Wall clock time and date at job start Tue Mar 31 2020 17:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.65601 * 2 1 4 4 C 1.54946 * 110.73973 * 236.61019 * 2 1 3 5 5 N 1.48119 * 103.25300 * 204.28245 * 4 2 1 6 6 C 1.34772 * 127.03416 * 219.33106 * 5 4 2 7 7 O 1.21275 * 120.00023 * 355.32734 * 6 5 4 8 8 C 1.50699 * 120.00117 * 175.31975 * 6 5 4 9 9 C 1.53007 * 112.84631 * 56.24076 * 8 6 5 10 10 C 1.53774 * 113.61744 * 284.93313 * 8 6 5 11 11 C 1.53776 * 87.08254 * 220.01885 * 10 8 6 12 12 F 1.39907 * 113.61294 * 270.88359 * 11 10 8 13 13 F 1.39900 * 113.61550 * 139.98132 * 11 10 8 14 14 C 1.53780 * 87.08247 * 25.43190 * 11 10 8 15 15 C 1.47487 * 105.93125 * 39.29115 * 5 4 2 16 16 C 1.54000 * 107.08416 * 334.55246 * 15 5 4 17 17 H 1.09002 * 110.32817 * 120.29947 * 16 15 5 18 18 C 1.53009 * 110.32512 * 242.41314 * 16 15 5 19 19 C 1.52999 * 109.46916 * 293.54832 * 18 16 15 20 20 N 1.46494 * 109.46999 * 179.97438 * 19 18 16 21 21 C 1.36935 * 120.00210 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99888 * 0.02562 * 21 20 19 23 23 C 1.38819 * 120.00416 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99469 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00140 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47379 * 60.00274 * 25 23 21 27 27 H 1.48506 * 109.47156 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47251 * 300.00022 * 25 23 21 29 29 H 1.09004 * 109.47055 * 296.81231 * 1 2 3 30 30 H 1.08995 * 109.46995 * 56.80783 * 1 2 3 31 31 H 1.08996 * 109.46745 * 176.81108 * 1 2 3 32 32 H 1.09000 * 110.66114 * 322.72574 * 4 2 1 33 33 H 1.09003 * 110.66189 * 85.67688 * 4 2 1 34 34 H 1.08994 * 109.47424 * 53.56664 * 9 8 6 35 35 H 1.09004 * 109.46758 * 173.57025 * 9 8 6 36 36 H 1.08997 * 109.46888 * 293.56439 * 9 8 6 37 37 H 1.09003 * 113.61519 * 334.56825 * 10 8 6 38 38 H 1.09000 * 113.61643 * 105.46663 * 10 8 6 39 39 H 1.09001 * 113.61515 * 220.02172 * 14 11 10 40 40 H 1.08992 * 113.68987 * 89.12585 * 14 11 10 41 41 H 1.08999 * 109.91377 * 215.18451 * 15 5 4 42 42 H 1.09003 * 109.91245 * 93.91119 * 15 5 4 43 43 H 1.09004 * 109.46767 * 53.54508 * 18 16 15 44 44 H 1.08994 * 109.46936 * 173.54931 * 18 16 15 45 45 H 1.09004 * 109.47138 * 299.99449 * 19 18 16 46 46 H 1.08995 * 109.47792 * 59.99764 * 19 18 16 47 47 H 0.97002 * 120.00248 * 359.97438 * 20 19 18 48 48 H 0.97004 * 119.99694 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0787 -0.7975 -1.2099 5 7 3.4280 -1.2111 -0.7602 6 6 4.5539 -1.2495 -1.4999 7 8 4.5083 -1.0038 -2.6867 8 6 5.8694 -1.5976 -0.8525 9 6 5.8389 -2.9480 -0.1338 10 6 6.4585 -0.4589 -0.0034 11 6 7.8325 -0.8520 -0.5712 12 9 8.4945 -1.8244 0.1862 13 9 8.6453 0.2438 -0.8807 14 6 7.0800 -1.4231 -1.7846 15 6 3.2875 -1.5715 0.6631 16 6 2.0776 -0.7915 1.2100 17 1 1.3218 -1.4806 1.5870 18 6 2.5200 0.1681 2.3167 19 6 3.0095 -0.6357 3.5230 20 7 3.4337 0.2830 4.5823 21 6 3.9125 -0.2112 5.7661 22 1 3.9778 -1.2784 5.9188 23 6 4.3150 0.6593 6.7698 24 7 4.2367 1.9599 6.5831 25 14 4.9688 -0.0150 8.3844 26 1 6.1735 -0.8430 8.1235 27 1 5.3284 1.1120 9.2821 28 1 3.9248 -0.8500 9.0311 29 1 -0.3633 0.4636 0.9172 30 1 -0.3633 0.5626 -0.8600 31 1 -0.3633 -1.0261 -0.0572 32 1 1.4559 -1.6693 -1.4102 33 1 2.1430 -0.1612 -2.0926 34 1 5.4913 -3.7182 -0.8222 35 1 6.8415 -3.1971 0.2141 36 1 5.1624 -2.8905 0.7189 37 1 6.1261 0.5325 -0.3114 38 1 6.3667 -0.6224 1.0704 39 1 7.4900 -2.3650 -2.1489 40 1 6.9170 -0.6964 -2.5805 41 1 4.1883 -1.2895 1.2081 42 1 3.1126 -2.6432 0.7592 43 1 3.3287 0.7994 1.9483 44 1 1.6778 0.7929 2.6139 45 1 2.2008 -1.2669 3.8914 46 1 3.8517 -1.2606 3.2258 47 1 3.3754 1.2415 4.4451 48 1 4.5176 2.5682 7.2846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104896666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:12 Heat of formation + Delta-G solvation = -109.411438 kcal Electronic energy + Delta-G solvation = -29904.212404 eV Core-core repulsion = 25630.499761 eV Total energy + Delta-G solvation = -4273.712643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -48.99263 -47.30921 -40.89144 -38.87852 -37.21245 -35.13898 -33.37391 -32.24792 -30.21800 -29.67938 -27.27134 -26.88460 -26.39036 -24.81443 -23.84790 -22.55767 -21.19263 -20.37677 -20.12559 -18.94298 -18.00084 -17.11998 -16.94619 -16.73331 -16.34142 -16.08975 -15.34980 -14.85848 -14.73506 -14.51814 -14.27570 -14.13663 -13.87269 -13.74613 -13.57672 -13.48800 -13.23207 -13.05138 -12.96543 -12.61160 -12.55390 -12.38100 -12.33825 -12.01687 -11.91643 -11.51601 -11.41986 -11.23940 -11.15857 -11.04530 -10.85776 -10.67299 -10.60290 -10.48814 -10.37080 -10.02226 -9.89195 -9.69207 -8.89754 -8.85565 -6.95631 -5.79207 -3.08253 2.34783 2.68659 3.24452 3.42347 3.46939 3.47890 3.53267 3.91305 3.95194 4.07819 4.31774 4.42840 4.52848 4.62346 4.68526 4.80855 5.02896 5.06576 5.15837 5.19085 5.29910 5.30929 5.37060 5.41555 5.44569 5.48839 5.52486 5.54783 5.57205 5.60266 5.69265 5.74045 5.74683 5.87057 5.95659 5.97667 6.00834 6.06822 6.22287 6.30607 6.37851 6.76097 6.81000 7.33465 7.66405 7.91962 8.39689 9.50779 10.08590 10.42525 11.43561 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.008957 B = 0.004002 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.187511 B = 6995.068239 C = 9346.699075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.085 0.915 4 C 0.109 3.891 5 N -0.614 5.614 6 C 0.556 3.444 7 O -0.541 6.541 8 C -0.099 4.099 9 C -0.146 4.146 10 C -0.151 4.151 11 C 0.259 3.741 12 F -0.174 7.174 13 F -0.187 7.187 14 C -0.137 4.137 15 C 0.097 3.903 16 C -0.093 4.093 17 H 0.088 0.912 18 C -0.118 4.118 19 C 0.152 3.848 20 N -0.734 5.734 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.779 -7.895 -18.362 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.103 0.897 4 C -0.014 4.014 5 N -0.347 5.347 6 C 0.344 3.656 7 O -0.418 6.418 8 C -0.102 4.102 9 C -0.203 4.203 10 C -0.189 4.189 11 C 0.222 3.778 12 F -0.155 7.155 13 F -0.168 7.168 14 C -0.176 4.176 15 C -0.025 4.025 16 C -0.112 4.112 17 H 0.106 0.894 18 C -0.156 4.156 19 C 0.024 3.976 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.141 0.859 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.036 0.964 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.609 -7.883 -18.903 20.544 hybrid contribution 0.538 0.001 1.124 1.247 sum -1.071 -7.881 -17.778 19.476 Atomic orbital electron populations 1.21730 0.93751 1.02035 1.02318 1.22369 0.96216 0.99765 0.93840 0.89676 1.22567 0.82290 0.98661 0.97846 1.48709 1.08135 1.65750 1.12073 1.19572 0.83559 0.76532 0.85906 1.90698 1.86012 1.50238 1.14900 1.21786 0.92588 0.98116 0.97726 1.21935 1.04774 0.92888 1.00673 1.24172 0.91352 1.00232 1.03132 1.21873 0.84651 0.77896 0.93358 1.93009 1.82952 1.62286 1.77267 1.93023 1.76405 1.54177 1.93196 1.24049 0.92542 1.04432 0.96551 1.22543 1.00251 0.99243 0.80472 1.22171 0.96450 0.97494 0.95121 0.89377 1.21814 1.01234 0.97802 0.94752 1.20692 0.96050 0.92874 0.87940 1.42353 1.77122 1.05019 1.13270 1.19168 1.34580 0.91914 0.91624 0.91281 1.24738 1.02207 0.95294 0.98608 1.69649 1.53785 1.00812 1.33934 0.86284 0.78820 0.77529 0.83655 1.21229 1.21659 1.21251 0.91722 0.92523 0.92412 0.90950 0.90017 0.91344 0.90019 0.90254 0.86551 0.87199 0.88252 0.85887 0.89484 0.91119 0.91861 0.91384 0.96438 0.96571 0.78318 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.16 37.16 0.34 -0.77 16 2 C -0.10 -0.96 3.21 -88.75 -0.28 -1.25 16 3 H 0.08 0.88 7.86 -51.93 -0.41 0.47 16 4 C 0.11 1.06 6.51 -2.12 -0.01 1.05 16 5 N -0.61 -6.70 3.29 -169.76 -0.56 -7.25 16 6 C 0.56 6.81 6.95 -10.99 -0.08 6.73 16 7 O -0.54 -8.20 16.22 5.56 0.09 -8.11 16 8 C -0.10 -1.03 0.73 -154.85 -0.11 -1.14 16 9 C -0.15 -1.32 8.62 37.16 0.32 -1.00 16 10 C -0.15 -1.64 6.39 -25.92 -0.17 -1.81 16 11 C 0.26 2.94 3.26 -25.92 -0.08 2.86 16 12 F -0.17 -2.13 15.50 2.25 0.03 -2.10 16 13 F -0.19 -2.42 17.41 2.25 0.04 -2.39 16 14 C -0.14 -1.38 6.73 -25.92 -0.17 -1.55 16 15 C 0.10 1.00 4.40 -2.98 -0.01 0.98 16 16 C -0.09 -0.97 2.61 -89.25 -0.23 -1.21 16 17 H 0.09 0.87 7.85 -51.93 -0.41 0.46 16 18 C -0.12 -1.65 4.52 -26.73 -0.12 -1.77 16 19 C 0.15 2.76 6.08 -4.05 -0.02 2.74 16 20 N -0.73 -17.85 5.60 -59.91 -0.34 -18.19 16 21 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 25 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.07 0.63 8.02 -51.93 -0.42 0.21 16 33 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.74 6.17 -51.93 -0.32 0.42 16 36 H 0.08 0.70 5.21 -51.93 -0.27 0.43 16 37 H 0.12 1.26 8.09 -51.93 -0.42 0.84 16 38 H 0.11 1.23 7.81 -51.93 -0.41 0.82 16 39 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.12 1.29 7.54 -51.93 -0.39 0.89 16 41 H 0.09 0.97 4.60 -51.93 -0.24 0.73 16 42 H 0.07 0.64 7.73 -51.93 -0.40 0.24 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.02 0.29 6.88 -51.93 -0.36 -0.07 16 47 H 0.38 9.88 7.67 -40.82 -0.31 9.57 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -31.87 381.14 -7.86 -39.73 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.68 Total: 5.97 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.89 Total: -3.34 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.17 Total: -52.56 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.07 Total: -4.48 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.87 -7.86 -39.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104896666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.685 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds