Wall clock time and date at job start Tue Mar 31 2020 16:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39898 * 109.47551 * 2 1 4 4 F 1.39894 * 109.47151 * 239.99361 * 2 1 3 5 5 C 1.50711 * 109.46926 * 119.99814 * 2 1 3 6 6 O 1.21283 * 119.99704 * 12.48513 * 5 2 1 7 7 N 1.34771 * 119.99876 * 192.47789 * 5 2 1 8 8 C 1.46927 * 120.63438 * 5.72042 * 7 5 2 9 9 C 1.53187 * 108.77589 * 233.58325 * 8 7 5 10 10 C 1.53042 * 109.31189 * 305.36188 * 9 8 7 11 11 C 1.53039 * 109.53611 * 61.36626 * 10 9 8 12 12 C 1.46930 * 120.63056 * 185.68891 * 7 5 2 13 13 H 1.08991 * 109.70597 * 246.27939 * 12 7 5 14 14 C 1.53006 * 109.58266 * 6.63216 * 12 7 5 15 15 C 1.52999 * 112.84900 * 60.44877 * 14 12 7 16 16 N 1.46501 * 109.47074 * 187.00270 * 15 14 12 17 17 C 1.36938 * 119.99930 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00045 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99786 * 180.27641 * 17 16 15 20 20 N 1.31619 * 119.99793 * 359.73263 * 19 17 16 21 21 Si 1.86794 * 119.99981 * 179.72748 * 19 17 16 22 22 H 1.48505 * 109.47329 * 60.00090 * 21 19 17 23 23 H 1.48499 * 109.47203 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46988 * 300.00236 * 21 19 17 25 25 C 1.53781 * 113.61020 * 191.64308 * 14 12 7 26 26 C 1.53949 * 87.01808 * 89.23212 * 25 14 12 27 27 C 1.53775 * 87.11541 * 25.36098 * 26 25 14 28 28 H 1.09009 * 109.47198 * 300.00414 * 1 2 3 29 29 H 1.08999 * 109.46764 * 59.99815 * 1 2 3 30 30 H 1.08995 * 109.47358 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.58591 * 113.79111 * 8 7 5 32 32 H 1.09004 * 109.70185 * 353.44093 * 8 7 5 33 33 H 1.08997 * 109.49864 * 185.41086 * 9 8 7 34 34 H 1.09005 * 109.49827 * 65.31568 * 9 8 7 35 35 H 1.08998 * 109.45876 * 301.34366 * 10 9 8 36 36 H 1.08998 * 109.44527 * 181.37735 * 10 9 8 37 37 H 1.09002 * 109.49619 * 178.68143 * 11 10 9 38 38 H 1.09003 * 109.52841 * 58.60374 * 11 10 9 39 39 H 1.09002 * 109.47128 * 67.00962 * 15 14 12 40 40 H 1.08996 * 109.47538 * 307.00618 * 15 14 12 41 41 H 0.97002 * 119.99984 * 0.02562 * 16 15 14 42 42 H 0.96997 * 119.99876 * 179.97438 * 20 19 17 43 43 H 1.09002 * 113.60949 * 203.74901 * 25 14 12 44 44 H 1.09000 * 113.61531 * 334.65208 * 25 14 12 45 45 H 1.09001 * 113.53889 * 270.80890 * 26 25 14 46 46 H 1.09007 * 113.74416 * 139.94281 * 26 25 14 47 47 H 1.09001 * 113.61675 * 220.09187 * 27 26 25 48 48 H 1.09003 * 113.69147 * 89.19698 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0323 -0.7104 1.2306 6 8 1.2675 -1.3638 1.9082 7 7 3.3313 -0.6198 1.5779 8 6 4.2431 0.2662 0.8414 9 6 5.4537 -0.5490 0.3760 10 6 6.0901 -1.2436 1.5821 11 6 5.0774 -2.2010 2.2145 12 6 3.8625 -1.4045 2.7008 13 1 4.1630 -0.7355 3.5071 14 6 2.7870 -2.3677 3.2075 15 6 2.3248 -3.3583 2.1371 16 7 1.1864 -4.1288 2.6439 17 6 0.5998 -5.0825 1.8555 18 1 0.9766 -5.2670 0.8603 19 6 -0.4824 -5.8086 2.3335 20 7 -0.9414 -5.5840 3.5465 21 14 -1.2874 -7.1042 1.2553 22 1 -0.2876 -8.1430 0.8994 23 1 -2.4132 -7.7321 1.9927 24 1 -1.8018 -6.4672 0.0164 25 6 3.1370 -3.0304 4.5503 26 6 2.4538 -1.8294 5.2293 27 6 1.6301 -1.6687 3.9408 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.5752 1.0733 1.4944 32 1 3.7296 0.6845 -0.0243 33 1 6.1830 0.1151 -0.0879 34 1 5.1316 -1.2983 -0.3472 35 1 6.3896 -0.4952 2.3158 36 1 6.9663 -1.8046 1.2572 37 1 5.5388 -2.7126 3.0592 38 1 4.7587 -2.9351 1.4745 39 1 3.1423 -4.0365 1.8923 40 1 2.0249 -2.8129 1.2424 41 1 0.8478 -3.9629 3.5376 42 1 -1.6978 -6.0911 3.8804 43 1 2.6227 -3.9769 4.7172 44 1 4.2084 -3.0900 4.7417 45 1 3.1295 -0.9962 5.4224 46 1 1.8552 -2.0992 6.0994 47 1 1.4868 -0.6306 3.6408 48 1 0.7028 -2.2416 3.9394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105497287.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:08 Heat of formation + Delta-G solvation = -61.750524 kcal Electronic energy + Delta-G solvation = -32302.941764 eV Core-core repulsion = 28031.295853 eV Total energy + Delta-G solvation = -4271.645910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -50.40529 -48.29328 -42.57642 -39.27948 -38.53168 -35.87640 -33.92965 -32.98373 -32.54694 -32.11656 -28.56033 -27.30411 -26.64472 -25.38228 -24.85809 -23.88927 -23.15435 -21.87416 -20.83532 -19.46326 -19.19359 -18.92452 -18.17073 -17.92745 -17.13926 -16.83390 -16.52984 -16.26505 -15.91407 -15.61655 -15.42176 -15.14617 -15.06951 -14.71852 -14.62128 -14.52745 -14.36336 -14.25802 -14.06762 -13.59374 -13.36582 -13.26356 -13.17272 -13.11707 -12.90278 -12.85596 -12.69578 -12.44723 -12.15252 -12.05800 -11.92304 -11.80978 -11.66432 -11.46804 -11.07404 -10.94032 -10.78880 -10.72253 -10.11233 -9.53144 -8.79390 -7.90962 -5.15156 1.18448 1.42394 1.46082 1.52294 1.58463 2.54613 2.56882 2.86924 3.28526 3.40461 3.52503 3.62813 3.67884 3.83594 3.94703 4.02612 4.09401 4.15030 4.18031 4.33570 4.34125 4.46925 4.52237 4.54371 4.58054 4.69138 4.83299 4.86433 4.91058 4.96291 5.00019 5.04446 5.07280 5.08923 5.15403 5.22583 5.24531 5.26947 5.36684 5.44733 5.49810 5.56140 5.67385 5.82034 6.20588 6.32328 6.92810 7.37918 8.21585 8.45407 9.33059 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.005314 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.696199 B = 5268.031683 C = 6204.996747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.285 3.715 3 F -0.180 7.180 4 F -0.192 7.192 5 C 0.443 3.557 6 O -0.463 6.463 7 N -0.589 5.589 8 C 0.086 3.914 9 C -0.133 4.133 10 C -0.111 4.111 11 C -0.132 4.132 12 C 0.180 3.820 13 H 0.101 0.899 14 C -0.072 4.072 15 C 0.183 3.817 16 N -0.727 5.727 17 C -0.236 4.236 18 H 0.061 0.939 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.969 3.031 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.127 4.127 26 C -0.149 4.149 27 C -0.071 4.071 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.045 0.955 39 H -0.014 1.014 40 H 0.022 0.978 41 H 0.375 0.625 42 H 0.249 0.751 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.931 17.972 -4.418 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.245 3.755 3 F -0.161 7.161 4 F -0.174 7.174 5 C 0.226 3.774 6 O -0.336 6.336 7 N -0.323 5.323 8 C -0.035 4.035 9 C -0.171 4.171 10 C -0.149 4.149 11 C -0.171 4.171 12 C 0.078 3.922 13 H 0.118 0.882 14 C -0.073 4.073 15 C 0.056 3.944 16 N -0.370 5.370 17 C -0.368 4.368 18 H 0.079 0.921 19 C -0.268 4.268 20 N -0.621 5.621 21 Si 0.798 3.202 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.166 4.166 26 C -0.186 4.186 27 C -0.109 4.109 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.004 0.996 40 H 0.039 0.961 41 H 0.210 0.790 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.103 0.897 45 H 0.119 0.881 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.529 17.541 -4.235 23.167 hybrid contribution -1.026 -1.168 -0.514 1.637 sum 13.503 16.373 -4.749 21.747 Atomic orbital electron populations 1.22571 0.88299 1.05989 1.06633 1.21470 0.96214 0.75374 0.82454 1.92957 1.89716 1.36768 1.96677 1.93051 1.90628 1.81096 1.52582 1.20962 0.84378 0.84604 0.87429 1.91182 1.56653 1.37075 1.48702 1.48076 1.07512 1.43621 1.33059 1.22404 0.91106 0.92438 0.97532 1.21938 0.97124 0.99828 0.98215 1.21505 0.97355 0.98544 0.97451 1.22000 0.95193 0.98383 1.01485 1.21087 0.92127 0.91443 0.87572 0.88180 1.22065 0.95767 0.95447 0.93985 1.20796 0.87474 0.90562 0.95536 1.42501 1.35663 1.42216 1.16623 1.19503 1.09457 1.11024 0.96814 0.92088 1.25443 1.00078 1.03021 0.98213 1.69816 1.28614 1.45624 1.18034 0.85275 0.77794 0.79235 0.77873 1.20607 1.21825 1.20802 1.22901 1.00759 0.97392 0.95499 1.23150 0.99684 0.98334 0.97426 1.22611 0.96337 0.99075 0.92892 0.88306 0.87198 0.90295 0.88458 0.88889 0.87877 0.93295 0.89706 0.90437 0.89553 0.93575 0.99642 0.96068 0.79019 0.94191 0.92886 0.89749 0.88099 0.92632 0.92292 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.49 8.76 71.98 0.63 -3.86 16 2 C 0.28 7.65 1.77 29.85 0.05 7.70 16 3 F -0.18 -4.07 14.25 44.97 0.64 -3.43 16 4 F -0.19 -5.60 16.76 44.97 0.75 -4.85 16 5 C 0.44 13.81 5.30 87.66 0.46 14.27 16 6 O -0.46 -18.00 7.15 -3.04 -0.02 -18.02 16 7 N -0.59 -14.91 2.95 -795.01 -2.34 -17.26 16 8 C 0.09 1.55 5.89 86.36 0.51 2.06 16 9 C -0.13 -2.07 6.08 30.67 0.19 -1.88 16 10 C -0.11 -1.67 5.88 30.62 0.18 -1.49 16 11 C -0.13 -2.95 5.04 30.67 0.15 -2.80 16 12 C 0.18 4.57 2.28 44.98 0.10 4.68 16 13 H 0.10 2.10 7.31 -2.39 -0.02 2.08 16 14 C -0.07 -2.49 0.24 -51.65 -0.01 -2.50 16 15 C 0.18 8.24 4.22 86.38 0.36 8.61 16 16 N -0.73 -40.23 4.75 -343.45 -1.63 -41.86 16 17 C -0.24 -14.27 9.99 84.03 0.84 -13.43 16 18 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 19 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 20 N -0.97 -62.45 13.06 21.65 0.28 -62.17 16 21 Si 0.97 48.96 29.55 68.60 2.03 50.99 16 22 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 24 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 25 C -0.13 -4.26 6.87 31.18 0.21 -4.05 16 26 C -0.15 -4.48 7.74 31.18 0.24 -4.24 16 27 C -0.07 -2.64 4.49 31.12 0.14 -2.50 16 28 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.08 2.45 7.96 -2.39 -0.02 2.43 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.75 4.61 -2.38 -0.01 1.74 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.76 7.36 -2.39 -0.02 1.74 16 38 H 0.05 1.31 6.59 -2.39 -0.02 1.30 16 39 H -0.01 -0.66 7.01 -2.39 -0.02 -0.67 16 40 H 0.02 1.03 4.77 -9.40 -0.04 0.99 16 41 H 0.38 21.98 4.99 -92.71 -0.46 21.52 16 42 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.05 2.23 7.14 -2.39 -0.02 2.21 16 44 H 0.08 2.27 7.29 -2.39 -0.02 2.26 16 45 H 0.10 2.34 7.60 -2.39 -0.02 2.32 16 46 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.06 2.08 6.50 -2.39 -0.02 2.07 16 48 H 0.05 2.30 6.05 -2.39 -0.01 2.28 16 Total: -1.00 -72.83 356.30 4.72 -68.10 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.48 Total: 32.08 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 4.53 Total: -3.59 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -3.69 Total: -121.29 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.02 Total: -18.02 kcal Atomic # 9 Polarization: -9.66 SS G_CDS: 1.39 Total: -8.27 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.03 Total: 50.99 kcal Total: -72.83 4.72 -68.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105497287.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.350 kcal (2) G-P(sol) polarization free energy of solvation -72.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds