Wall clock time and date at job start Tue Mar 31 2020 17:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 110.65731 * 2 1 4 4 C 1.54595 * 110.99111 * 236.84575 * 2 1 3 5 5 N 1.48119 * 103.42425 * 204.37264 * 4 2 1 6 6 C 1.34771 * 127.03342 * 219.28258 * 5 4 2 7 7 O 1.21282 * 119.99641 * 174.21863 * 6 5 4 8 8 C 1.50695 * 120.00156 * 354.22823 * 6 5 4 9 9 C 1.53002 * 115.56547 * 88.75555 * 8 6 5 10 10 C 1.53000 * 109.46731 * 40.32126 * 9 8 6 11 11 F 1.39903 * 109.47133 * 160.31690 * 9 8 6 12 12 F 1.39902 * 109.47119 * 280.31937 * 9 8 6 13 13 C 1.53003 * 117.49840 * 303.06643 * 8 6 5 14 14 C 1.52997 * 60.00218 * 252.51386 * 13 8 6 15 15 C 1.47484 * 105.92962 * 39.02032 * 5 4 2 16 16 C 1.54005 * 107.08759 * 334.78390 * 15 5 4 17 17 H 1.08996 * 110.33292 * 120.19690 * 16 15 5 18 18 C 1.53002 * 110.32374 * 242.41600 * 16 15 5 19 19 C 1.53005 * 109.46851 * 293.54064 * 18 16 15 20 20 N 1.46498 * 109.46821 * 180.02562 * 19 18 16 21 21 C 1.36945 * 119.99889 * 180.02562 * 20 19 18 22 22 H 1.07995 * 119.99886 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00187 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00132 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99711 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47347 * 89.99994 * 25 23 21 27 27 H 1.48505 * 109.46797 * 209.99956 * 25 23 21 28 28 H 1.48494 * 109.47244 * 329.99549 * 25 23 21 29 29 H 1.08992 * 109.47167 * 296.80906 * 1 2 3 30 30 H 1.09004 * 109.46769 * 56.81032 * 1 2 3 31 31 H 1.09001 * 109.47165 * 176.80684 * 1 2 3 32 32 H 1.08998 * 110.61641 * 85.85503 * 4 2 1 33 33 H 1.09004 * 110.54517 * 322.85341 * 4 2 1 34 34 H 1.08996 * 109.47548 * 56.98419 * 10 9 8 35 35 H 1.09002 * 109.46976 * 176.98549 * 10 9 8 36 36 H 1.09000 * 109.47003 * 296.98061 * 10 9 8 37 37 H 1.08998 * 117.49966 * 145.02022 * 13 8 6 38 38 H 1.09004 * 117.49530 * 359.97438 * 13 8 6 39 39 H 1.09002 * 117.50518 * 107.48735 * 14 13 8 40 40 H 1.09003 * 117.49797 * 252.48890 * 14 13 8 41 41 H 1.09006 * 109.91128 * 94.14012 * 15 5 4 42 42 H 1.09001 * 109.91414 * 215.41713 * 15 5 4 43 43 H 1.08998 * 109.47551 * 53.53774 * 18 16 15 44 44 H 1.08995 * 109.47066 * 173.54464 * 18 16 15 45 45 H 1.08995 * 109.47283 * 300.00008 * 19 18 16 46 46 H 1.08995 * 109.46959 * 60.00335 * 19 18 16 47 47 H 0.96998 * 120.00330 * 0.02562 * 20 19 18 48 48 H 0.97002 * 119.99763 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0200 0.0000 4 6 2.0838 -0.7894 -1.2084 5 7 3.4322 -1.2056 -0.7584 6 6 4.5594 -1.2405 -1.4965 7 8 5.6203 -1.5039 -0.9711 8 6 4.5015 -0.9519 -2.9744 9 6 4.6541 0.5191 -3.3664 10 6 5.7291 1.1705 -2.4941 11 9 5.0287 0.6068 -4.7115 12 9 3.4360 1.1808 -3.1775 13 6 3.5719 -1.8176 -3.8273 14 6 5.0879 -2.0002 -3.9223 15 6 3.2903 -1.5679 0.6641 16 6 2.0775 -0.7916 1.2101 17 1 1.3221 -1.4829 1.5834 18 6 2.5158 0.1678 2.3184 19 6 3.0053 -0.6361 3.5247 20 7 3.4243 0.2825 4.5862 21 6 3.9032 -0.2119 5.7700 22 1 3.9715 -1.2791 5.9213 23 6 4.2998 0.6584 6.7760 24 7 4.7596 0.1832 7.9140 25 14 4.1796 2.5042 6.5152 26 1 2.8486 2.9825 6.9676 27 1 5.2424 3.1850 7.2977 28 1 4.3524 2.8126 5.0729 29 1 -0.3633 0.4635 0.9171 30 1 -0.3633 0.5626 -0.8601 31 1 -0.3633 -1.0261 -0.0572 32 1 2.1525 -0.1479 -2.0869 33 1 1.4612 -1.6601 -1.4143 34 1 6.6649 0.6220 -2.6005 35 1 5.8757 2.2037 -2.8090 36 1 5.4124 1.1499 -1.4513 37 1 3.0689 -1.3390 -4.6676 38 1 3.0025 -2.5960 -3.3194 39 1 5.5157 -2.8983 -3.4768 40 1 5.5824 -1.6420 -4.8253 41 1 3.1179 -2.6401 0.7587 42 1 4.1896 -1.2843 1.2110 43 1 3.3235 0.8015 1.9522 44 1 1.6716 0.7902 2.6150 45 1 2.1976 -1.2697 3.8910 46 1 3.8495 -1.2585 3.2281 47 1 3.3626 1.2410 4.4505 48 1 5.0363 0.7914 8.6172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104688822.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:03 Heat of formation + Delta-G solvation = -120.946591 kcal Electronic energy + Delta-G solvation = -29910.448324 eV Core-core repulsion = 25636.235480 eV Total energy + Delta-G solvation = -4274.212845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -50.19014 -48.16965 -41.56730 -39.60039 -37.63076 -37.04506 -34.58933 -33.59068 -32.50345 -32.18260 -29.04026 -27.38011 -26.45706 -25.48102 -24.11638 -23.59188 -23.27083 -21.99445 -20.90800 -20.14344 -19.61998 -18.86942 -18.58571 -17.58406 -17.45619 -17.14104 -16.62482 -16.36023 -15.86594 -15.62160 -15.47465 -15.39831 -14.96417 -14.86026 -14.55078 -14.43466 -14.36664 -14.13639 -13.90062 -13.66094 -13.61111 -13.50813 -13.38500 -13.10451 -12.93564 -12.82691 -12.73031 -12.57672 -12.48887 -12.35939 -12.07480 -11.87077 -11.81115 -11.67343 -11.55433 -11.50312 -11.26372 -11.01233 -10.98658 -9.81976 -9.32953 -8.06122 -5.40103 1.23231 1.34693 1.39030 1.46292 1.68209 2.27496 2.45632 2.52271 2.94986 3.02758 3.25021 3.28271 3.43199 3.47387 3.54850 3.62560 3.77477 3.84979 3.97680 4.20787 4.25807 4.34445 4.40723 4.45603 4.47933 4.52781 4.55521 4.59163 4.65391 4.71141 4.74919 4.79840 4.82733 4.85467 4.92753 4.97315 5.00551 5.13129 5.18760 5.26714 5.32182 5.39803 5.55791 5.72062 6.18270 6.38604 6.92573 7.04663 7.80942 8.00038 9.15634 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.015799 B = 0.002973 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.886546 B = 9416.427622 C = 9806.417355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.074 0.926 4 C 0.098 3.902 5 N -0.610 5.610 6 C 0.570 3.430 7 O -0.571 6.571 8 C -0.232 4.232 9 C 0.340 3.660 10 C -0.192 4.192 11 F -0.189 7.189 12 F -0.193 7.193 13 C -0.125 4.125 14 C -0.123 4.123 15 C 0.104 3.896 16 C -0.082 4.082 17 H 0.107 0.893 18 C -0.107 4.107 19 C 0.151 3.849 20 N -0.761 5.761 21 C -0.240 4.240 22 H 0.054 0.946 23 C -0.066 4.066 24 N -0.984 5.984 25 Si 0.959 3.041 26 H -0.272 1.272 27 H -0.294 1.294 28 H -0.255 1.255 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.079 0.921 45 H 0.031 0.969 46 H 0.015 0.985 47 H 0.366 0.634 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.211 -0.817 -32.457 33.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.023 4.023 5 N -0.342 5.342 6 C 0.358 3.642 7 O -0.450 6.450 8 C -0.236 4.236 9 C 0.304 3.696 10 C -0.250 4.250 11 F -0.170 7.170 12 F -0.174 7.174 13 C -0.161 4.161 14 C -0.160 4.160 15 C -0.019 4.019 16 C -0.102 4.102 17 H 0.125 0.875 18 C -0.145 4.145 19 C 0.025 3.975 20 N -0.407 5.407 21 C -0.371 4.371 22 H 0.072 0.928 23 C -0.257 4.257 24 N -0.635 5.635 25 Si 0.786 3.214 26 H -0.198 1.198 27 H -0.221 1.221 28 H -0.180 1.180 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.146 0.854 38 H 0.138 0.862 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.049 0.951 46 H 0.033 0.967 47 H 0.199 0.801 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.538 -1.126 -32.125 33.259 hybrid contribution 0.579 1.015 0.848 1.444 sum -7.959 -0.111 -31.276 32.273 Atomic orbital electron populations 1.21711 0.91643 1.03215 1.02775 1.22252 0.97714 0.98894 0.92619 0.90731 1.22956 0.81117 0.99966 0.98305 1.48809 1.09273 1.64651 1.11479 1.18966 0.82112 0.76559 0.86559 1.90741 1.30186 1.50691 1.73356 1.22198 1.16501 0.93300 0.91593 1.19848 0.81599 0.89415 0.78758 1.22745 0.98819 1.03639 0.99791 1.93007 1.91440 1.96802 1.35775 1.92992 1.47061 1.82367 1.95010 1.23340 0.93270 0.99571 0.99962 1.23235 0.97255 0.96996 0.98486 1.22254 0.99055 0.99803 0.80778 1.22097 0.96252 0.97149 0.94676 0.87491 1.21710 1.00909 0.97990 0.93931 1.20878 0.96395 0.92574 0.87604 1.42760 1.78729 1.04812 1.14411 1.19065 1.33714 0.92832 0.91441 0.92773 1.25570 1.01339 1.03070 0.95715 1.69893 1.51138 1.35666 1.06783 0.85351 0.77667 0.80129 0.78294 1.19787 1.22104 1.17968 0.92207 0.91069 0.91008 0.88622 0.88200 0.88783 0.88142 0.91074 0.85383 0.86171 0.87511 0.85411 0.90404 0.92963 0.93021 0.90275 0.95121 0.96668 0.80127 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.17 71.98 0.66 -0.83 16 2 C -0.10 -1.49 3.18 -9.70 -0.03 -1.52 16 3 H 0.07 1.34 7.87 -2.38 -0.02 1.32 16 4 C 0.10 1.40 5.74 86.61 0.50 1.90 16 5 N -0.61 -13.17 3.29 -810.08 -2.67 -15.84 16 6 C 0.57 14.10 5.55 87.66 0.49 14.59 16 7 O -0.57 -19.29 17.23 -3.04 -0.05 -19.34 16 8 C -0.23 -4.09 1.14 -52.93 -0.06 -4.15 16 9 C 0.34 6.13 2.18 30.60 0.07 6.20 16 10 C -0.19 -3.69 8.69 71.98 0.63 -3.07 16 11 F -0.19 -3.27 15.66 44.97 0.70 -2.57 16 12 F -0.19 -3.55 15.04 44.97 0.68 -2.88 16 13 C -0.12 -1.35 8.90 30.59 0.27 -1.08 16 14 C -0.12 -1.68 9.62 30.60 0.29 -1.38 16 15 C 0.10 2.52 6.18 86.53 0.53 3.05 16 16 C -0.08 -1.69 2.61 -9.90 -0.03 -1.71 16 17 H 0.11 1.89 7.85 -2.39 -0.02 1.87 16 18 C -0.11 -3.00 4.53 30.60 0.14 -2.86 16 19 C 0.15 5.80 6.08 86.38 0.53 6.32 16 20 N -0.76 -36.97 5.41 -343.46 -1.86 -38.82 16 21 C -0.24 -14.24 10.47 84.03 0.88 -13.36 16 22 H 0.05 3.52 8.06 -2.91 -0.02 3.50 16 23 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 24 N -0.98 -64.72 13.97 21.65 0.30 -64.42 16 25 Si 0.96 46.55 27.74 68.60 1.90 48.46 16 26 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 27 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 28 H -0.25 -11.28 6.52 99.48 0.65 -10.63 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 0.63 8.11 -2.39 -0.02 0.61 16 32 H 0.10 1.29 5.21 -2.39 -0.01 1.28 16 33 H 0.10 0.97 8.02 -2.38 -0.02 0.95 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.64 7.34 -2.39 -0.02 1.62 16 37 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.13 1.44 7.30 -2.39 -0.02 1.42 16 41 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.05 1.66 6.59 -2.39 -0.02 1.65 16 43 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.02 0.63 6.88 -2.39 -0.02 0.61 16 47 H 0.37 16.81 5.53 -92.71 -0.51 16.30 16 48 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -76.65 385.22 4.72 -71.92 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.39 Total: 24.91 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 5.33 Total: -1.43 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -4.22 Total: -119.08 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.05 Total: -19.34 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 1.38 Total: -5.44 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.90 Total: 48.46 kcal Total: -76.65 4.72 -71.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104688822.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.025 kcal (2) G-P(sol) polarization free energy of solvation -76.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds