Wall clock time and date at job start Tue Mar 31 2020 17:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.77730 * 2 1 4 4 C 1.54327 * 110.72142 * 236.76367 * 2 1 3 5 5 N 1.47013 * 107.27248 * 219.44454 * 4 2 1 6 6 C 1.34779 * 125.65273 * 178.97627 * 5 4 2 7 7 O 1.21279 * 120.00481 * 174.95473 * 6 5 4 8 8 C 1.50704 * 119.99400 * 354.95574 * 6 5 4 9 9 H 1.08994 * 109.47454 * 334.99288 * 8 6 5 10 10 C 1.52999 * 109.46797 * 94.99924 * 8 6 5 11 11 C 1.53003 * 109.46828 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.47124 * 299.99938 * 11 10 8 13 13 C 1.52995 * 109.46845 * 59.99934 * 12 11 10 14 14 C 1.52995 * 109.47275 * 299.99693 * 13 12 11 15 15 F 1.39897 * 109.47378 * 300.00262 * 14 13 12 16 16 F 1.39901 * 109.47081 * 180.02562 * 14 13 12 17 17 C 1.47429 * 108.70413 * 358.93898 * 5 4 2 18 18 C 1.54914 * 104.82883 * 24.13066 * 17 5 4 19 19 H 1.08999 * 111.00613 * 81.06511 * 18 17 5 20 20 C 1.53001 * 110.99960 * 204.91686 * 18 17 5 21 21 N 1.46496 * 109.47169 * 287.19395 * 20 18 17 22 22 C 1.36935 * 120.00054 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00255 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00350 * 180.02562 * 22 21 20 25 25 N 1.31621 * 120.00673 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 119.99796 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47038 * 89.99987 * 26 24 22 28 28 H 1.48500 * 109.47102 * 209.99941 * 26 24 22 29 29 H 1.48503 * 109.46886 * 330.00256 * 26 24 22 30 30 H 1.08999 * 109.47276 * 181.78142 * 1 2 3 31 31 H 1.08997 * 109.47142 * 301.78550 * 1 2 3 32 32 H 1.09009 * 109.47078 * 61.78257 * 1 2 3 33 33 H 1.09004 * 109.87858 * 338.86525 * 4 2 1 34 34 H 1.08999 * 109.87991 * 99.86680 * 4 2 1 35 35 H 1.09000 * 109.47288 * 299.99191 * 10 8 6 36 36 H 1.09003 * 109.47345 * 59.99993 * 10 8 6 37 37 H 1.09000 * 109.47381 * 59.99912 * 11 10 8 38 38 H 1.08998 * 109.47385 * 179.97438 * 11 10 8 39 39 H 1.09001 * 109.46743 * 179.97438 * 12 11 10 40 40 H 1.08994 * 109.46749 * 299.99839 * 12 11 10 41 41 H 1.08994 * 109.47524 * 60.00380 * 13 12 11 42 42 H 1.09008 * 109.46584 * 180.02562 * 13 12 11 43 43 H 1.08997 * 110.36581 * 142.96531 * 17 5 4 44 44 H 1.08996 * 110.36823 * 265.18116 * 17 5 4 45 45 H 1.09000 * 109.47656 * 47.19965 * 20 18 17 46 46 H 1.09002 * 109.46697 * 167.19717 * 20 18 17 47 47 H 0.97002 * 119.99940 * 0.02562 * 21 20 18 48 48 H 0.96990 * 120.00480 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0761 -0.7911 -1.2073 5 7 3.2445 -1.5507 -0.7391 6 6 3.9923 -2.3835 -1.4898 7 8 4.9908 -2.8893 -1.0229 8 6 3.5878 -2.6862 -2.9097 9 1 2.5134 -2.5399 -3.0204 10 6 4.3312 -1.7482 -3.8627 11 6 3.9210 -2.0560 -5.3042 12 6 4.2755 -3.5068 -5.6368 13 6 3.5320 -4.4446 -4.6836 14 6 3.9423 -4.1370 -3.2422 15 9 5.3213 -4.3245 -3.0997 16 9 3.2629 -4.9950 -2.3707 17 6 3.4633 -1.2498 0.6875 18 6 2.0789 -0.7955 1.2137 19 1 1.4451 -1.6536 1.4374 20 6 2.2278 0.1079 2.4395 21 7 2.6328 -0.6981 3.5939 22 6 2.8281 -0.1015 4.8108 23 1 2.6839 0.9633 4.9197 24 6 3.2124 -0.8651 5.9045 25 7 3.4006 -0.2916 7.0742 26 14 3.4625 -2.7067 5.7163 27 1 4.8741 -2.9791 5.3442 28 1 3.1500 -3.3826 7.0011 29 1 2.5622 -3.2225 4.6538 30 1 -0.3634 -1.0271 0.0319 31 1 -0.3633 0.5413 0.8735 32 1 -0.3634 0.4859 -0.9056 33 1 1.3129 -1.4757 -1.5777 34 1 2.3715 -0.1024 -1.9988 35 1 4.0790 -0.7147 -3.6256 36 1 5.4057 -1.8947 -3.7520 37 1 2.8465 -1.9099 -5.4153 38 1 4.4502 -1.3875 -5.9833 39 1 3.9827 -3.7260 -6.6636 40 1 5.3498 -3.6528 -5.5257 41 1 2.4576 -4.2986 -4.7946 42 1 3.7850 -5.4782 -4.9203 43 1 3.7960 -2.1426 1.2168 44 1 4.1946 -0.4492 0.7985 45 1 2.9853 0.8664 2.2422 46 1 1.2748 0.5927 2.6514 47 1 2.7627 -1.6544 3.4961 48 1 3.6694 -0.8251 7.8383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106473639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:34 Heat of formation + Delta-G solvation = -162.957920 kcal Electronic energy + Delta-G solvation = -30007.383809 eV Core-core repulsion = 25731.349216 eV Total energy + Delta-G solvation = -4276.034592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -50.02798 -48.02142 -41.47519 -39.45341 -38.17609 -36.65842 -34.36970 -33.33002 -32.58705 -31.14419 -30.79779 -27.55562 -27.26377 -25.10724 -24.22828 -23.72775 -22.47473 -21.41109 -21.08946 -20.51061 -19.65648 -18.46680 -18.36546 -17.91633 -17.28049 -16.97732 -16.63139 -16.48335 -15.82805 -15.55247 -15.32252 -15.19927 -14.95775 -14.78157 -14.70611 -14.52590 -14.31977 -14.19442 -14.05020 -13.74735 -13.59645 -13.53927 -13.42526 -13.22565 -13.08265 -12.89507 -12.71626 -12.54139 -12.41442 -12.17917 -11.92057 -11.88589 -11.83248 -11.62538 -11.60373 -11.46976 -11.36024 -11.03681 -10.81875 -9.78874 -9.33619 -8.07526 -5.39919 1.31550 1.34309 1.35315 1.40282 1.73695 2.42249 2.66363 2.93590 3.13712 3.24509 3.27268 3.38068 3.49897 3.65732 3.77846 3.88389 3.93946 3.98773 4.05915 4.18525 4.20740 4.26649 4.33293 4.42790 4.49523 4.53397 4.63930 4.70061 4.77320 4.77972 4.84976 4.85372 4.97701 5.00656 5.01723 5.09732 5.16282 5.17218 5.20212 5.23649 5.36729 5.42277 5.51735 5.72260 6.17150 6.36809 6.93759 7.03278 7.80266 7.96621 9.14031 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.003170 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.713456 B = 8830.462252 C = 9804.785649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.099 0.901 4 C 0.098 3.902 5 N -0.613 5.613 6 C 0.518 3.482 7 O -0.582 6.582 8 C -0.135 4.135 9 H 0.152 0.848 10 C -0.106 4.106 11 C -0.114 4.114 12 C -0.122 4.122 13 C -0.149 4.149 14 C 0.285 3.715 15 F -0.208 7.208 16 F -0.220 7.220 17 C 0.112 3.888 18 C -0.097 4.097 19 H 0.082 0.918 20 C 0.168 3.832 21 N -0.762 5.762 22 C -0.230 4.230 23 H 0.064 0.936 24 C -0.059 4.059 25 N -0.981 5.981 26 Si 0.945 3.055 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.256 1.256 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.056 0.944 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.042 0.958 44 H 0.063 0.937 45 H 0.029 0.971 46 H 0.042 0.958 47 H 0.362 0.638 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 -2.711 -35.695 36.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 H 0.117 0.883 4 C -0.023 4.023 5 N -0.346 5.346 6 C 0.307 3.693 7 O -0.461 6.461 8 C -0.157 4.157 9 H 0.169 0.831 10 C -0.144 4.144 11 C -0.151 4.151 12 C -0.159 4.159 13 C -0.186 4.186 14 C 0.249 3.751 15 F -0.190 7.190 16 F -0.201 7.201 17 C -0.011 4.011 18 C -0.116 4.116 19 H 0.100 0.900 20 C 0.042 3.958 21 N -0.407 5.407 22 C -0.361 4.361 23 H 0.082 0.918 24 C -0.251 4.251 25 N -0.632 5.632 26 Si 0.773 3.227 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.181 1.181 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.142 0.858 42 H 0.110 0.890 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.194 0.806 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.693 -2.866 -35.345 36.087 hybrid contribution 0.972 -1.411 1.602 2.346 sum -5.721 -4.278 -33.743 34.491 Atomic orbital electron populations 1.21748 0.91809 1.02583 1.03324 1.22222 0.97796 0.99429 0.91067 0.88310 1.22543 0.86629 0.95293 0.97795 1.48610 1.30963 1.44271 1.10738 1.20724 0.82387 0.77907 0.88311 1.90767 1.27597 1.53230 1.74514 1.22503 1.06513 0.94853 0.91831 0.83059 1.21558 0.99348 0.98698 0.94824 1.21633 1.03918 0.96196 0.93316 1.21612 1.00041 0.94286 0.99959 1.22621 1.04837 1.03102 0.88081 1.21527 0.73651 0.88125 0.91819 1.92997 1.33150 1.96014 1.96791 1.92987 1.80117 1.73464 1.73537 1.22184 0.98259 0.99616 0.81014 1.22572 0.94718 0.99177 0.95154 0.89994 1.20741 0.97809 0.92795 0.84478 1.42820 1.84312 1.06671 1.06944 1.19062 1.36909 0.93621 0.86519 0.91800 1.25390 1.02450 1.01940 0.95288 1.69849 1.55749 1.36552 1.01013 0.85565 0.78186 0.81753 0.77217 1.21327 1.21662 1.18134 0.92375 0.92600 0.89420 0.88693 0.87815 0.88382 0.92845 0.88318 0.88979 0.87457 0.92554 0.85759 0.89045 0.93939 0.91837 0.95314 0.94054 0.80560 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.13 71.98 0.66 -1.18 16 2 C -0.09 -1.48 3.02 -9.61 -0.03 -1.51 16 3 H 0.10 1.59 8.04 -2.39 -0.02 1.57 16 4 C 0.10 1.41 5.80 86.73 0.50 1.91 16 5 N -0.61 -15.48 3.33 -811.79 -2.70 -18.18 16 6 C 0.52 14.90 6.58 87.66 0.58 15.48 16 7 O -0.58 -23.59 15.66 -3.02 -0.05 -23.64 16 8 C -0.14 -2.40 1.82 -11.54 -0.02 -2.42 16 9 H 0.15 1.50 6.91 -2.39 -0.02 1.48 16 10 C -0.11 -1.33 5.06 30.59 0.15 -1.18 16 11 C -0.11 -0.59 5.92 30.60 0.18 -0.41 16 12 C -0.12 -0.89 5.80 30.59 0.18 -0.71 16 13 C -0.15 -1.60 5.45 30.59 0.17 -1.43 16 14 C 0.29 6.14 1.51 30.59 0.05 6.18 16 15 F -0.21 -6.20 14.61 44.97 0.66 -5.55 16 16 F -0.22 -6.06 16.77 44.97 0.75 -5.31 16 17 C 0.11 3.57 6.30 86.86 0.55 4.12 16 18 C -0.10 -2.68 2.50 -9.40 -0.02 -2.71 16 19 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 20 C 0.17 6.08 5.72 86.38 0.49 6.57 16 21 N -0.76 -36.37 5.35 -343.46 -1.84 -38.21 16 22 C -0.23 -13.37 10.47 84.03 0.88 -12.49 16 23 H 0.06 3.99 8.06 -2.91 -0.02 3.97 16 24 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 25 N -0.98 -64.22 13.97 21.65 0.30 -63.91 16 26 Si 0.94 48.13 27.74 68.60 1.90 50.03 16 27 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 28 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 29 H -0.26 -12.01 6.52 99.48 0.65 -11.36 16 30 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 0.68 8.14 -2.38 -0.02 0.67 16 33 H 0.09 0.94 7.31 -2.38 -0.02 0.92 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 0.99 7.80 -2.39 -0.02 0.98 16 37 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.06 0.65 7.80 -2.39 -0.02 0.63 16 41 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.04 1.63 8.09 -2.39 -0.02 1.61 16 44 H 0.06 2.13 7.91 -2.39 -0.02 2.11 16 45 H 0.03 1.06 7.97 -2.39 -0.02 1.05 16 46 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.36 17.11 5.53 -92.71 -0.51 16.60 16 48 H 0.26 16.13 8.31 -92.72 -0.77 15.36 16 Total: -1.00 -84.96 380.05 4.18 -80.78 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.37 Total: 16.87 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 4.78 Total: 7.12 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -4.24 Total: -120.31 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 9 Polarization: -12.26 SS G_CDS: 1.41 Total: -10.85 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 1.90 Total: 50.03 kcal Total: -84.96 4.18 -80.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106473639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.182 kcal (2) G-P(sol) polarization free energy of solvation -84.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds