * 109.47283 * 300.00008 * 19 18 16 46 46 H 1.08995 * 109.46959 * 60.00335 * 19 18 16 47 47 H 0.96998 * 120.00330 * 0.02562 * 20 19 18 48 48 H 0.97002 * 119.99763 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0200 0.0000 4 6 2.0838 -0.7894 -1.2084 5 7 3.4322 -1.2056 -0.7584 6 6 4.5594 -1.2405 -1.4965 7 8 5.6203 -1.5039 -0.9711 8 6 4.5015 -0.9519 -2.9744 9 6 4.6541 0.5191 -3.3664 10 6 5.7291 1.1705 -2.4941 11 9 5.0287 0.6068 -4.7115 12 9 3.4360 1.1808 -3.1775 13 6 3.5719 -1.8176 -3.8273 14 6 5.0879 -2.0002 -3.9223 15 6 3.2903 -1.5679 0.6641 16 6 2.0775 -0.7916 1.2101 17 1 1.3221 -1.4829 1.5834 18 6 2.5158 0.1678 2.3184 19 6 3.0053 -0.6361 3.5247 20 7 3.4243 0.2825 4.5862 21 6 3.9032 -0.2119 5.7700 22 1 3.9715 -1.2791 5.9213 23 6 4.2998 0.6584 6.7760 24 7 4.7596 0.1832 7.9140 25 14 4.1796 2.5042 6.5152 26 1 2.8486 2.9825 6.9676 27 1 5.2424 3.1850 7.2977 28 1 4.3524 2.8126 5.0729 29 1 -0.3633 0.4635 0.9171 30 1 -0.3633 0.5626 -0.8601 31 1 -0.3633 -1.0261 -0.0572 32 1 2.1525 -0.1479 -2.0869 33 1 1.4612 -1.6601 -1.4143 34 1 6.6649 0.6220 -2.6005 35 1 5.8757 2.2037 -2.8090 36 1 5.4124 1.1499 -1.4513 37 1 3.0689 -1.3390 -4.6676 38 1 3.0025 -2.5960 -3.3194 39 1 5.5157 -2.8983 -3.4768 40 1 5.5824 -1.6420 -4.8253 41 1 3.1179 -2.6401 0.7587 42 1 4.1896 -1.2843 1.2110 43 1 3.3235 0.8015 1.9522 44 1 1.6716 0.7902 2.6150 45 1 2.1976 -1.2697 3.8910 46 1 3.8495 -1.2585 3.2281 47 1 3.3626 1.2410 4.4505 48 1 5.0363 0.7914 8.6172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104688822.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:04 Heat of formation + Delta-G solvation = -99.777188 kcal Electronic energy + Delta-G solvation = -29909.530350 eV Core-core repulsion = 25636.235480 eV Total energy + Delta-G solvation = -4273.294870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.43134 -47.41183 -40.67769 -38.70043 -36.81670 -35.32272 -33.27619 -32.14059 -31.76011 -30.59474 -27.73743 -26.63737 -25.37252 -24.34891 -23.10701 -22.61775 -22.07049 -20.75377 -20.00137 -19.28325 -18.06692 -17.82849 -17.50185 -16.79375 -16.55171 -16.28251 -15.57209 -14.74132 -14.68780 -14.52669 -14.46345 -14.17811 -13.98799 -13.71105 -13.63286 -13.43495 -13.34722 -12.93483 -12.80581 -12.74678 -12.62579 -12.59147 -12.28107 -12.06653 -12.04365 -11.95391 -11.53942 -11.38804 -11.26013 -11.13971 -10.92731 -10.86549 -10.63422 -10.49592 -10.26504 -10.08077 -10.05110 -9.56956 -8.89538 -8.86529 -7.20930 -5.74873 -3.10231 2.14380 2.50999 2.92711 3.26859 3.38724 3.41347 3.46320 3.68515 3.79471 4.01677 4.09447 4.32326 4.43450 4.49908 4.55281 4.60951 4.63753 5.00349 5.01056 5.06532 5.14451 5.16189 5.26718 5.27253 5.32756 5.34779 5.39608 5.47144 5.53540 5.55302 5.60208 5.62350 5.64757 5.77296 5.86551 5.92913 5.94859 6.03525 6.07922 6.17851 6.34653 6.74036 6.78374 7.26878 7.85767 8.01747 8.44335 9.23568 9.96006 10.15782 11.43712 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.002973 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.886546 B = 9416.427622 C = 9806.417355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.084 0.916 4 C 0.096 3.904 5 N -0.611 5.611 6 C 0.573 3.427 7 O -0.521 6.521 8 C -0.216 4.216 9 C 0.337 3.663 10 C -0.192 4.192 11 F -0.192 7.192 12 F -0.192 7.192 13 C -0.147 4.147 14 C -0.123 4.123 15 C 0.106 3.894 16 C -0.091 4.091 17 H 0.090 0.910 18 C -0.121 4.121 19 C 0.155 3.845 20 N -0.757 5.757 21 C -0.244 4.244 22 H 0.090 0.910 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.885 3.115 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 -1.878 -29.481 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.026 4.026 5 N -0.344 5.344 6 C 0.360 3.640 7 O -0.396 6.396 8 C -0.220 4.220 9 C 0.300 3.700 10 C -0.250 4.250 11 F -0.173 7.173 12 F -0.172 7.172 13 C -0.184 4.184 14 C -0.161 4.161 15 C -0.016 4.016 16 C -0.111 4.111 17 H 0.108 0.892 18 C -0.159 4.159 19 C 0.028 3.972 20 N -0.403 5.403 21 C -0.373 4.373 22 H 0.108 0.892 23 C -0.193 4.193 24 N -0.583 5.583 25 Si 0.716 3.284 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.045 0.955 47 H 0.193 0.807 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.130 -2.182 -29.087 29.806 hybrid contribution -0.177 1.462 -0.083 1.475 sum -6.307 -0.720 -29.169 29.852 Atomic orbital electron populations 1.21727 0.93618 1.02099 1.02342 1.22289 0.96257 0.99810 0.93793 0.89731 1.22756 0.82553 0.98874 0.98456 1.48698 1.08292 1.65406 1.12011 1.18471 0.82670 0.77533 0.85369 1.90773 1.28363 1.48360 1.72110 1.22333 1.13363 0.92925 0.93351 1.19961 0.81871 0.89345 0.78812 1.22764 0.98779 1.02623 1.00788 1.93004 1.91455 1.96801 1.36048 1.93000 1.46995 1.82267 1.94984 1.23175 0.93779 1.00748 1.00723 1.23133 0.96131 0.97928 0.98868 1.22319 1.00112 0.99085 0.80097 1.22154 0.96515 0.97452 0.94962 0.89199 1.21850 1.01066 0.97972 0.95037 1.20684 0.96789 0.92608 0.87117 1.42717 1.78931 1.03823 1.14803 1.19076 1.34434 0.94207 0.89632 0.89235 1.24679 1.01108 0.97420 0.96044 1.69704 1.49369 1.33701 1.05540 0.86529 0.77496 0.87171 0.77243 1.21080 1.21705 1.20384 0.91734 0.92462 0.92332 0.89349 0.90822 0.88478 0.89588 0.89171 0.87133 0.87210 0.86976 0.86554 0.91250 0.89289 0.91926 0.91472 0.95542 0.95533 0.80737 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.17 37.16 0.34 -0.70 16 2 C -0.10 -0.94 3.18 -88.93 -0.28 -1.22 16 3 H 0.08 0.86 7.87 -51.93 -0.41 0.45 16 4 C 0.10 0.83 5.74 -2.31 -0.01 0.82 16 5 N -0.61 -6.91 3.29 -169.98 -0.56 -7.47 16 6 C 0.57 7.15 5.55 -10.99 -0.06 7.09 16 7 O -0.52 -8.44 17.23 5.56 0.10 -8.35 16 8 C -0.22 -2.06 1.14 -155.66 -0.18 -2.23 16 9 C 0.34 3.28 2.18 -26.73 -0.06 3.22 16 10 C -0.19 -1.87 8.69 37.16 0.32 -1.54 16 11 F -0.19 -1.86 15.66 2.25 0.04 -1.82 16 12 F -0.19 -1.97 15.04 2.25 0.03 -1.93 16 13 C -0.15 -1.02 8.90 -26.73 -0.24 -1.26 16 14 C -0.12 -0.95 9.62 -26.73 -0.26 -1.21 16 15 C 0.11 1.30 6.18 -2.98 -0.02 1.28 16 16 C -0.09 -1.02 2.61 -89.25 -0.23 -1.25 16 17 H 0.09 0.92 7.85 -51.93 -0.41 0.51 16 18 C -0.12 -1.76 4.53 -26.73 -0.12 -1.88 16 19 C 0.16 2.96 6.08 -4.04 -0.02 2.94 16 20 N -0.76 -18.40 5.41 -59.91 -0.32 -18.72 16 21 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 22 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 23 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 24 N -0.94 -29.91 13.97 55.49 0.78 -29.13 16 25 Si 0.89 22.50 27.74 -169.99 -4.71 17.79 16 26 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.28 -6.66 6.52 56.52 0.37 -6.30 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.39 8.11 -51.93 -0.42 -0.03 16 32 H 0.09 0.74 5.21 -51.93 -0.27 0.47 16 33 H 0.07 0.52 8.02 -51.93 -0.42 0.11 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.01 7.34 -51.93 -0.38 0.62 16 37 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.12 0.77 7.30 -51.93 -0.38 0.39 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 1.35 6.59 -51.93 -0.34 1.01 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.03 0.53 6.88 -51.93 -0.36 0.17 16 47 H 0.36 8.52 5.53 -40.82 -0.23 8.29 16 48 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -34.13 385.22 -7.78 -41.91 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.85 Total: 5.10 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.08 Total: -3.17 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.11 Total: -55.33 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.10 Total: -8.35 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.07 Total: -3.76 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.13 -7.78 -41.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104688822.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.868 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds