Wall clock time and date at job start Tue Mar 31 2020 16:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39898 * 109.47551 * 2 1 4 4 F 1.39894 * 109.47151 * 239.99361 * 2 1 3 5 5 C 1.50711 * 109.46926 * 119.99814 * 2 1 3 6 6 O 1.21283 * 119.99704 * 12.48513 * 5 2 1 7 7 N 1.34771 * 119.99876 * 192.47789 * 5 2 1 8 8 C 1.46927 * 120.63438 * 5.72042 * 7 5 2 9 9 C 1.53187 * 108.77589 * 233.58325 * 8 7 5 10 10 C 1.53042 * 109.31189 * 305.36188 * 9 8 7 11 11 C 1.53039 * 109.53611 * 61.36626 * 10 9 8 12 12 C 1.46930 * 120.63056 * 185.68891 * 7 5 2 13 13 H 1.08991 * 109.70597 * 246.27939 * 12 7 5 14 14 C 1.53006 * 109.58266 * 6.63216 * 12 7 5 15 15 C 1.52999 * 112.84900 * 60.44877 * 14 12 7 16 16 N 1.46501 * 109.47074 * 187.00270 * 15 14 12 17 17 C 1.36938 * 119.99930 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00045 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99786 * 180.27641 * 17 16 15 20 20 N 1.31619 * 119.99793 * 359.73263 * 19 17 16 21 21 Si 1.86794 * 119.99981 * 179.72748 * 19 17 16 22 22 H 1.48505 * 109.47329 * 60.00090 * 21 19 17 23 23 H 1.48499 * 109.47203 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46988 * 300.00236 * 21 19 17 25 25 C 1.53781 * 113.61020 * 191.64308 * 14 12 7 26 26 C 1.53949 * 87.01808 * 89.23212 * 25 14 12 27 27 C 1.53775 * 87.11541 * 25.36098 * 26 25 14 28 28 H 1.09009 * 109.47198 * 300.00414 * 1 2 3 29 29 H 1.08999 * 109.46764 * 59.99815 * 1 2 3 30 30 H 1.08995 * 109.47358 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.58591 * 113.79111 * 8 7 5 32 32 H 1.09004 * 109.70185 * 353.44093 * 8 7 5 33 33 H 1.08997 * 109.49864 * 185.41086 * 9 8 7 34 34 H 1.09005 * 109.49827 * 65.31568 * 9 8 7 35 35 H 1.08998 * 109.45876 * 301.34366 * 10 9 8 36 36 H 1.08998 * 109.44527 * 181.37735 * 10 9 8 37 37 H 1.09002 * 109.49619 * 178.68143 * 11 10 9 38 38 H 1.09003 * 109.52841 * 58.60374 * 11 10 9 39 39 H 1.09002 * 109.47128 * 67.00962 * 15 14 12 40 40 H 1.08996 * 109.47538 * 307.00618 * 15 14 12 41 41 H 0.97002 * 119.99984 * 0.02562 * 16 15 14 42 42 H 0.96997 * 119.99876 * 179.97438 * 20 19 17 43 43 H 1.09002 * 113.60949 * 203.74901 * 25 14 12 44 44 H 1.09000 * 113.61531 * 334.65208 * 25 14 12 45 45 H 1.09001 * 113.53889 * 270.80890 * 26 25 14 46 46 H 1.09007 * 113.74416 * 139.94281 * 26 25 14 47 47 H 1.09001 * 113.61675 * 220.09187 * 27 26 25 48 48 H 1.09003 * 113.69147 * 89.19698 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0323 -0.7104 1.2306 6 8 1.2675 -1.3638 1.9082 7 7 3.3313 -0.6198 1.5779 8 6 4.2431 0.2662 0.8414 9 6 5.4537 -0.5490 0.3760 10 6 6.0901 -1.2436 1.5821 11 6 5.0774 -2.2010 2.2145 12 6 3.8625 -1.4045 2.7008 13 1 4.1630 -0.7355 3.5071 14 6 2.7870 -2.3677 3.2075 15 6 2.3248 -3.3583 2.1371 16 7 1.1864 -4.1288 2.6439 17 6 0.5998 -5.0825 1.8555 18 1 0.9766 -5.2670 0.8603 19 6 -0.4824 -5.8086 2.3335 20 7 -0.9414 -5.5840 3.5465 21 14 -1.2874 -7.1042 1.2553 22 1 -0.2876 -8.1430 0.8994 23 1 -2.4132 -7.7321 1.9927 24 1 -1.8018 -6.4672 0.0164 25 6 3.1370 -3.0304 4.5503 26 6 2.4538 -1.8294 5.2293 27 6 1.6301 -1.6687 3.9408 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.5752 1.0733 1.4944 32 1 3.7296 0.6845 -0.0243 33 1 6.1830 0.1151 -0.0879 34 1 5.1316 -1.2983 -0.3472 35 1 6.3896 -0.4952 2.3158 36 1 6.9663 -1.8046 1.2572 37 1 5.5388 -2.7126 3.0592 38 1 4.7587 -2.9351 1.4745 39 1 3.1423 -4.0365 1.8923 40 1 2.0249 -2.8129 1.2424 41 1 0.8478 -3.9629 3.5376 42 1 -1.6978 -6.0911 3.8804 43 1 2.6227 -3.9769 4.7172 44 1 4.2084 -3.0900 4.7417 45 1 3.1295 -0.9962 5.4224 46 1 1.8552 -2.0992 6.0994 47 1 1.4868 -0.6306 3.6408 48 1 0.7028 -2.2416 3.9394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105497287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:10 Heat of formation + Delta-G solvation = -43.022943 kcal Electronic energy + Delta-G solvation = -32302.129675 eV Core-core repulsion = 28031.295853 eV Total energy + Delta-G solvation = -4270.833822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -49.30519 -47.18797 -41.31938 -37.94601 -37.48748 -33.81670 -32.92775 -31.65729 -31.14770 -30.61674 -27.00839 -25.97102 -25.32438 -23.82350 -23.76582 -22.35507 -21.74392 -20.79759 -19.82172 -18.20188 -17.81839 -17.15832 -16.91878 -16.73069 -15.89885 -15.42865 -15.17494 -14.63007 -14.56002 -14.37274 -14.21121 -13.98583 -13.82259 -13.54137 -13.47489 -13.31949 -13.22431 -12.74542 -12.52850 -12.41590 -12.29845 -12.13538 -11.86412 -11.66369 -11.62391 -11.30530 -11.03519 -10.86620 -10.86165 -10.74874 -10.56591 -10.44589 -10.02491 -9.95784 -9.49678 -9.44630 -9.32069 -8.87304 -8.70030 -8.32309 -6.64400 -5.61736 -2.85812 2.38520 2.67933 3.51423 3.55540 3.56709 3.64021 3.95632 4.35302 4.61274 4.64639 4.70567 4.74832 4.80333 4.97009 5.12776 5.22575 5.28110 5.34390 5.43772 5.45357 5.51111 5.56191 5.63120 5.64776 5.73156 5.75446 5.80161 5.86513 5.99867 6.01853 6.04544 6.12278 6.28915 6.37480 6.42214 6.46153 6.59642 6.61246 6.75382 6.84049 7.07580 7.15877 7.24063 7.34887 7.82534 8.09539 8.59046 9.69384 10.33711 10.68346 11.61838 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.005314 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.696199 B = 5268.031683 C = 6204.996747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.279 3.721 3 F -0.193 7.193 4 F -0.186 7.186 5 C 0.451 3.549 6 O -0.420 6.420 7 N -0.592 5.592 8 C 0.092 3.908 9 C -0.136 4.136 10 C -0.118 4.118 11 C -0.134 4.134 12 C 0.178 3.822 13 H 0.073 0.927 14 C -0.082 4.082 15 C 0.177 3.823 16 N -0.719 5.719 17 C -0.225 4.225 18 H 0.064 0.936 19 C -0.017 4.017 20 N -0.936 5.936 21 Si 0.902 3.098 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.288 1.288 25 C -0.127 4.127 26 C -0.166 4.166 27 C -0.074 4.074 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.000 1.000 40 H 0.031 0.969 41 H 0.384 0.616 42 H 0.253 0.747 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.469 15.946 -3.972 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.239 3.761 3 F -0.174 7.174 4 F -0.167 7.167 5 C 0.234 3.766 6 O -0.289 6.289 7 N -0.328 5.328 8 C -0.030 4.030 9 C -0.174 4.174 10 C -0.156 4.156 11 C -0.172 4.172 12 C 0.075 3.925 13 H 0.091 0.909 14 C -0.083 4.083 15 C 0.050 3.950 16 N -0.364 5.364 17 C -0.357 4.357 18 H 0.082 0.918 19 C -0.213 4.213 20 N -0.586 5.586 21 Si 0.734 3.266 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.216 1.216 25 C -0.165 4.165 26 C -0.203 4.203 27 C -0.112 4.112 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.017 0.983 40 H 0.048 0.952 41 H 0.220 0.780 42 H 0.062 0.938 43 H 0.113 0.887 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.004 15.485 -3.753 19.949 hybrid contribution -0.307 -0.588 -0.600 0.894 sum 11.697 14.896 -4.352 19.434 Atomic orbital electron populations 1.22596 0.88873 1.07325 1.05016 1.21639 0.95874 0.75132 0.83443 1.92934 1.89806 1.37888 1.96782 1.93064 1.90493 1.80784 1.52337 1.20554 0.83843 0.85035 0.87215 1.91174 1.55511 1.35032 1.47230 1.47893 1.07773 1.43876 1.33215 1.22128 0.91378 0.92205 0.97321 1.21934 0.97048 0.99959 0.98465 1.21522 0.98118 0.98679 0.97268 1.22011 0.95071 0.98404 1.01721 1.21038 0.93152 0.91631 0.86664 0.90876 1.22138 0.94975 0.95810 0.95355 1.20738 0.89548 0.90463 0.94264 1.42348 1.34629 1.42213 1.17214 1.19161 1.09272 1.10587 0.96673 0.91827 1.24643 0.99257 1.00575 0.96784 1.69644 1.28172 1.44442 1.16349 0.86332 0.78885 0.81830 0.79557 1.21563 1.21841 1.21554 1.23015 0.99325 0.98768 0.95402 1.23183 1.00099 0.98020 0.99034 1.22860 0.97859 0.99688 0.90775 0.88860 0.89842 0.87562 0.91146 0.88593 0.90834 0.91168 0.91995 0.91664 0.90518 0.90533 0.98272 0.95176 0.77999 0.93754 0.88716 0.92795 0.91797 0.92064 0.92811 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 8.76 37.16 0.33 -1.95 16 2 C 0.28 3.82 1.77 -27.88 -0.05 3.77 16 3 F -0.19 -2.37 14.25 2.25 0.03 -2.34 16 4 F -0.19 -2.73 16.76 2.25 0.04 -2.69 16 5 C 0.45 7.05 5.30 -10.98 -0.06 6.99 16 6 O -0.42 -7.85 7.15 5.55 0.04 -7.81 16 7 N -0.59 -8.01 2.95 -165.21 -0.49 -8.49 16 8 C 0.09 0.98 5.89 -3.71 -0.02 0.95 16 9 C -0.14 -1.28 6.08 -26.61 -0.16 -1.45 16 10 C -0.12 -1.12 5.88 -26.69 -0.16 -1.28 16 11 C -0.13 -1.64 5.04 -26.61 -0.13 -1.78 16 12 C 0.18 2.45 2.28 -67.59 -0.15 2.29 16 13 H 0.07 0.94 7.31 -51.93 -0.38 0.56 16 14 C -0.08 -1.41 0.24 -153.69 -0.04 -1.45 16 15 C 0.18 3.82 4.22 -4.04 -0.02 3.80 16 16 N -0.72 -18.83 4.75 -59.91 -0.28 -19.11 16 17 C -0.23 -6.54 9.99 -15.06 -0.15 -6.69 16 18 H 0.06 1.83 7.83 -52.49 -0.41 1.41 16 19 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 20 N -0.94 -29.02 13.06 55.49 0.72 -28.29 16 21 Si 0.90 23.21 29.55 -169.99 -5.02 18.19 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 25 C -0.13 -2.14 6.87 -25.83 -0.18 -2.32 16 26 C -0.17 -2.60 7.74 -25.83 -0.20 -2.80 16 27 C -0.07 -1.35 4.49 -25.92 -0.12 -1.46 16 28 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.11 1.56 7.96 -51.93 -0.41 1.15 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 1.03 4.61 -51.93 -0.24 0.79 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.89 7.36 -51.93 -0.38 0.51 16 38 H 0.08 1.10 6.59 -51.93 -0.34 0.76 16 39 H 0.00 0.00 7.01 -51.93 -0.36 -0.37 16 40 H 0.03 0.69 4.77 -52.37 -0.25 0.44 16 41 H 0.38 10.52 4.99 -40.82 -0.20 10.32 16 42 H 0.25 7.61 8.31 -40.82 -0.34 7.28 16 43 H 0.09 1.90 7.14 -51.93 -0.37 1.53 16 44 H 0.05 0.78 7.29 -51.93 -0.38 0.41 16 45 H 0.06 0.87 7.60 -51.93 -0.39 0.47 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.95 6.50 -51.93 -0.34 0.61 16 48 H 0.10 2.20 6.05 -51.93 -0.31 1.88 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -31.71 356.30 -8.10 -39.80 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.30 Total: 9.35 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.21 Total: -3.97 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.05 Total: -55.90 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.04 Total: -7.81 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.07 Total: -5.02 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.71 -8.10 -39.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105497287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.219 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds