Wall clock time and date at job start Tue Mar 31 2020 16:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39900 * 109.47092 * 2 1 4 4 F 1.39907 * 109.46948 * 240.00016 * 2 1 3 5 5 C 1.50697 * 109.46955 * 120.00621 * 2 1 3 6 6 O 1.21278 * 120.00054 * 345.90456 * 5 2 1 7 7 N 1.34774 * 119.99800 * 165.91840 * 5 2 1 8 8 C 1.46919 * 120.63306 * 353.35177 * 7 5 2 9 9 C 1.53195 * 108.77988 * 126.37361 * 8 7 5 10 10 C 1.53033 * 109.31164 * 54.63241 * 9 8 7 11 11 C 1.53039 * 109.54071 * 298.63535 * 10 9 8 12 12 C 1.46930 * 120.62985 * 173.07415 * 7 5 2 13 13 H 1.08999 * 109.59041 * 113.84272 * 12 7 5 14 14 C 1.52996 * 109.58640 * 353.41545 * 12 7 5 15 15 C 1.53005 * 112.85280 * 303.40640 * 14 12 7 16 16 N 1.46504 * 109.46862 * 290.44649 * 15 14 12 17 17 C 1.36936 * 119.99705 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00070 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99674 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00178 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00004 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46944 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47063 * 120.00170 * 21 19 17 24 24 H 1.48498 * 109.47067 * 240.00161 * 21 19 17 25 25 C 1.53781 * 113.61657 * 172.20679 * 14 12 7 26 26 C 1.53954 * 87.02093 * 220.04615 * 25 14 12 27 27 C 1.53777 * 87.10875 * 25.36675 * 26 25 14 28 28 H 1.08996 * 109.46838 * 300.00174 * 1 2 3 29 29 H 1.09006 * 109.46741 * 59.99383 * 1 2 3 30 30 H 1.08996 * 109.47088 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.58806 * 246.15659 * 8 7 5 32 32 H 1.08999 * 109.58947 * 6.58566 * 8 7 5 33 33 H 1.09001 * 109.50266 * 174.58934 * 9 8 7 34 34 H 1.09009 * 109.49567 * 294.68315 * 9 8 7 35 35 H 1.09002 * 109.46346 * 58.66357 * 10 9 8 36 36 H 1.09005 * 109.46192 * 178.62004 * 10 9 8 37 37 H 1.09001 * 109.49922 * 181.31235 * 11 10 9 38 38 H 1.09000 * 109.50416 * 301.38646 * 11 10 9 39 39 H 1.09004 * 109.46554 * 50.43870 * 15 14 12 40 40 H 1.08992 * 109.47490 * 170.43902 * 15 14 12 41 41 H 0.96999 * 119.99914 * 359.95356 * 16 15 14 42 42 H 0.97006 * 119.99778 * 180.02562 * 20 19 17 43 43 H 1.09004 * 113.61316 * 334.57455 * 25 14 12 44 44 H 1.09000 * 113.60934 * 105.46895 * 25 14 12 45 45 H 1.08997 * 113.53832 * 270.80990 * 26 25 14 46 46 H 1.09005 * 113.73814 * 139.93958 * 26 25 14 47 47 H 1.09002 * 113.61061 * 220.08731 * 27 26 25 48 48 H 1.08997 * 113.69925 * 89.20028 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7105 1.2304 6 8 1.2740 -0.9447 2.1474 7 7 3.3243 -1.0855 1.3117 8 6 4.2200 -0.9406 0.1562 9 6 5.4573 -0.1471 0.5877 10 6 6.0987 -0.8285 1.7986 11 6 5.1052 -0.8448 2.9626 12 6 3.8653 -1.6412 2.5596 13 1 4.1389 -2.6851 2.4064 14 6 2.8121 -1.5408 3.6648 15 6 2.3205 -0.1093 3.8889 16 7 3.3944 0.6878 4.4869 17 6 3.1849 2.0092 4.7789 18 1 2.2283 2.4637 4.5681 19 6 4.2023 2.7643 5.3460 20 7 5.3681 2.2101 5.6034 21 14 3.9169 4.5670 5.7438 22 1 2.5327 4.9451 5.3614 23 1 4.1057 4.7885 7.1999 24 1 4.8852 5.4003 4.9867 25 6 3.2089 -2.2660 4.9616 26 6 1.7437 -2.7292 5.0560 27 6 1.6759 -2.5681 3.5282 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 4.5231 -1.9263 -0.1970 32 1 3.7037 -0.4070 -0.6418 33 1 6.1735 -0.1148 -0.2333 34 1 5.1635 0.8681 0.8549 35 1 6.3699 -1.8516 1.5382 36 1 6.9933 -0.2796 2.0926 37 1 5.5707 -1.3094 3.8318 38 1 4.8150 0.1768 3.2077 39 1 2.0313 0.3291 2.9338 40 1 1.4606 -0.1211 4.5585 41 1 4.2537 0.2795 4.6762 42 1 6.0789 2.7378 6.0001 43 1 3.9157 -3.0813 4.8072 44 1 3.5073 -1.5922 5.7648 45 1 1.1015 -2.0346 5.5973 46 1 1.6302 -3.7601 5.3917 47 1 0.7384 -2.1378 3.1757 48 1 1.9622 -3.4655 2.9798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105497288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:15 Heat of formation + Delta-G solvation = -26.741435 kcal Electronic energy + Delta-G solvation = -32636.571874 eV Core-core repulsion = 28366.444072 eV Total energy + Delta-G solvation = -4270.127802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.28414 -47.15695 -41.25889 -37.96404 -37.31379 -34.12477 -32.64558 -31.68141 -31.19705 -30.35950 -26.92898 -25.79424 -25.34393 -24.03865 -23.71881 -22.25278 -21.64859 -20.75065 -19.56423 -18.08239 -17.80079 -17.53154 -16.91318 -16.64779 -15.84490 -15.49657 -15.25557 -14.75653 -14.45337 -14.15344 -14.08269 -13.76712 -13.66643 -13.45873 -13.34294 -13.21063 -12.87285 -12.73194 -12.64260 -12.43751 -12.14454 -12.10495 -11.82260 -11.62056 -11.53811 -11.21182 -10.95619 -10.79567 -10.73426 -10.63444 -10.33476 -10.20127 -10.05922 -9.62588 -9.53163 -9.43495 -9.28798 -9.02023 -8.67499 -8.25367 -6.69541 -5.69506 -2.94293 2.35243 2.78716 3.47210 3.53694 3.55368 3.69810 3.94235 4.36264 4.59335 4.66889 4.91541 5.02393 5.11901 5.16739 5.25324 5.33312 5.35377 5.41305 5.52568 5.53869 5.60127 5.62222 5.66181 5.73397 5.81155 5.85191 6.03377 6.06344 6.14619 6.17213 6.26110 6.31724 6.37909 6.48802 6.51828 6.53318 6.72044 6.81052 6.90544 6.93902 7.13233 7.17149 7.26434 7.44380 7.80456 8.18888 8.52026 9.62340 10.23272 10.58244 11.53545 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.005883 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.871943 B = 4758.412692 C = 5221.147053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.275 3.725 3 F -0.180 7.180 4 F -0.192 7.192 5 C 0.463 3.537 6 O -0.461 6.461 7 N -0.577 5.577 8 C 0.088 3.912 9 C -0.135 4.135 10 C -0.114 4.114 11 C -0.162 4.162 12 C 0.168 3.832 13 H 0.064 0.936 14 C -0.066 4.066 15 C 0.175 3.825 16 N -0.734 5.734 17 C -0.229 4.229 18 H 0.067 0.933 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.901 3.099 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.113 4.113 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.130 0.870 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.386 0.614 42 H 0.252 0.748 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.102 0.898 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 -10.824 -12.820 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.235 3.765 3 F -0.161 7.161 4 F -0.173 7.173 5 C 0.248 3.752 6 O -0.336 6.336 7 N -0.309 5.309 8 C -0.035 4.035 9 C -0.173 4.173 10 C -0.152 4.152 11 C -0.200 4.200 12 C 0.067 3.933 13 H 0.082 0.918 14 C -0.067 4.067 15 C 0.049 3.951 16 N -0.382 5.382 17 C -0.361 4.361 18 H 0.085 0.915 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.733 3.267 22 H -0.207 1.207 23 H -0.221 1.221 24 H -0.221 1.221 25 C -0.173 4.173 26 C -0.182 4.182 27 C -0.151 4.151 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.147 0.853 39 H 0.064 0.936 40 H 0.034 0.966 41 H 0.225 0.775 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.072 0.928 47 H 0.119 0.881 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.223 -10.785 -12.335 17.197 hybrid contribution 0.604 0.985 0.141 1.164 sum -4.619 -9.800 -12.193 16.311 Atomic orbital electron populations 1.22574 0.89268 1.05951 1.05818 1.21648 0.95607 0.76546 0.82650 1.93112 1.90449 1.36031 1.96507 1.92913 1.89620 1.81021 1.53742 1.20537 0.83931 0.82168 0.88600 1.90954 1.56467 1.50945 1.35264 1.47913 1.08281 1.61043 1.13667 1.22262 0.91961 1.01014 0.88244 1.21917 0.96361 1.00599 0.98442 1.21461 0.98835 0.99563 0.95292 1.22548 0.93807 1.06378 0.97277 1.21252 0.94250 0.95645 0.82175 0.91847 1.22121 0.94398 0.97129 0.93043 1.21151 0.90669 0.86818 0.96461 1.43089 1.12897 1.08340 1.73873 1.19283 0.97534 0.86656 1.32620 0.91507 1.24661 0.96180 0.97922 1.02395 1.69658 1.03425 1.35282 1.50076 0.86183 0.77163 0.85741 0.77582 1.20700 1.22074 1.22068 1.22997 0.96269 0.99452 0.98617 1.22880 0.97421 0.99919 0.97966 1.23352 1.00849 0.96375 0.94479 0.88040 0.89764 0.88980 0.91284 0.88417 0.91241 0.90702 0.93092 0.91572 0.91100 0.85252 0.93639 0.96614 0.77545 0.93779 0.91301 0.90487 0.90446 0.92767 0.88060 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 8.78 37.16 0.33 -1.58 16 2 C 0.28 3.75 1.79 -27.88 -0.05 3.70 16 3 F -0.18 -2.86 16.88 2.25 0.04 -2.82 16 4 F -0.19 -2.39 14.07 2.25 0.03 -2.36 16 5 C 0.46 7.26 5.48 -10.99 -0.06 7.20 16 6 O -0.46 -7.68 6.77 5.56 0.04 -7.65 16 7 N -0.58 -8.81 2.95 -165.48 -0.49 -9.30 16 8 C 0.09 1.15 5.91 -3.71 -0.02 1.12 16 9 C -0.14 -1.87 6.08 -26.61 -0.16 -2.03 16 10 C -0.11 -1.68 5.88 -26.69 -0.16 -1.83 16 11 C -0.16 -2.86 3.97 -26.83 -0.11 -2.97 16 12 C 0.17 2.72 2.32 -67.82 -0.16 2.56 16 13 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 14 C -0.07 -1.15 0.07 -153.69 -0.01 -1.16 16 15 C 0.17 3.76 4.21 -4.04 -0.02 3.75 16 16 N -0.73 -18.49 3.73 -59.91 -0.22 -18.72 16 17 C -0.23 -6.49 9.99 -15.06 -0.15 -6.64 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 20 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 21 Si 0.90 22.84 29.55 -169.99 -5.02 17.82 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 C -0.14 -2.28 6.51 -25.83 -0.17 -2.45 16 26 C -0.14 -2.23 7.74 -25.83 -0.20 -2.43 16 27 C -0.11 -1.76 5.83 -25.92 -0.15 -1.91 16 28 H 0.10 1.16 7.95 -51.93 -0.41 0.75 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 1.25 4.56 -51.93 -0.24 1.01 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.27 7.88 -51.93 -0.41 0.86 16 38 H 0.13 2.90 4.89 -51.93 -0.25 2.64 16 39 H 0.05 1.03 4.37 -43.23 -0.19 0.84 16 40 H 0.02 0.37 7.33 -51.93 -0.38 -0.01 16 41 H 0.39 9.92 4.61 -40.82 -0.19 9.74 16 42 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 44 H 0.08 1.51 7.57 -51.93 -0.39 1.12 16 45 H 0.08 1.28 7.64 -51.93 -0.40 0.89 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.10 1.66 5.55 -43.60 -0.24 1.42 16 48 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -30.11 356.35 -8.01 -38.11 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -7.29 Total: 11.95 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.18 Total: -5.25 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.01 Total: -55.17 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.04 Total: -7.65 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.07 Total: -5.18 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.11 -8.01 -38.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105497288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.372 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds