Wall clock time and date at job start Tue Mar 31 2020 17:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.77730 * 2 1 4 4 C 1.54327 * 110.72142 * 236.76367 * 2 1 3 5 5 N 1.47013 * 107.27248 * 219.44454 * 4 2 1 6 6 C 1.34779 * 125.65273 * 178.97627 * 5 4 2 7 7 O 1.21279 * 120.00481 * 174.95473 * 6 5 4 8 8 C 1.50704 * 119.99400 * 354.95574 * 6 5 4 9 9 H 1.08994 * 109.47454 * 334.99288 * 8 6 5 10 10 C 1.52999 * 109.46797 * 94.99924 * 8 6 5 11 11 C 1.53003 * 109.46828 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.47124 * 299.99938 * 11 10 8 13 13 C 1.52995 * 109.46845 * 59.99934 * 12 11 10 14 14 C 1.52995 * 109.47275 * 299.99693 * 13 12 11 15 15 F 1.39897 * 109.47378 * 300.00262 * 14 13 12 16 16 F 1.39901 * 109.47081 * 180.02562 * 14 13 12 17 17 C 1.47429 * 108.70413 * 358.93898 * 5 4 2 18 18 C 1.54914 * 104.82883 * 24.13066 * 17 5 4 19 19 H 1.08999 * 111.00613 * 81.06511 * 18 17 5 20 20 C 1.53001 * 110.99960 * 204.91686 * 18 17 5 21 21 N 1.46496 * 109.47169 * 287.19395 * 20 18 17 22 22 C 1.36935 * 120.00054 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00255 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00350 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00673 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 119.99796 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47038 * 89.99987 * 26 24 22 28 28 H 1.48500 * 109.47102 * 209.99941 * 26 24 22 29 29 H 1.48503 * 109.46886 * 330.00256 * 26 24 22 30 30 H 1.08999 * 109.47276 * 181.78142 * 1 2 3 31 31 H 1.08997 * 109.47142 * 301.78550 * 1 2 3 32 32 H 1.09009 * 109.47078 * 61.78257 * 1 2 3 33 33 H 1.09004 * 109.87858 * 338.86525 * 4 2 1 34 34 H 1.08999 * 109.87991 * 99.86680 * 4 2 1 35 35 H 1.09000 * 109.47288 * 299.99191 * 10 8 6 36 36 H 1.09003 * 109.47345 * 59.99993 * 10 8 6 37 37 H 1.09000 * 109.47381 * 59.99912 * 11 10 8 38 38 H 1.08998 * 109.47385 * 179.97438 * 11 10 8 39 39 H 1.09001 * 109.46743 * 179.97438 * 12 11 10 40 40 H 1.08994 * 109.46749 * 299.99839 * 12 11 10 41 41 H 1.08994 * 109.47524 * 60.00380 * 13 12 11 42 42 H 1.09008 * 109.46584 * 180.02562 * 13 12 11 43 43 H 1.08997 * 110.36581 * 142.96531 * 17 5 4 44 44 H 1.08996 * 110.36823 * 265.18116 * 17 5 4 45 45 H 1.09000 * 109.47656 * 47.19965 * 20 18 17 46 46 H 1.09002 * 109.46697 * 167.19717 * 20 18 17 47 47 H 0.97002 * 119.99940 * 0.02562 * 21 20 18 48 48 H 0.96990 * 120.00480 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0761 -0.7911 -1.2073 5 7 3.2445 -1.5507 -0.7391 6 6 3.9923 -2.3835 -1.4898 7 8 4.9908 -2.8893 -1.0229 8 6 3.5878 -2.6862 -2.9097 9 1 2.5134 -2.5399 -3.0204 10 6 4.3312 -1.7482 -3.8627 11 6 3.9210 -2.0560 -5.3042 12 6 4.2755 -3.5068 -5.6368 13 6 3.5320 -4.4446 -4.6836 14 6 3.9423 -4.1370 -3.2422 15 9 5.3213 -4.3245 -3.0997 16 9 3.2629 -4.9950 -2.3707 17 6 3.4633 -1.2498 0.6875 18 6 2.0789 -0.7955 1.2137 19 1 1.4451 -1.6536 1.4374 20 6 2.2278 0.1079 2.4395 21 7 2.6328 -0.6981 3.5939 22 6 2.8281 -0.1015 4.8108 23 1 2.6839 0.9633 4.9197 24 6 3.2124 -0.8651 5.9045 25 7 3.4006 -0.2916 7.0742 26 14 3.4625 -2.7067 5.7163 27 1 4.8741 -2.9791 5.3442 28 1 3.1500 -3.3826 7.0011 29 1 2.5622 -3.2225 4.6538 30 1 -0.3634 -1.0271 0.0319 31 1 -0.3633 0.5413 0.8735 32 1 -0.3634 0.4859 -0.9056 33 1 1.3129 -1.4757 -1.5777 34 1 2.3715 -0.1024 -1.9988 35 1 4.0790 -0.7147 -3.6256 36 1 5.4057 -1.8947 -3.7520 37 1 2.8465 -1.9099 -5.4153 38 1 4.4502 -1.3875 -5.9833 39 1 3.9827 -3.7260 -6.6636 40 1 5.3498 -3.6528 -5.5257 41 1 2.4576 -4.2986 -4.7946 42 1 3.7850 -5.4782 -4.9203 43 1 3.7960 -2.1426 1.2168 44 1 4.1946 -0.4492 0.7985 45 1 2.9853 0.8664 2.2422 46 1 1.2748 0.5927 2.6514 47 1 2.7627 -1.6544 3.4961 48 1 3.6694 -0.8251 7.8383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106473639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:36 Heat of formation + Delta-G solvation = -139.216161 kcal Electronic energy + Delta-G solvation = -30006.354289 eV Core-core repulsion = 25731.349216 eV Total energy + Delta-G solvation = -4275.005073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.10313 -47.05594 -40.42626 -38.46938 -37.39453 -34.88167 -33.06668 -31.91752 -31.51001 -30.47371 -29.47183 -26.58102 -25.94490 -24.05948 -23.20918 -22.64030 -21.14735 -20.61194 -20.15283 -19.52259 -17.77329 -17.54945 -17.34390 -16.95599 -16.38420 -15.91245 -15.58686 -14.78193 -14.65411 -14.55771 -14.25616 -14.14029 -13.92528 -13.83836 -13.55622 -13.38873 -13.34333 -13.14245 -12.87568 -12.73718 -12.52334 -12.43697 -12.38685 -12.19789 -12.06109 -11.82075 -11.52171 -11.47242 -11.34248 -11.22576 -10.95256 -10.73852 -10.69689 -10.56732 -10.36737 -10.10705 -9.79243 -9.57830 -8.89243 -8.70499 -7.23605 -5.76085 -3.12095 2.40360 2.73559 3.41105 3.43395 3.45082 3.49478 3.62373 3.92996 3.94320 4.31207 4.37386 4.46095 4.50298 4.60143 4.61327 4.62552 4.66937 4.77938 4.82458 5.07136 5.12209 5.15242 5.25317 5.34732 5.35817 5.36619 5.40639 5.44794 5.53298 5.56042 5.59263 5.60848 5.64624 5.73470 5.80423 5.87424 5.97445 6.07333 6.09753 6.16719 6.29468 6.58831 6.69207 7.39527 7.98777 8.01689 8.42728 9.21268 9.93948 10.12829 11.42178 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.003170 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.713456 B = 8830.462252 C = 9804.785649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.090 0.910 4 C 0.102 3.898 5 N -0.615 5.615 6 C 0.529 3.471 7 O -0.519 6.519 8 C -0.146 4.146 9 H 0.115 0.885 10 C -0.108 4.108 11 C -0.121 4.121 12 C -0.122 4.122 13 C -0.157 4.157 14 C 0.308 3.692 15 F -0.182 7.182 16 F -0.198 7.198 17 C 0.113 3.887 18 C -0.106 4.106 19 H 0.086 0.914 20 C 0.171 3.829 21 N -0.756 5.756 22 C -0.246 4.246 23 H 0.091 0.909 24 C 0.006 3.994 25 N -0.934 5.934 26 Si 0.882 3.118 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.030 0.970 46 H 0.033 0.967 47 H 0.361 0.639 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 -2.914 -31.368 31.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.109 0.891 4 C -0.021 4.021 5 N -0.349 5.349 6 C 0.316 3.684 7 O -0.394 6.394 8 C -0.168 4.168 9 H 0.133 0.867 10 C -0.146 4.146 11 C -0.158 4.158 12 C -0.159 4.159 13 C -0.195 4.195 14 C 0.271 3.729 15 F -0.163 7.163 16 F -0.179 7.179 17 C -0.008 4.008 18 C -0.126 4.126 19 H 0.104 0.896 20 C 0.043 3.957 21 N -0.402 5.402 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.582 5.582 26 Si 0.712 3.288 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.048 0.952 46 H 0.051 0.949 47 H 0.194 0.806 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.075 -3.095 -30.945 31.365 hybrid contribution 0.155 -1.457 0.250 1.486 sum -3.919 -4.552 -30.695 31.278 Atomic orbital electron populations 1.21754 0.93539 1.02269 1.02257 1.22206 0.96507 0.99607 0.93240 0.89144 1.22200 0.87644 0.94605 0.97619 1.48510 1.30089 1.44323 1.12013 1.19760 0.83232 0.78832 0.86579 1.90802 1.24778 1.50920 1.72895 1.22387 1.04290 0.95195 0.94953 0.86687 1.21489 1.01328 0.98501 0.93304 1.21611 1.02040 0.96580 0.95613 1.21556 1.01319 0.94067 0.98970 1.22554 1.03028 1.02612 0.91352 1.20676 0.74993 0.87638 0.89609 1.93054 1.30848 1.95838 1.96516 1.93037 1.79862 1.72635 1.72387 1.22391 0.97731 1.01649 0.79071 1.22742 0.95296 0.99393 0.95122 0.89594 1.20554 0.97958 0.92522 0.84655 1.42726 1.84335 1.06212 1.06938 1.19028 1.39072 0.94632 0.84794 0.89169 1.24659 1.01431 0.97425 0.95443 1.69695 1.53532 1.34850 1.00076 0.86589 0.78309 0.87028 0.76860 1.20894 1.21655 1.20365 0.92448 0.91401 0.92545 0.91389 0.91372 0.90006 0.89894 0.91136 0.90406 0.90203 0.90570 0.88671 0.89022 0.90317 0.90646 0.95192 0.94886 0.80623 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.13 37.16 0.34 -0.90 16 2 C -0.10 -1.00 3.02 -88.78 -0.27 -1.26 16 3 H 0.09 0.89 8.04 -51.93 -0.42 0.48 16 4 C 0.10 0.96 5.80 -3.07 -0.02 0.94 16 5 N -0.62 -8.22 3.33 -170.52 -0.57 -8.78 16 6 C 0.53 7.73 6.58 -10.98 -0.07 7.66 16 7 O -0.52 -10.01 15.66 5.56 0.09 -9.92 16 8 C -0.15 -1.47 1.82 -91.77 -0.17 -1.63 16 9 H 0.12 0.86 6.91 -51.93 -0.36 0.50 16 10 C -0.11 -0.83 5.06 -26.73 -0.14 -0.96 16 11 C -0.12 -0.59 5.92 -26.73 -0.16 -0.74 16 12 C -0.12 -0.65 5.80 -26.73 -0.16 -0.80 16 13 C -0.16 -1.07 5.45 -26.74 -0.15 -1.22 16 14 C 0.31 3.46 1.51 -26.73 -0.04 3.42 16 15 F -0.18 -2.59 14.61 2.25 0.03 -2.56 16 16 F -0.20 -2.76 16.77 2.25 0.04 -2.72 16 17 C 0.11 1.78 6.30 -2.52 -0.02 1.77 16 18 C -0.11 -1.54 2.50 -88.47 -0.22 -1.76 16 19 H 0.09 1.30 8.04 -51.93 -0.42 0.89 16 20 C 0.17 3.13 5.72 -4.04 -0.02 3.10 16 21 N -0.76 -17.95 5.35 -59.91 -0.32 -18.27 16 22 C -0.25 -6.99 10.47 -15.06 -0.16 -7.15 16 23 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 25 N -0.93 -29.70 13.97 55.49 0.78 -28.92 16 26 Si 0.88 22.82 27.74 -169.99 -4.71 18.11 16 27 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 29 H -0.28 -6.79 6.52 56.52 0.37 -6.42 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.07 0.54 7.31 -51.93 -0.38 0.16 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.79 7.80 -51.93 -0.41 0.38 16 37 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.49 7.80 -51.93 -0.41 0.08 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 43 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 44 H 0.08 1.22 7.91 -51.93 -0.41 0.81 16 45 H 0.03 0.56 7.97 -51.93 -0.41 0.14 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.36 8.54 5.53 -40.82 -0.23 8.32 16 48 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -35.90 380.05 -8.37 -44.27 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.09 Total: 2.51 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.33 Total: 0.55 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.11 Total: -55.98 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.07 Total: -5.28 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.71 Total: 18.11 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.90 -8.37 -44.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106473639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.941 kcal (2) G-P(sol) polarization free energy of solvation -35.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds