Wall clock time and date at job start Tue Mar 31 2020 16:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39900 * 109.47092 * 2 1 4 4 F 1.39907 * 109.46948 * 240.00016 * 2 1 3 5 5 C 1.50697 * 109.46955 * 120.00621 * 2 1 3 6 6 O 1.21278 * 120.00054 * 345.90456 * 5 2 1 7 7 N 1.34774 * 119.99800 * 165.91840 * 5 2 1 8 8 C 1.46919 * 120.63306 * 353.35177 * 7 5 2 9 9 C 1.53195 * 108.77988 * 126.37361 * 8 7 5 10 10 C 1.53033 * 109.31164 * 54.63241 * 9 8 7 11 11 C 1.53039 * 109.54071 * 298.63535 * 10 9 8 12 12 C 1.46930 * 120.62985 * 173.07415 * 7 5 2 13 13 H 1.08999 * 109.59041 * 113.84272 * 12 7 5 14 14 C 1.52996 * 109.58640 * 353.41545 * 12 7 5 15 15 C 1.53005 * 112.85280 * 303.40640 * 14 12 7 16 16 N 1.46504 * 109.46862 * 290.44649 * 15 14 12 17 17 C 1.36936 * 119.99705 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00070 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99674 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00178 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00004 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46944 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47063 * 120.00170 * 21 19 17 24 24 H 1.48498 * 109.47067 * 240.00161 * 21 19 17 25 25 C 1.53781 * 113.61657 * 172.20679 * 14 12 7 26 26 C 1.53954 * 87.02093 * 220.04615 * 25 14 12 27 27 C 1.53777 * 87.10875 * 25.36675 * 26 25 14 28 28 H 1.08996 * 109.46838 * 300.00174 * 1 2 3 29 29 H 1.09006 * 109.46741 * 59.99383 * 1 2 3 30 30 H 1.08996 * 109.47088 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.58806 * 246.15659 * 8 7 5 32 32 H 1.08999 * 109.58947 * 6.58566 * 8 7 5 33 33 H 1.09001 * 109.50266 * 174.58934 * 9 8 7 34 34 H 1.09009 * 109.49567 * 294.68315 * 9 8 7 35 35 H 1.09002 * 109.46346 * 58.66357 * 10 9 8 36 36 H 1.09005 * 109.46192 * 178.62004 * 10 9 8 37 37 H 1.09001 * 109.49922 * 181.31235 * 11 10 9 38 38 H 1.09000 * 109.50416 * 301.38646 * 11 10 9 39 39 H 1.09004 * 109.46554 * 50.43870 * 15 14 12 40 40 H 1.08992 * 109.47490 * 170.43902 * 15 14 12 41 41 H 0.96999 * 119.99914 * 359.95356 * 16 15 14 42 42 H 0.97006 * 119.99778 * 180.02562 * 20 19 17 43 43 H 1.09004 * 113.61316 * 334.57455 * 25 14 12 44 44 H 1.09000 * 113.60934 * 105.46895 * 25 14 12 45 45 H 1.08997 * 113.53832 * 270.80990 * 26 25 14 46 46 H 1.09005 * 113.73814 * 139.93958 * 26 25 14 47 47 H 1.09002 * 113.61061 * 220.08731 * 27 26 25 48 48 H 1.08997 * 113.69925 * 89.20028 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7105 1.2304 6 8 1.2740 -0.9447 2.1474 7 7 3.3243 -1.0855 1.3117 8 6 4.2200 -0.9406 0.1562 9 6 5.4573 -0.1471 0.5877 10 6 6.0987 -0.8285 1.7986 11 6 5.1052 -0.8448 2.9626 12 6 3.8653 -1.6412 2.5596 13 1 4.1389 -2.6851 2.4064 14 6 2.8121 -1.5408 3.6648 15 6 2.3205 -0.1093 3.8889 16 7 3.3944 0.6878 4.4869 17 6 3.1849 2.0092 4.7789 18 1 2.2283 2.4637 4.5681 19 6 4.2023 2.7643 5.3460 20 7 5.3681 2.2101 5.6034 21 14 3.9169 4.5670 5.7438 22 1 2.5327 4.9451 5.3614 23 1 4.1057 4.7885 7.1999 24 1 4.8852 5.4003 4.9867 25 6 3.2089 -2.2660 4.9616 26 6 1.7437 -2.7292 5.0560 27 6 1.6759 -2.5681 3.5282 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 4.5231 -1.9263 -0.1970 32 1 3.7037 -0.4070 -0.6418 33 1 6.1735 -0.1148 -0.2333 34 1 5.1635 0.8681 0.8549 35 1 6.3699 -1.8516 1.5382 36 1 6.9933 -0.2796 2.0926 37 1 5.5707 -1.3094 3.8318 38 1 4.8150 0.1768 3.2077 39 1 2.0313 0.3291 2.9338 40 1 1.4606 -0.1211 4.5585 41 1 4.2537 0.2795 4.6762 42 1 6.0789 2.7378 6.0001 43 1 3.9157 -3.0813 4.8072 44 1 3.5073 -1.5922 5.7648 45 1 1.1015 -2.0346 5.5973 46 1 1.6302 -3.7601 5.3917 47 1 0.7384 -2.1378 3.1757 48 1 1.9622 -3.4655 2.9798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105497288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:13 Heat of formation + Delta-G solvation = -43.587487 kcal Electronic energy + Delta-G solvation = -32637.302374 eV Core-core repulsion = 28366.444072 eV Total energy + Delta-G solvation = -4270.858302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -50.37585 -48.27361 -42.56038 -39.26497 -38.52317 -36.09492 -33.89539 -33.10241 -32.50020 -31.94559 -28.42430 -27.29521 -26.62695 -25.53603 -24.94830 -23.98027 -22.93096 -21.96374 -20.80052 -19.57595 -19.07978 -18.87007 -18.32309 -18.02989 -17.05436 -16.93908 -16.64244 -16.37071 -15.88458 -15.62651 -15.32286 -15.08787 -15.00006 -14.68713 -14.62362 -14.52945 -14.23938 -14.20280 -13.79199 -13.57011 -13.35772 -13.22022 -13.19635 -13.03736 -12.91751 -12.84755 -12.73132 -12.38750 -12.26052 -12.08562 -11.90521 -11.85362 -11.50032 -11.23487 -11.07498 -10.94991 -10.75805 -10.63983 -10.16156 -9.53772 -8.76380 -7.92735 -5.16513 1.13769 1.42856 1.43101 1.53033 1.65387 2.55634 2.59989 2.91108 3.34327 3.39769 3.56410 3.68637 3.72874 3.84138 3.95724 4.03581 4.09007 4.11814 4.24617 4.31164 4.45813 4.51196 4.53826 4.56656 4.64752 4.70340 4.83008 4.86520 4.89423 4.93633 4.97612 4.99825 5.05341 5.14988 5.20857 5.25994 5.31316 5.33184 5.40106 5.51649 5.56862 5.62590 5.75586 5.79126 6.25348 6.31552 6.98096 7.38030 8.17977 8.44847 9.30301 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.010657 B = 0.005883 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.871943 B = 4758.412692 C = 5221.147053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.276 3.724 3 F -0.197 7.197 4 F -0.182 7.182 5 C 0.453 3.547 6 O -0.478 6.478 7 N -0.581 5.581 8 C 0.087 3.913 9 C -0.131 4.131 10 C -0.109 4.109 11 C -0.158 4.158 12 C 0.173 3.827 13 H 0.094 0.906 14 C -0.069 4.069 15 C 0.181 3.819 16 N -0.738 5.738 17 C -0.238 4.238 18 H 0.059 0.941 19 C -0.070 4.070 20 N -0.961 5.961 21 Si 0.962 3.038 22 H -0.274 1.274 23 H -0.293 1.293 24 H -0.292 1.292 25 C -0.135 4.135 26 C -0.139 4.139 27 C -0.097 4.097 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.040 0.960 40 H -0.008 1.008 41 H 0.383 0.617 42 H 0.249 0.751 43 H 0.095 0.905 44 H 0.038 0.962 45 H 0.056 0.944 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 -12.731 -14.775 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.236 3.764 3 F -0.179 7.179 4 F -0.163 7.163 5 C 0.238 3.762 6 O -0.355 6.355 7 N -0.313 5.313 8 C -0.035 4.035 9 C -0.169 4.169 10 C -0.147 4.147 11 C -0.197 4.197 12 C 0.071 3.929 13 H 0.111 0.889 14 C -0.070 4.070 15 C 0.056 3.944 16 N -0.385 5.385 17 C -0.370 4.370 18 H 0.077 0.923 19 C -0.262 4.262 20 N -0.613 5.613 21 Si 0.793 3.207 22 H -0.198 1.198 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.173 4.173 26 C -0.176 4.176 27 C -0.134 4.134 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.010 0.990 41 H 0.220 0.780 42 H 0.058 0.942 43 H 0.113 0.887 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.100 0.900 47 H 0.112 0.888 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.523 -12.700 -14.316 19.919 hybrid contribution 0.693 1.582 0.739 1.879 sum -4.830 -11.118 -13.577 18.201 Atomic orbital electron populations 1.22608 0.86910 1.07243 1.06345 1.21738 0.97095 0.75461 0.82090 1.93081 1.90847 1.37361 1.96565 1.92927 1.89680 1.80686 1.52999 1.20980 0.84054 0.81934 0.89218 1.90940 1.56931 1.51616 1.35987 1.48061 1.08553 1.60743 1.13914 1.22451 0.91022 1.02605 0.87398 1.21886 0.97556 0.98437 0.99043 1.21435 0.97465 1.01402 0.94397 1.22355 0.95521 1.03435 0.98382 1.21185 0.92807 0.96774 0.82153 0.88874 1.22020 0.95969 0.94879 0.94143 1.21191 0.88960 0.89289 0.94929 1.43232 1.13690 1.07699 1.73897 1.19539 0.97169 0.88264 1.32058 0.92263 1.25363 0.96123 1.01720 1.03011 1.69798 1.03987 1.36451 1.51020 0.85227 0.77270 0.81192 0.77061 1.19839 1.21985 1.21969 1.23009 0.97812 0.99450 0.97040 1.22823 0.95757 1.00927 0.98087 1.23240 0.99534 0.96176 0.94433 0.89210 0.87529 0.87328 0.88045 0.88114 0.88168 0.94596 0.89816 0.92788 0.92068 0.90199 0.94242 0.99034 0.77954 0.94162 0.88689 0.94306 0.92500 0.89960 0.88835 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 8.78 71.98 0.63 -2.79 16 2 C 0.28 7.14 1.79 29.85 0.05 7.19 16 3 F -0.20 -6.24 16.88 44.97 0.76 -5.48 16 4 F -0.18 -4.08 14.07 44.97 0.63 -3.45 16 5 C 0.45 13.72 5.48 87.66 0.48 14.20 16 6 O -0.48 -15.69 6.77 -3.02 -0.02 -15.71 16 7 N -0.58 -16.78 2.95 -795.83 -2.35 -19.13 16 8 C 0.09 2.04 5.91 86.36 0.51 2.55 16 9 C -0.13 -3.44 6.08 30.67 0.19 -3.25 16 10 C -0.11 -3.08 5.88 30.62 0.18 -2.90 16 11 C -0.16 -5.61 3.97 30.53 0.12 -5.49 16 12 C 0.17 5.30 2.32 44.83 0.10 5.40 16 13 H 0.09 2.37 8.13 -2.39 -0.02 2.36 16 14 C -0.07 -2.39 0.07 -51.65 0.00 -2.39 16 15 C 0.18 8.10 4.21 86.38 0.36 8.46 16 16 N -0.74 -39.01 3.73 -343.45 -1.28 -40.29 16 17 C -0.24 -14.01 9.99 84.03 0.84 -13.17 16 18 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 19 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 20 N -0.96 -59.28 13.06 21.65 0.28 -59.00 16 21 Si 0.96 48.14 29.55 68.60 2.03 50.17 16 22 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 24 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 25 C -0.14 -4.50 6.51 31.18 0.20 -4.29 16 26 C -0.14 -4.12 7.74 31.18 0.24 -3.88 16 27 C -0.10 -2.81 5.83 31.12 0.18 -2.63 16 28 H 0.09 2.00 7.95 -2.39 -0.02 1.98 16 29 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.10 2.33 4.56 -2.39 -0.01 2.32 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.06 2.22 7.88 -2.39 -0.02 2.21 16 38 H 0.08 3.73 4.89 -2.39 -0.01 3.72 16 39 H 0.04 1.85 4.37 -26.40 -0.12 1.74 16 40 H -0.01 -0.40 7.33 -2.39 -0.02 -0.42 16 41 H 0.38 20.71 4.61 -92.71 -0.43 20.29 16 42 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 43 H 0.09 2.64 8.10 -2.38 -0.02 2.63 16 44 H 0.04 1.58 7.57 -2.39 -0.02 1.56 16 45 H 0.06 1.91 7.64 -2.39 -0.02 1.89 16 46 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.09 2.95 5.55 -32.36 -0.18 2.77 16 48 H 0.08 2.06 8.09 -2.39 -0.02 2.04 16 Total: -1.00 -68.11 356.35 4.89 -63.21 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: 0.28 Total: 36.32 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 4.56 Total: -6.64 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -3.34 Total: -118.41 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.02 Total: -15.71 kcal Atomic # 9 Polarization: -10.33 SS G_CDS: 1.39 Total: -8.93 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -68.11 4.89 -63.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105497288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.626 kcal (2) G-P(sol) polarization free energy of solvation -68.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds