Wall clock time and date at job start Tue Mar 31 2020 17:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 110.28875 * 2 1 4 4 C 1.53999 * 110.32819 * 237.86564 * 2 1 3 5 5 N 1.47486 * 107.08212 * 242.31037 * 4 2 1 6 6 C 1.34775 * 127.03392 * 154.51480 * 5 4 2 7 7 O 1.21279 * 120.00095 * 184.77294 * 6 5 4 8 8 C 1.50699 * 120.00273 * 5.04971 * 6 5 4 9 9 H 1.09003 * 109.47112 * 24.71983 * 8 6 5 10 10 C 1.53005 * 109.47146 * 264.72542 * 8 6 5 11 11 C 1.52999 * 109.46893 * 179.97438 * 10 8 6 12 12 C 1.52992 * 109.47759 * 59.99737 * 11 10 8 13 13 C 1.53005 * 109.47132 * 300.00116 * 12 11 10 14 14 C 1.52998 * 109.47663 * 144.71817 * 8 6 5 15 15 F 1.39894 * 109.47126 * 300.00635 * 14 8 6 16 16 F 1.39907 * 109.46894 * 60.00237 * 14 8 6 17 17 C 1.48113 * 105.93323 * 334.77748 * 5 4 2 18 18 C 1.54596 * 103.42313 * 39.02170 * 17 5 4 19 19 H 1.09001 * 110.57137 * 81.17427 * 18 17 5 20 20 C 1.52998 * 110.83514 * 204.44738 * 18 17 5 21 21 N 1.46505 * 109.47047 * 288.56319 * 20 18 17 22 22 C 1.36942 * 119.99901 * 180.02562 * 21 20 18 23 23 H 1.08003 * 119.99850 * 359.97438 * 22 21 20 24 24 C 1.38806 * 119.99784 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00422 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99757 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46987 * 90.00091 * 26 24 22 28 28 H 1.48507 * 109.47110 * 209.99772 * 26 24 22 29 29 H 1.48500 * 109.47084 * 329.99748 * 26 24 22 30 30 H 1.08999 * 109.46729 * 180.68815 * 1 2 3 31 31 H 1.08997 * 109.46800 * 300.68017 * 1 2 3 32 32 H 1.09000 * 109.46801 * 60.68242 * 1 2 3 33 33 H 1.08995 * 109.91599 * 122.95008 * 4 2 1 34 34 H 1.08999 * 110.07399 * 1.75623 * 4 2 1 35 35 H 1.09000 * 109.46911 * 299.99269 * 10 8 6 36 36 H 1.08997 * 109.47286 * 59.99799 * 10 8 6 37 37 H 1.09003 * 109.47339 * 299.99425 * 11 10 8 38 38 H 1.08999 * 109.47020 * 179.97438 * 11 10 8 39 39 H 1.08994 * 109.47995 * 179.97438 * 12 11 10 40 40 H 1.09003 * 109.46950 * 59.99449 * 12 11 10 41 41 H 1.09000 * 109.46911 * 299.99962 * 13 12 11 42 42 H 1.08997 * 109.47286 * 179.97438 * 13 12 11 43 43 H 1.09002 * 110.66493 * 157.51241 * 17 5 4 44 44 H 1.09006 * 110.66174 * 280.62346 * 17 5 4 45 45 H 1.08996 * 109.47200 * 48.56064 * 20 18 17 46 46 H 1.08998 * 109.47495 * 168.56672 * 20 18 17 47 47 H 0.97000 * 119.99880 * 0.02562 * 21 20 18 48 48 H 0.97003 * 120.00384 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0651 -0.7681 -1.2228 5 7 2.8299 -1.9203 -0.7101 6 6 3.0646 -3.0859 -1.3446 7 8 3.6394 -3.9850 -0.7684 8 6 2.6184 -3.2699 -2.7723 9 1 2.5416 -2.2968 -3.2572 10 6 1.2531 -3.9602 -2.7949 11 6 0.7999 -4.1464 -4.2443 12 6 1.8197 -5.0086 -4.9909 13 6 3.1850 -4.3183 -4.9683 14 6 3.6384 -4.1323 -3.5184 15 9 4.8867 -3.5011 -3.4976 16 9 3.7371 -5.3814 -2.8960 17 6 3.2817 -1.5367 0.6473 18 6 2.0694 -0.7719 1.2263 19 1 1.3211 -1.4691 1.6032 20 6 2.5114 0.1969 2.3249 21 7 2.9044 -0.5611 3.5154 22 6 3.3385 0.0981 4.6345 23 1 3.3915 1.1768 4.6392 24 6 3.7113 -0.6202 5.7622 25 7 3.6471 -1.9348 5.7562 26 14 4.3041 0.2790 7.2885 27 1 3.1454 0.5793 8.1674 28 1 5.2729 -0.5752 8.0213 29 1 4.9652 1.5477 6.8901 30 1 -0.3633 -1.0276 0.0123 31 1 -0.3633 0.5244 0.8838 32 1 -0.3633 0.5032 -0.8961 33 1 2.7167 -0.1221 -1.8111 34 1 1.2355 -1.1172 -1.8376 35 1 1.3300 -4.9334 -2.3101 36 1 0.5264 -3.3458 -2.2635 37 1 0.7229 -3.1731 -4.7289 38 1 -0.1725 -4.6386 -4.2605 39 1 1.4966 -5.1416 -6.0234 40 1 1.8966 -5.9819 -4.5064 41 1 3.1080 -3.3449 -5.4528 42 1 3.9116 -4.9327 -5.4998 43 1 3.4982 -2.4221 1.2451 44 1 4.1542 -0.8856 0.5925 45 1 3.3591 0.7842 1.9720 46 1 1.6863 0.8638 2.5749 47 1 2.8570 -1.5300 3.5109 48 1 3.9073 -2.4367 6.5445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106473640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:39 Heat of formation + Delta-G solvation = -141.537071 kcal Electronic energy + Delta-G solvation = -29945.055873 eV Core-core repulsion = 25669.950158 eV Total energy + Delta-G solvation = -4275.105715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.186 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.03838 -46.99288 -40.28453 -38.36691 -37.29746 -34.65943 -32.91776 -31.82713 -31.35644 -30.39019 -29.03327 -26.49914 -25.68527 -23.98718 -23.23238 -22.83406 -21.24369 -20.49015 -19.93337 -19.40702 -17.58524 -17.43617 -16.94549 -16.80293 -16.24262 -15.97304 -15.22315 -14.98999 -14.54177 -14.40252 -14.27541 -14.01945 -13.82898 -13.54617 -13.49854 -13.29496 -13.23502 -13.11694 -12.96146 -12.76007 -12.43955 -12.38112 -12.15265 -11.97768 -11.93118 -11.72124 -11.34996 -11.24733 -11.16266 -11.11989 -10.85120 -10.67123 -10.56699 -10.48572 -10.35954 -10.00759 -9.69543 -9.63792 -8.86550 -8.60858 -6.91038 -5.73552 -3.03287 2.51545 2.83320 3.45458 3.50127 3.50357 3.52543 3.69274 4.00130 4.02559 4.40010 4.50975 4.55073 4.57472 4.60163 4.68117 4.73063 4.82032 4.86168 4.90118 5.16551 5.18873 5.24170 5.37180 5.40380 5.46269 5.48477 5.50432 5.53100 5.59470 5.62815 5.66662 5.74954 5.77923 5.87514 5.95897 6.05389 6.11329 6.16585 6.19766 6.40497 6.46804 6.70896 6.83872 7.55818 7.71428 8.13823 8.44402 9.55595 10.12712 10.46917 11.48999 Molecular weight = 330.19amu Principal moments of inertia in cm(-1) A = 0.019231 B = 0.002813 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.603338 B = 9952.632451 C =10736.225907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.618 5.618 6 C 0.533 3.467 7 O -0.518 6.518 8 C -0.146 4.146 9 H 0.114 0.886 10 C -0.109 4.109 11 C -0.121 4.121 12 C -0.122 4.122 13 C -0.157 4.157 14 C 0.308 3.692 15 F -0.199 7.199 16 F -0.181 7.181 17 C 0.114 3.886 18 C -0.101 4.101 19 H 0.084 0.916 20 C 0.165 3.835 21 N -0.733 5.733 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.021 0.979 46 H 0.023 0.977 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.294 -0.954 -27.166 28.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.107 0.893 4 C -0.021 4.021 5 N -0.353 5.353 6 C 0.320 3.680 7 O -0.393 6.393 8 C -0.168 4.168 9 H 0.132 0.868 10 C -0.147 4.147 11 C -0.158 4.158 12 C -0.159 4.159 13 C -0.195 4.195 14 C 0.271 3.729 15 F -0.180 7.180 16 F -0.162 7.162 17 C -0.008 4.008 18 C -0.121 4.121 19 H 0.102 0.898 20 C 0.037 3.963 21 N -0.377 5.377 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.039 0.961 46 H 0.041 0.959 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.852 -1.431 -26.770 27.934 hybrid contribution 0.540 0.269 0.992 1.161 sum -7.312 -1.161 -25.778 26.820 Atomic orbital electron populations 1.21832 0.94108 1.01936 1.01952 1.22085 0.96356 0.99780 0.93726 0.89339 1.22256 0.95239 0.87602 0.96981 1.48822 1.53549 1.14378 1.18505 1.19690 0.79831 0.81195 0.87311 1.90810 1.41498 1.39787 1.67185 1.22379 0.97592 1.01867 0.94942 0.86800 1.21500 0.92807 1.02120 0.98282 1.21609 0.99155 1.00668 0.94395 1.21556 0.92890 0.99733 1.01745 1.22560 0.99729 1.04260 0.92961 1.20679 0.80360 0.78377 0.93464 1.93029 1.45105 1.82447 1.97387 1.93061 1.96268 1.42393 1.84486 1.22542 0.96881 1.00205 0.81123 1.22514 0.97071 0.97840 0.94680 0.89803 1.20620 0.96548 0.92712 0.86386 1.42380 1.79197 1.05974 1.10192 1.19197 1.36044 0.91230 0.90832 0.91191 1.24756 1.02331 0.95484 0.98336 1.69663 1.54257 1.04556 1.29442 0.86197 0.78172 0.78471 0.83370 1.21744 1.21765 1.20775 0.92661 0.91774 0.92751 0.91519 0.90971 0.89829 0.89971 0.91186 0.90423 0.90250 0.90556 0.88712 0.89063 0.89217 0.90621 0.96109 0.95904 0.78190 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.90 37.16 0.33 -1.02 16 2 C -0.10 -1.12 3.17 -89.25 -0.28 -1.40 16 3 H 0.09 0.93 7.85 -51.93 -0.41 0.53 16 4 C 0.10 1.04 5.94 -2.98 -0.02 1.02 16 5 N -0.62 -8.79 3.29 -169.98 -0.56 -9.35 16 6 C 0.53 8.22 6.62 -10.99 -0.07 8.15 16 7 O -0.52 -10.50 15.56 5.56 0.09 -10.41 16 8 C -0.15 -1.55 1.67 -91.77 -0.15 -1.71 16 9 H 0.11 0.91 7.19 -51.93 -0.37 0.54 16 10 C -0.11 -0.93 5.06 -26.73 -0.14 -1.06 16 11 C -0.12 -0.66 5.92 -26.74 -0.16 -0.82 16 12 C -0.12 -0.71 5.80 -26.73 -0.16 -0.86 16 13 C -0.16 -1.13 5.46 -26.70 -0.15 -1.27 16 14 C 0.31 3.60 1.51 -26.71 -0.04 3.56 16 15 F -0.20 -2.80 16.77 2.25 0.04 -2.76 16 16 F -0.18 -2.69 14.62 2.25 0.03 -2.66 16 17 C 0.11 1.92 6.45 -2.32 -0.01 1.90 16 18 C -0.10 -1.59 2.61 -88.93 -0.23 -1.82 16 19 H 0.08 1.42 7.86 -51.93 -0.41 1.01 16 20 C 0.17 3.20 5.58 -4.04 -0.02 3.18 16 21 N -0.73 -18.57 5.52 -59.91 -0.33 -18.90 16 22 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 23 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 26 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.56 7.13 -51.93 -0.37 0.19 16 35 H 0.08 0.87 7.80 -51.93 -0.41 0.47 16 36 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.53 7.80 -51.93 -0.41 0.12 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.80 7.82 -51.93 -0.41 1.40 16 44 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 45 H 0.02 0.41 7.99 -51.93 -0.41 -0.01 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.38 10.40 7.67 -40.82 -0.31 10.08 16 48 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -35.05 382.54 -8.72 -43.77 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -8.11 Total: 4.50 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.35 Total: 0.41 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.17 Total: -56.28 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.07 Total: -5.42 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.05 -8.72 -43.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106473640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.768 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds