Wall clock time and date at job start Tue Mar 31 2020 17:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.65601 * 2 1 4 4 C 1.54946 * 110.73973 * 236.61019 * 2 1 3 5 5 N 1.48119 * 103.25300 * 204.28245 * 4 2 1 6 6 C 1.34772 * 127.03416 * 219.33106 * 5 4 2 7 7 O 1.21275 * 120.00023 * 355.32734 * 6 5 4 8 8 C 1.50699 * 120.00117 * 175.31975 * 6 5 4 9 9 C 1.53007 * 112.84631 * 56.24076 * 8 6 5 10 10 C 1.53774 * 113.61744 * 284.93313 * 8 6 5 11 11 C 1.53776 * 87.08254 * 220.01885 * 10 8 6 12 12 F 1.39907 * 113.61294 * 270.88359 * 11 10 8 13 13 F 1.39900 * 113.61550 * 139.98132 * 11 10 8 14 14 C 1.53780 * 87.08247 * 25.43190 * 11 10 8 15 15 C 1.47487 * 105.93125 * 39.29115 * 5 4 2 16 16 C 1.54000 * 107.08416 * 334.55246 * 15 5 4 17 17 H 1.09002 * 110.32817 * 120.29947 * 16 15 5 18 18 C 1.53009 * 110.32512 * 242.41314 * 16 15 5 19 19 C 1.52999 * 109.46916 * 293.54832 * 18 16 15 20 20 N 1.46494 * 109.46999 * 179.97438 * 19 18 16 21 21 C 1.36935 * 120.00210 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99888 * 0.02562 * 21 20 19 23 23 C 1.38819 * 120.00416 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99469 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00140 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47379 * 60.00274 * 25 23 21 27 27 H 1.48506 * 109.47156 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47251 * 300.00022 * 25 23 21 29 29 H 1.09004 * 109.47055 * 296.81231 * 1 2 3 30 30 H 1.08995 * 109.46995 * 56.80783 * 1 2 3 31 31 H 1.08996 * 109.46745 * 176.81108 * 1 2 3 32 32 H 1.09000 * 110.66114 * 322.72574 * 4 2 1 33 33 H 1.09003 * 110.66189 * 85.67688 * 4 2 1 34 34 H 1.08994 * 109.47424 * 53.56664 * 9 8 6 35 35 H 1.09004 * 109.46758 * 173.57025 * 9 8 6 36 36 H 1.08997 * 109.46888 * 293.56439 * 9 8 6 37 37 H 1.09003 * 113.61519 * 334.56825 * 10 8 6 38 38 H 1.09000 * 113.61643 * 105.46663 * 10 8 6 39 39 H 1.09001 * 113.61515 * 220.02172 * 14 11 10 40 40 H 1.08992 * 113.68987 * 89.12585 * 14 11 10 41 41 H 1.08999 * 109.91377 * 215.18451 * 15 5 4 42 42 H 1.09003 * 109.91245 * 93.91119 * 15 5 4 43 43 H 1.09004 * 109.46767 * 53.54508 * 18 16 15 44 44 H 1.08994 * 109.46936 * 173.54931 * 18 16 15 45 45 H 1.09004 * 109.47138 * 299.99449 * 19 18 16 46 46 H 1.08995 * 109.47792 * 59.99764 * 19 18 16 47 47 H 0.97002 * 120.00248 * 359.97438 * 20 19 18 48 48 H 0.97004 * 119.99694 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0787 -0.7975 -1.2099 5 7 3.4280 -1.2111 -0.7602 6 6 4.5539 -1.2495 -1.4999 7 8 4.5083 -1.0038 -2.6867 8 6 5.8694 -1.5976 -0.8525 9 6 5.8389 -2.9480 -0.1338 10 6 6.4585 -0.4589 -0.0034 11 6 7.8325 -0.8520 -0.5712 12 9 8.4945 -1.8244 0.1862 13 9 8.6453 0.2438 -0.8807 14 6 7.0800 -1.4231 -1.7846 15 6 3.2875 -1.5715 0.6631 16 6 2.0776 -0.7915 1.2100 17 1 1.3218 -1.4806 1.5870 18 6 2.5200 0.1681 2.3167 19 6 3.0095 -0.6357 3.5230 20 7 3.4337 0.2830 4.5823 21 6 3.9125 -0.2112 5.7661 22 1 3.9778 -1.2784 5.9188 23 6 4.3150 0.6593 6.7698 24 7 4.2367 1.9599 6.5831 25 14 4.9688 -0.0150 8.3844 26 1 6.1735 -0.8430 8.1235 27 1 5.3284 1.1120 9.2821 28 1 3.9248 -0.8500 9.0311 29 1 -0.3633 0.4636 0.9172 30 1 -0.3633 0.5626 -0.8600 31 1 -0.3633 -1.0261 -0.0572 32 1 1.4559 -1.6693 -1.4102 33 1 2.1430 -0.1612 -2.0926 34 1 5.4913 -3.7182 -0.8222 35 1 6.8415 -3.1971 0.2141 36 1 5.1624 -2.8905 0.7189 37 1 6.1261 0.5325 -0.3114 38 1 6.3667 -0.6224 1.0704 39 1 7.4900 -2.3650 -2.1489 40 1 6.9170 -0.6964 -2.5805 41 1 4.1883 -1.2895 1.2081 42 1 3.1126 -2.6432 0.7592 43 1 3.3287 0.7994 1.9483 44 1 1.6778 0.7929 2.6139 45 1 2.2008 -1.2669 3.8914 46 1 3.8517 -1.2606 3.2258 47 1 3.3754 1.2415 4.4451 48 1 4.5176 2.5682 7.2846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104896666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:10 Heat of formation + Delta-G solvation = -127.662176 kcal Electronic energy + Delta-G solvation = -29905.003815 eV Core-core repulsion = 25630.499761 eV Total energy + Delta-G solvation = -4274.504054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -49.95063 -48.28357 -41.79386 -39.77313 -38.18479 -36.77405 -34.53640 -33.62427 -31.75737 -30.47388 -28.50071 -27.74788 -27.22950 -26.08097 -25.05638 -23.94493 -22.29854 -21.41000 -21.01096 -19.81832 -19.09697 -18.92013 -17.85240 -17.68515 -17.24973 -17.05456 -16.60410 -16.24321 -15.85301 -15.55039 -15.31826 -15.18951 -15.13263 -15.02918 -14.67872 -14.66422 -14.30480 -14.14654 -13.84577 -13.59786 -13.40226 -13.30823 -13.23587 -13.01411 -12.93113 -12.79035 -12.71804 -12.40992 -12.33300 -12.25461 -12.14430 -12.04318 -11.84872 -11.61052 -11.48713 -11.45857 -11.20092 -10.89002 -10.83219 -9.74621 -8.95565 -7.92626 -5.20655 1.40711 1.49351 1.51662 1.57643 1.82071 2.35377 2.58387 2.65848 3.06283 3.07875 3.20448 3.41821 3.48296 3.56315 3.68679 3.80401 3.97139 4.15767 4.21832 4.31149 4.32257 4.34216 4.46502 4.50374 4.53231 4.56831 4.60458 4.67651 4.76668 4.79707 4.82356 4.83164 4.86017 4.90315 4.97557 5.00765 5.15222 5.18971 5.24543 5.31614 5.40658 5.43852 5.53539 5.58552 6.30099 6.43506 6.98857 7.36456 8.14717 8.35341 9.30924 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.008957 B = 0.004002 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.187511 B = 6995.068239 C = 9346.699075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.072 0.928 4 C 0.108 3.892 5 N -0.612 5.612 6 C 0.554 3.446 7 O -0.574 6.574 8 C -0.093 4.093 9 C -0.143 4.143 10 C -0.151 4.151 11 C 0.253 3.747 12 F -0.179 7.179 13 F -0.199 7.199 14 C -0.130 4.130 15 C 0.097 3.903 16 C -0.084 4.084 17 H 0.104 0.896 18 C -0.104 4.104 19 C 0.149 3.851 20 N -0.749 5.749 21 C -0.242 4.242 22 H 0.077 0.923 23 C -0.075 4.075 24 N -0.971 5.971 25 Si 0.969 3.031 26 H -0.278 1.278 27 H -0.298 1.298 28 H -0.277 1.277 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.023 0.977 46 H 0.027 0.973 47 H 0.372 0.628 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 -9.910 -18.749 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.014 4.014 5 N -0.344 5.344 6 C 0.343 3.657 7 O -0.454 6.454 8 C -0.096 4.096 9 C -0.200 4.200 10 C -0.189 4.189 11 C 0.217 3.783 12 F -0.160 7.160 13 F -0.179 7.179 14 C -0.168 4.168 15 C -0.025 4.025 16 C -0.104 4.104 17 H 0.122 0.878 18 C -0.142 4.142 19 C 0.023 3.977 20 N -0.392 5.392 21 C -0.374 4.374 22 H 0.095 0.905 23 C -0.268 4.268 24 N -0.622 5.622 25 Si 0.798 3.202 26 H -0.204 1.204 27 H -0.224 1.224 28 H -0.203 1.203 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.041 0.959 46 H 0.045 0.955 47 H 0.203 0.797 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.431 -9.945 -19.298 21.845 hybrid contribution 0.750 0.617 1.201 1.544 sum -1.682 -9.328 -18.097 20.429 Atomic orbital electron populations 1.21711 0.92271 1.03043 1.02445 1.22286 0.97329 0.98807 0.93007 0.90973 1.22672 0.81919 0.99288 0.97510 1.48765 1.08339 1.65003 1.12282 1.19809 0.84254 0.76093 0.85569 1.90682 1.86529 1.51903 1.16314 1.21781 0.91778 0.98520 0.97510 1.21944 1.04994 0.92168 1.00854 1.24162 0.91281 1.00489 1.02967 1.22059 0.84420 0.77668 0.94158 1.92996 1.83093 1.62384 1.77498 1.92998 1.76768 1.54858 1.93316 1.24016 0.91970 1.05012 0.95828 1.22601 0.99648 1.00399 0.79852 1.22100 0.96970 0.97070 0.94245 0.87752 1.21645 1.00478 0.97830 0.94225 1.20912 0.96358 0.92575 0.87811 1.42625 1.77153 1.05353 1.14020 1.19606 1.32985 0.92306 0.92504 0.90478 1.25527 1.03602 0.95597 1.02036 1.69808 1.55700 1.01987 1.34692 0.85277 0.78481 0.76689 0.79740 1.20414 1.22443 1.20280 0.92281 0.91682 0.91044 0.89079 0.90884 0.90206 0.89958 0.89919 0.86880 0.87592 0.86507 0.86403 0.90407 0.88932 0.92930 0.92008 0.95944 0.95466 0.79669 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.16 71.98 0.66 -1.17 16 2 C -0.09 -1.60 3.21 -9.58 -0.03 -1.63 16 3 H 0.07 1.42 7.86 -2.38 -0.02 1.40 16 4 C 0.11 1.88 6.51 86.73 0.56 2.45 16 5 N -0.61 -12.26 3.29 -809.39 -2.66 -14.92 16 6 C 0.55 12.92 6.95 87.66 0.61 13.53 16 7 O -0.57 -17.02 16.22 -3.02 -0.05 -17.07 16 8 C -0.09 -1.82 0.73 -52.40 -0.04 -1.85 16 9 C -0.14 -2.29 8.62 71.98 0.62 -1.67 16 10 C -0.15 -3.24 6.39 31.12 0.20 -3.04 16 11 C 0.25 5.65 3.26 31.12 0.10 5.75 16 12 F -0.18 -4.24 15.50 44.97 0.70 -3.54 16 13 F -0.20 -5.15 17.41 44.97 0.78 -4.36 16 14 C -0.13 -2.49 6.73 31.12 0.21 -2.28 16 15 C 0.10 1.75 4.40 86.53 0.38 2.14 16 16 C -0.08 -1.58 2.61 -9.90 -0.03 -1.60 16 17 H 0.10 1.70 7.85 -2.39 -0.02 1.68 16 18 C -0.10 -2.79 4.52 30.60 0.14 -2.66 16 19 C 0.15 5.23 6.08 86.38 0.53 5.76 16 20 N -0.75 -36.31 5.60 -343.46 -1.92 -38.23 16 21 C -0.24 -13.09 9.99 84.04 0.84 -12.25 16 22 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 23 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 24 N -0.97 -58.80 13.06 21.65 0.28 -58.51 16 25 Si 0.97 45.30 29.55 68.60 2.03 47.33 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 27 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 28 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 29 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.78 8.10 -2.39 -0.02 0.76 16 32 H 0.09 1.29 8.02 -2.39 -0.02 1.27 16 33 H 0.07 1.44 7.90 -2.39 -0.02 1.42 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.34 6.17 -2.38 -0.01 1.32 16 36 H 0.08 1.27 5.21 -2.39 -0.01 1.26 16 37 H 0.11 2.48 8.09 -2.39 -0.02 2.46 16 38 H 0.11 2.34 7.81 -2.39 -0.02 2.32 16 39 H 0.12 1.81 8.10 -2.39 -0.02 1.79 16 40 H 0.12 2.42 7.54 -2.39 -0.02 2.40 16 41 H 0.08 1.59 4.60 -2.39 -0.01 1.58 16 42 H 0.09 1.33 7.73 -2.39 -0.02 1.32 16 43 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.03 0.92 6.88 -2.39 -0.02 0.90 16 47 H 0.37 19.45 7.67 -92.71 -0.71 18.74 16 48 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 Total: -1.00 -67.95 381.14 4.63 -63.32 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.26 Total: 28.32 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 5.22 Total: -2.33 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -4.30 Total: -111.67 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.05 Total: -17.07 kcal Atomic # 9 Polarization: -9.38 SS G_CDS: 1.48 Total: -7.90 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -67.95 4.63 -63.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104896666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.343 kcal (2) G-P(sol) polarization free energy of solvation -67.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds